2HQ9A

Crystal structure of a fad-binding protein (mll6688) from mesorhizobium loti at 1.95 a resolution
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
149
structure length
135
Chain Sequence
GMLVRTLSALECTKVLTANRVGRLACAKDGQPYVVPLYYAYSDAHLYAFSMPGKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLIGHKLQRDHAWSVLSKHTDWWEAPHVFFRILIEQVSGREASE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (8-17)S1 (2-6)S3 (30-41)EMPTYS5 (63-71)3H1 (57-60)S2 (20-27)TIV1 (26-29)TII'1 (41-44)AH2 (53-56)S4 (44-49)S7 (132-147)TIV2 (72-75)S6 (77-88)O1 (90-92)TII'2 (73-76)3H2 (93-95)AH3 (96-113)Updating...
connected with : NaN
publication title Crystal structure of hypothetical protein (NP_107146.1) from MESORHIZOBIUM LOTI at 1.95 A resolution
rcsb
molecule keywords Mll6688 protein
molecule tags Flavoprotein
source organism Mesorhizobium loti
total genus 33
structure length 135
sequence length 149
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2hq9A00
1T9MA 3KYFA 4HMXA 4HMWA 3BPKA 3TGVA 2X1JA 1YLNA 3R5ZA 5ESCA 3DMBA 2FURA 1RFEA 4XJ2A 2IABA 4HX6A 4HMVA 1G78A 2ASFA 3RH7A 2HQ9A 4IRAA 3U5WA 2I51A 1I0SA 3EC6A 4YBNA 1AXJA 3VY5A 3PFTA 3NFWA 3R5RA 4QVBA 2Q9KA 3K87A 1FLMA 3CP3A 3BA3A 2NR4A 1TY9A 2R6VA 2OL5A 3ZODA 2IMLA 3A6RA 1EJEA 2HTIA 1RZ0A 1W3PA 3U0IA 2HQ7A 4YWNA 3AMFA 3FGEA 3HMZA 1RZ1A 3U35A 2D5MA 2R0XA 4XHYA 3H96A 5CHEC 2RE7A 3CB0A 1JNWA 1WLKA 1G79A 2A2JA 3R5LA 2FG9A 1VL7A 3KYGA 4HMTA 1CI0A 1W9AA 3ZOCA 1I0RA 4Y9IA 1WGBA 2I02A 1G76A 3K88A 3ZOEA 3R5YA 1USCA 3K86A 4N7RC 1WLIA 5BNCA 2ECRA 3ZOFA 1W3RA 2QEAA 3A20A 1DNLA 3E4VA 1USFA 1Y30A 2QCKA 2HHZA 2FHQA 1W3QA 2PTFA 3DB0A 3B5MA 4HMUA 2HTDA 2E83A 5JABA 2ECUA 1YOAA 3BNKA 3GASA 1W3OA 2ARZA 3R5WA 2IG6A 2D38A 1WV4A 3SWJA 3A6QA 3ZOHA 3AWHA 3DNHA 3F7EA 4F07A 4L82A 1G77A 2D36A 2D37A 3IN6A 5CHOA 4HMSA 4Z85A 2AQ6A 3R5PA 2RDEA 1XXOA 1XHNA 4ZKYA 3VYAA 3U34A 3VY2A 2OU5A 2GJGA 1NRGA 2ED4A 3ZOGA 3HY8A 2X1KA 4R82A 3FKHA 2VPAA
chains in the Genus database with same CATH superfamily
1T9MA 3KYFA 4HMXA 4HMWA 3BPKA 3EAAA 3TGVA 3V4HA 2X1JA 1YLNA 3R5ZA 5ESCA 3DMBA 2FURA 1RFEA 4XJ2A 2IABA 4HX6A 4HMVA 1G78A 4HKHA 2ASFA 3RH7A 2HQ9A 4IRAA 3U5WA 2I51A 1I0SA 3EC6A 4YBNA 1AXJA 3VY5A 3PFTA 3NFWA 3R5RA 4QVBA 2Q9KA 3K87A 1FLMA 3CP3A 3BA3A 2NR4A 1TY9A 4TV4A 2R6VA 2OL5A 3ZODA 2IMLA 3A6RA 1EJEA 2HTIA 4W64A 1RZ0A 4UHVA 1W3PA 3U0IA 2HQ7A 4YWNA 3AMFA 3FGEA 3HMZA 1RZ1A 3U35A 2D5MA 2R0XA 4XHYA 3H96A 5CHEC 2RE7A 3CB0A 1JNWA 1WLKA 1G79A 2A2JA 3R5LA 2FG9A 1VL7A 3KYGA 4HMTA 1CI0A 1W9AA 3ZOCA 1I0RA 4Y9IA 1WGBA 2I02A 1G76A 3K88A 2GUJA 3ZOEA 3R5YA 1USCA 3K86A 4N7RC 1WLIA 5BNCA 2P5ZX 2K4QA 2ECRA 3ZOFA 1W3RA 2QEAA 3A20A 1DNLA 3E4VA 1USFA 1Y30A 2QCKA 2HHZA 2FHQA 1W3QA 2PTFA 3DB0A 3B5MA 4HMUA 2HTDA 2E83A 5JABA 2ECUA 1YOAA 3BNKA 3GASA 1W3OA 2ARZA 4MTKA 3R5WA 2IG6A 2L1TA 1Y12A 2D38A 1WV4A 3SWJA 3A6QA 3ZOHA 3AWHA 3DNHA 3F7EA 4F07A 4L82A 1G77A 2D36A 2D37A 3IN6A 5CHOA 4HMSA 4Z85A 2AQ6A 3R5PA 2RDEA 1XXOA 1XHNA 3HE1A 4ZKYA 3VYAA 3U34A 3VY2A 2OU5A 2GJGA 1NRGA 2ED4A 3ZOGA 3HY8A 2X1KA 4R82A 3FKHA 2VPAA
chains in the Genus database with same CATH topology
1T9MA 3KYFA 4HMXA 4HMWA 3BPKA 3TGVA 2X1JA 1YLNA 3R5ZA 5ESCA 3DMBA 2FURA 1RFEA 4XJ2A 2IABA 4HX6A 4HMVA 1G78A 2ASFA 3RH7A 2HQ9A 4IRAA 3U5WA 2I51A 1I0SA 3EC6A 4YBNA 1AXJA 3VY5A 3PFTA 3NFWA 3R5RA 4QVBA 2Q9KA 3K87A 1FLMA 3CP3A 3BA3A 2NR4A 1TY9A 2R6VA 2OL5A 3ZODA 2IMLA 3A6RA 1EJEA 2HTIA 1RZ0A 1W3PA 3U0IA 2HQ7A 4YWNA 3AMFA 3FGEA 3HMZA 1RZ1A 3U35A 2D5MA 2R0XA 4XHYA 3H96A 5CHEC 2RE7A 3CB0A 1JNWA 1WLKA 1G79A 2A2JA 3R5LA 2FG9A 1VL7A 3KYGA 4HMTA 1CI0A 1W9AA 3ZOCA 1I0RA 4Y9IA 1WGBA 2I02A 1G76A 3K88A 3ZOEA 3R5YA 1USCA 3K86A 4N7RC 1WLIA 5BNCA 2ECRA 3ZOFA 1W3RA 2QEAA 3A20A 1DNLA 3E4VA 1USFA 1Y30A 2QCKA 2HHZA 2FHQA 1W3QA 2PTFA 3DB0A 3B5MA 4HMUA 2HTDA 2E83A 5JABA 2ECUA 1YOAA 3BNKA 3GASA 1W3OA 2ARZA 3R5WA 2IG6A 2D38A 1WV4A 3SWJA 3A6QA 3ZOHA 3AWHA 3DNHA 3F7EA 4F07A 4L82A 1G77A 2D36A 2D37A 3IN6A 5CHOA 4HMSA 4Z85A 2AQ6A 3R5PA 2RDEA 1XXOA 1XHNA 4ZKYA 3VYAA 3U34A 3VY2A 2OU5A 2GJGA 1NRGA 2ED4A 3ZOGA 3HY8A 2X1KA 4R82A 3FKHA 2VPAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T9M A;  3KYF A;  4HMX A;  4HMW A;  3BPK A;  3TGV A;  2X1J A;  1YLN A;  3R5Z A;  5ESC A;  3DMB A;  2FUR A;  1RFE A;  4XJ2 A;  2IAB A;  4HX6 A;  4HMV A;  1G78 A;  2ASF A;  3RH7 A;  2HQ9 A;  4IRA A;  3U5W A;  2I51 A;  1I0S A;  3EC6 A;  4YBN A;  1AXJ A;  3VY5 A;  3PFT A;  3NFW A;  3R5R A;  4QVB A;  2Q9K A;  3K87 A;  1FLM A;  3CP3 A;  3BA3 A;  2NR4 A;  1TY9 A;  2R6V A;  2OL5 A;  3ZOD A;  2IML A;  3A6R A;  1EJE A;  2HTI A;  1RZ0 A;  1W3P A;  3U0I A;  2HQ7 A;  4YWN A;  3AMF A;  3FGE A;  3HMZ A;  1RZ1 A;  3U35 A;  2D5M A;  2R0X A;  4XHY A;  3H96 A;  5CHE C;  2RE7 A;  3CB0 A;  1JNW A;  1WLK A;  1G79 A;  2A2J A;  3R5L A;  2FG9 A;  1VL7 A;  3KYG A;  4HMT A;  1CI0 A;  1W9A A;  3ZOC A;  1I0R A;  4Y9I A;  1WGB A;  2I02 A;  1G76 A;  3K88 A;  3ZOE A;  3R5Y A;  1USC A;  3K86 A;  4N7R C;  1WLI A;  5BNC A;  2ECR A;  3ZOF A;  1W3R A;  2QEA A;  3A20 A;  1DNL A;  3E4V A;  1USF A;  1Y30 A;  2QCK A;  2HHZ A;  2FHQ A;  1W3Q A;  2PTF A;  3DB0 A;  3B5M A;  4HMU A;  2HTD A;  2E83 A;  5JAB A;  2ECU A;  1YOA A;  3BNK A;  3GAS A;  1W3O A;  2ARZ A;  3R5W A;  2IG6 A;  2D38 A;  1WV4 A;  3SWJ A;  3A6Q A;  3ZOH A;  3AWH A;  3DNH A;  3F7E A;  4F07 A;  4L82 A;  1G77 A;  2D36 A;  2D37 A;  3IN6 A;  5CHO A;  4HMS A;  4Z85 A;  2AQ6 A;  3R5P A;  2RDE A;  1XXO A;  1XHN A;  4ZKY A;  3VYA A;  3U34 A;  3VY2 A;  2OU5 A;  2GJG A;  1NRG A;  2ED4 A;  3ZOG A;  3HY8 A;  2X1K A;  4R82 A;  3FKH A;  2VPA A; 
#chains in the Genus database with same CATH topology
 1T9M A;  3KYF A;  4HMX A;  4HMW A;  3BPK A;  3EAA A;  3TGV A;  3V4H A;  2X1J A;  1YLN A;  3R5Z A;  5ESC A;  3DMB A;  2FUR A;  1RFE A;  4XJ2 A;  2IAB A;  4HX6 A;  4HMV A;  1G78 A;  4HKH A;  2ASF A;  3RH7 A;  2HQ9 A;  4IRA A;  3U5W A;  2I51 A;  1I0S A;  3EC6 A;  4YBN A;  1AXJ A;  3VY5 A;  3PFT A;  3NFW A;  3R5R A;  4QVB A;  2Q9K A;  3K87 A;  1FLM A;  3CP3 A;  3BA3 A;  2NR4 A;  1TY9 A;  4TV4 A;  2R6V A;  2OL5 A;  3ZOD A;  2IML A;  3A6R A;  1EJE A;  2HTI A;  4W64 A;  1RZ0 A;  4UHV A;  1W3P A;  3U0I A;  2HQ7 A;  4YWN A;  3AMF A;  3FGE A;  3HMZ A;  1RZ1 A;  3U35 A;  2D5M A;  2R0X A;  4XHY A;  3H96 A;  5CHE C;  2RE7 A;  3CB0 A;  1JNW A;  1WLK A;  1G79 A;  2A2J A;  3R5L A;  2FG9 A;  1VL7 A;  3KYG A;  4HMT A;  1CI0 A;  1W9A A;  3ZOC A;  1I0R A;  4Y9I A;  1WGB A;  2I02 A;  1G76 A;  3K88 A;  2GUJ A;  3ZOE A;  3R5Y A;  1USC A;  3K86 A;  4N7R C;  1WLI A;  5BNC A;  2P5Z X;  2K4Q A;  2ECR A;  3ZOF A;  1W3R A;  2QEA A;  3A20 A;  1DNL A;  3E4V A;  1USF A;  1Y30 A;  2QCK A;  2HHZ A;  2FHQ A;  1W3Q A;  2PTF A;  3DB0 A;  3B5M A;  4HMU A;  2HTD A;  2E83 A;  5JAB A;  2ECU A;  1YOA A;  3BNK A;  3GAS A;  1W3O A;  2ARZ A;  4MTK A;  3R5W A;  2IG6 A;  2L1T A;  1Y12 A;  2D38 A;  1WV4 A;  3SWJ A;  3A6Q A;  3ZOH A;  3AWH A;  3DNH A;  3F7E A;  4F07 A;  4L82 A;  1G77 A;  2D36 A;  2D37 A;  3IN6 A;  5CHO A;  4HMS A;  4Z85 A;  2AQ6 A;  3R5P A;  2RDE A;  1XXO A;  1XHN A;  3HE1 A;  4ZKY A;  3VYA A;  3U34 A;  3VY2 A;  2OU5 A;  2GJG A;  1NRG A;  2ED4 A;  3ZOG A;  3HY8 A;  2X1K A;  4R82 A;  3FKH A;  2VPA A; 
#chains in the Genus database with same CATH homology
 1T9M A;  3KYF A;  4HMX A;  4HMW A;  3BPK A;  3TGV A;  2X1J A;  1YLN A;  3R5Z A;  5ESC A;  3DMB A;  2FUR A;  1RFE A;  4XJ2 A;  2IAB A;  4HX6 A;  4HMV A;  1G78 A;  2ASF A;  3RH7 A;  2HQ9 A;  4IRA A;  3U5W A;  2I51 A;  1I0S A;  3EC6 A;  4YBN A;  1AXJ A;  3VY5 A;  3PFT A;  3NFW A;  3R5R A;  4QVB A;  2Q9K A;  3K87 A;  1FLM A;  3CP3 A;  3BA3 A;  2NR4 A;  1TY9 A;  2R6V A;  2OL5 A;  3ZOD A;  2IML A;  3A6R A;  1EJE A;  2HTI A;  1RZ0 A;  1W3P A;  3U0I A;  2HQ7 A;  4YWN A;  3AMF A;  3FGE A;  3HMZ A;  1RZ1 A;  3U35 A;  2D5M A;  2R0X A;  4XHY A;  3H96 A;  5CHE C;  2RE7 A;  3CB0 A;  1JNW A;  1WLK A;  1G79 A;  2A2J A;  3R5L A;  2FG9 A;  1VL7 A;  3KYG A;  4HMT A;  1CI0 A;  1W9A A;  3ZOC A;  1I0R A;  4Y9I A;  1WGB A;  2I02 A;  1G76 A;  3K88 A;  3ZOE A;  3R5Y A;  1USC A;  3K86 A;  4N7R C;  1WLI A;  5BNC A;  2ECR A;  3ZOF A;  1W3R A;  2QEA A;  3A20 A;  1DNL A;  3E4V A;  1USF A;  1Y30 A;  2QCK A;  2HHZ A;  2FHQ A;  1W3Q A;  2PTF A;  3DB0 A;  3B5M A;  4HMU A;  2HTD A;  2E83 A;  5JAB A;  2ECU A;  1YOA A;  3BNK A;  3GAS A;  1W3O A;  2ARZ A;  3R5W A;  2IG6 A;  2D38 A;  1WV4 A;  3SWJ A;  3A6Q A;  3ZOH A;  3AWH A;  3DNH A;  3F7E A;  4F07 A;  4L82 A;  1G77 A;  2D36 A;  2D37 A;  3IN6 A;  5CHO A;  4HMS A;  4Z85 A;  2AQ6 A;  3R5P A;  2RDE A;  1XXO A;  1XHN A;  4ZKY A;  3VYA A;  3U34 A;  3VY2 A;  2OU5 A;  2GJG A;  1NRG A;  2ED4 A;  3ZOG A;  3HY8 A;  2X1K A;  4R82 A;  3FKH A;  2VPA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.