2HQ9A

Crystal structure of a fad-binding protein (mll6688) from mesorhizobium loti at 1.95 a resolution
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
149
structure length
135
Chain Sequence
GMLVRTLSALECTKVLTANRVGRLACAKDGQPYVVPLYYAYSDAHLYAFSMPGKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLIGHKLQRDHAWSVLSKHTDWWEAPHVFFRILIEQVSGREASE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (8-17)S1 (2-6)S3 (30-41)EMPTYS5 (63-71)3H1 (57-60)S2 (20-27)TIV1 (26-29)TII'1 (41-44)AH2 (53-56)S4 (44-49)S7 (132-147)TIV2 (72-75)S6 (77-88)O1 (90-92)TII'2 (73-76)3H2 (93-95)AH3 (96-113)Updating...
connected with : NaN
publication title Crystal structure of hypothetical protein (NP_107146.1) from MESORHIZOBIUM LOTI at 1.95 A resolution
rcsb
molecule keywords Mll6688 protein
molecule tags Flavoprotein
source organism Mesorhizobium loti
total genus 33
structure length 135
sequence length 149
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2hq9A00
3K87A 4HX6A 2RE7A 4L82A 4R82A 3DB0A 4Z85A 3ZOEA 4HMWA 1RZ0A 2HHZA 4F07A 3E4VA 1W9AA 4HMUA 5ESCA 1RZ1A 4QVBA 3ZODA 3A20A 3KYFA 4XJ2A 1XHNA 4Y9IA 5CHEC 1RFEA 2QCKA 2E83A 1W3RA 3VY2A 1W3QA 3CP3A 4HMSA 1JNWA 4IRAA 1WLIA 3AWHA 3VY5A 3U34A 3R5PA 3ZOFA 2A2JA 1DNLA 1G76A 1YOAA 3VYAA 3TGVA 2OU5A 1YLNA 5CHOA 4ZKYA 4HMTA 3KYGA 1W3PA 1CI0A 2GJGA 3HMZA 2PTFA 2AQ6A 2ECUA 2IABA 3A6QA 3HY8A 5JABA 2D5MA 2VPAA 3BA3A 3ZOCA 1WLKA 1W3OA 1WV4A 3U35A 3U0IA 4YWNA 2R6VA 2D37A 1G77A 1NRGA 3CB0A 2HTIA 3AMFA 1T9MA 2D36A 1EJEA 1I0RA 3H96A 3K86A 3PFTA 4HMXA 2Q9KA 3DNHA 1I0SA 3BPKA 3R5WA 2OL5A 3FKHA 3U5WA 2FG9A 2IMLA 4YBNA 2I51A 3A6RA 2D38A 1USFA 2ED4A 2ARZA 4HMVA 1TY9A 3NFWA 1G78A 1XXOA 2IG6A 2R0XA 1Y30A 3IN6A 5BNCA 3EC6A 3FGEA 3BNKA 2HQ7A 3GASA 3DMBA 4N7RC 3F7EA 2ECRA 2ASFA 1USCA 1AXJA 2HTDA 1FLMA 3R5RA 2X1JA 2RDEA 3R5YA 4XHYA 2FURA 2X1KA 3R5ZA 2NR4A 1WGBA 3ZOGA 1VL7A 3K88A 3R5LA 2I02A 1G79A 2FHQA 3RH7A 2QEAA 3B5MA 3SWJA 3ZOHA 2HQ9A
chains in the Genus database with same CATH superfamily
4TV4A 3K87A 4HX6A 2RE7A 4L82A 4R82A 3DB0A 4Z85A 3ZOEA 4HMWA 1RZ0A 2HHZA 4F07A 3E4VA 1W9AA 4HMUA 5ESCA 1RZ1A 4QVBA 2L1TA 3ZODA 3A20A 3KYFA 4XJ2A 1XHNA 4Y9IA 2P5ZX 3EAAA 5CHEC 1RFEA 2QCKA 2E83A 1W3RA 3VY2A 1W3QA 3CP3A 4HMSA 1JNWA 4IRAA 1WLIA 3AWHA 3VY5A 3U34A 3R5PA 3ZOFA 2A2JA 1DNLA 1G76A 1YOAA 3VYAA 3TGVA 2OU5A 1YLNA 5CHOA 4ZKYA 4HMTA 3KYGA 1W3PA 1CI0A 2GJGA 3HMZA 1Y12A 2PTFA 2AQ6A 2ECUA 2IABA 3A6QA 3HY8A 5JABA 2D5MA 2VPAA 3BA3A 3ZOCA 1WLKA 1W3OA 1WV4A 3U35A 3U0IA 4YWNA 2R6VA 2D37A 1G77A 1NRGA 3CB0A 2HTIA 3AMFA 1T9MA 2D36A 1EJEA 1I0RA 3H96A 3K86A 3PFTA 4HMXA 2Q9KA 3DNHA 1I0SA 3BPKA 3R5WA 2OL5A 3FKHA 3V4HA 3U5WA 2FG9A 2IMLA 4YBNA 2I51A 3A6RA 2D38A 1USFA 2ED4A 2ARZA 4HMVA 1TY9A 2GUJA 3NFWA 4UHVA 1G78A 1XXOA 2IG6A 2R0XA 1Y30A 3IN6A 5BNCA 3EC6A 3FGEA 3BNKA 2HQ7A 2K4QA 3GASA 3DMBA 4N7RC 3F7EA 2ECRA 2ASFA 1USCA 3HE1A 1AXJA 4W64A 2HTDA 1FLMA 3R5RA 2X1JA 2RDEA 3R5YA 4XHYA 2FURA 2X1KA 4HKHA 3R5ZA 2NR4A 1WGBA 3ZOGA 1VL7A 3K88A 4MTKA 3R5LA 2I02A 1G79A 2FHQA 3RH7A 2QEAA 3B5MA 3SWJA 3ZOHA 2HQ9A
chains in the Genus database with same CATH topology
3K87A 4HX6A 2RE7A 4L82A 4R82A 3DB0A 4Z85A 3ZOEA 4HMWA 1RZ0A 2HHZA 4F07A 3E4VA 1W9AA 4HMUA 5ESCA 1RZ1A 4QVBA 3ZODA 3A20A 3KYFA 4XJ2A 1XHNA 4Y9IA 5CHEC 1RFEA 2QCKA 2E83A 1W3RA 3VY2A 1W3QA 3CP3A 4HMSA 1JNWA 4IRAA 1WLIA 3AWHA 3VY5A 3U34A 3R5PA 3ZOFA 2A2JA 1DNLA 1G76A 1YOAA 3VYAA 3TGVA 2OU5A 1YLNA 5CHOA 4ZKYA 4HMTA 3KYGA 1W3PA 1CI0A 2GJGA 3HMZA 2PTFA 2AQ6A 2ECUA 2IABA 3A6QA 3HY8A 5JABA 2D5MA 2VPAA 3BA3A 3ZOCA 1WLKA 1W3OA 1WV4A 3U35A 3U0IA 4YWNA 2R6VA 2D37A 1G77A 1NRGA 3CB0A 2HTIA 3AMFA 1T9MA 2D36A 1EJEA 1I0RA 3H96A 3K86A 3PFTA 4HMXA 2Q9KA 3DNHA 1I0SA 3BPKA 3R5WA 2OL5A 3FKHA 3U5WA 2FG9A 2IMLA 4YBNA 2I51A 3A6RA 2D38A 1USFA 2ED4A 2ARZA 4HMVA 1TY9A 3NFWA 1G78A 1XXOA 2IG6A 2R0XA 1Y30A 3IN6A 5BNCA 3EC6A 3FGEA 3BNKA 2HQ7A 3GASA 3DMBA 4N7RC 3F7EA 2ECRA 2ASFA 1USCA 1AXJA 2HTDA 1FLMA 3R5RA 2X1JA 2RDEA 3R5YA 4XHYA 2FURA 2X1KA 3R5ZA 2NR4A 1WGBA 3ZOGA 1VL7A 3K88A 3R5LA 2I02A 1G79A 2FHQA 3RH7A 2QEAA 3B5MA 3SWJA 3ZOHA 2HQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K87 A;  4HX6 A;  2RE7 A;  4L82 A;  4R82 A;  3DB0 A;  4Z85 A;  3ZOE A;  4HMW A;  1RZ0 A;  2HHZ A;  4F07 A;  3E4V A;  1W9A A;  4HMU A;  5ESC A;  1RZ1 A;  4QVB A;  3ZOD A;  3A20 A;  3KYF A;  4XJ2 A;  1XHN A;  4Y9I A;  5CHE C;  1RFE A;  2QCK A;  2E83 A;  1W3R A;  3VY2 A;  1W3Q A;  3CP3 A;  4HMS A;  1JNW A;  4IRA A;  1WLI A;  3AWH A;  3VY5 A;  3U34 A;  3R5P A;  3ZOF A;  2A2J A;  1DNL A;  1G76 A;  1YOA A;  3VYA A;  3TGV A;  2OU5 A;  1YLN A;  5CHO A;  4ZKY A;  4HMT A;  3KYG A;  1W3P A;  1CI0 A;  2GJG A;  3HMZ A;  2PTF A;  2AQ6 A;  2ECU A;  2IAB A;  3A6Q A;  3HY8 A;  5JAB A;  2D5M A;  2VPA A;  3BA3 A;  3ZOC A;  1WLK A;  1W3O A;  1WV4 A;  3U35 A;  3U0I A;  4YWN A;  2R6V A;  2D37 A;  1G77 A;  1NRG A;  3CB0 A;  2HTI A;  3AMF A;  1T9M A;  2D36 A;  1EJE A;  1I0R A;  3H96 A;  3K86 A;  3PFT A;  4HMX A;  2Q9K A;  3DNH A;  1I0S A;  3BPK A;  3R5W A;  2OL5 A;  3FKH A;  3U5W A;  2FG9 A;  2IML A;  4YBN A;  2I51 A;  3A6R A;  2D38 A;  1USF A;  2ED4 A;  2ARZ A;  4HMV A;  1TY9 A;  3NFW A;  1G78 A;  1XXO A;  2IG6 A;  2R0X A;  1Y30 A;  3IN6 A;  5BNC A;  3EC6 A;  3FGE A;  3BNK A;  2HQ7 A;  3GAS A;  3DMB A;  4N7R C;  3F7E A;  2ECR A;  2ASF A;  1USC A;  1AXJ A;  2HTD A;  1FLM A;  3R5R A;  2X1J A;  2RDE A;  3R5Y A;  4XHY A;  2FUR A;  2X1K A;  3R5Z A;  2NR4 A;  1WGB A;  3ZOG A;  1VL7 A;  3K88 A;  3R5L A;  2I02 A;  1G79 A;  2FHQ A;  3RH7 A;  2QEA A;  3B5M A;  3SWJ A;  3ZOH A;  2HQ9 A; 
#chains in the Genus database with same CATH topology
 4TV4 A;  3K87 A;  4HX6 A;  2RE7 A;  4L82 A;  4R82 A;  3DB0 A;  4Z85 A;  3ZOE A;  4HMW A;  1RZ0 A;  2HHZ A;  4F07 A;  3E4V A;  1W9A A;  4HMU A;  5ESC A;  1RZ1 A;  4QVB A;  2L1T A;  3ZOD A;  3A20 A;  3KYF A;  4XJ2 A;  1XHN A;  4Y9I A;  2P5Z X;  3EAA A;  5CHE C;  1RFE A;  2QCK A;  2E83 A;  1W3R A;  3VY2 A;  1W3Q A;  3CP3 A;  4HMS A;  1JNW A;  4IRA A;  1WLI A;  3AWH A;  3VY5 A;  3U34 A;  3R5P A;  3ZOF A;  2A2J A;  1DNL A;  1G76 A;  1YOA A;  3VYA A;  3TGV A;  2OU5 A;  1YLN A;  5CHO A;  4ZKY A;  4HMT A;  3KYG A;  1W3P A;  1CI0 A;  2GJG A;  3HMZ A;  1Y12 A;  2PTF A;  2AQ6 A;  2ECU A;  2IAB A;  3A6Q A;  3HY8 A;  5JAB A;  2D5M A;  2VPA A;  3BA3 A;  3ZOC A;  1WLK A;  1W3O A;  1WV4 A;  3U35 A;  3U0I A;  4YWN A;  2R6V A;  2D37 A;  1G77 A;  1NRG A;  3CB0 A;  2HTI A;  3AMF A;  1T9M A;  2D36 A;  1EJE A;  1I0R A;  3H96 A;  3K86 A;  3PFT A;  4HMX A;  2Q9K A;  3DNH A;  1I0S A;  3BPK A;  3R5W A;  2OL5 A;  3FKH A;  3V4H A;  3U5W A;  2FG9 A;  2IML A;  4YBN A;  2I51 A;  3A6R A;  2D38 A;  1USF A;  2ED4 A;  2ARZ A;  4HMV A;  1TY9 A;  2GUJ A;  3NFW A;  4UHV A;  1G78 A;  1XXO A;  2IG6 A;  2R0X A;  1Y30 A;  3IN6 A;  5BNC A;  3EC6 A;  3FGE A;  3BNK A;  2HQ7 A;  2K4Q A;  3GAS A;  3DMB A;  4N7R C;  3F7E A;  2ECR A;  2ASF A;  1USC A;  3HE1 A;  1AXJ A;  4W64 A;  2HTD A;  1FLM A;  3R5R A;  2X1J A;  2RDE A;  3R5Y A;  4XHY A;  2FUR A;  2X1K A;  4HKH A;  3R5Z A;  2NR4 A;  1WGB A;  3ZOG A;  1VL7 A;  3K88 A;  4MTK A;  3R5L A;  2I02 A;  1G79 A;  2FHQ A;  3RH7 A;  2QEA A;  3B5M A;  3SWJ A;  3ZOH A;  2HQ9 A; 
#chains in the Genus database with same CATH homology
 3K87 A;  4HX6 A;  2RE7 A;  4L82 A;  4R82 A;  3DB0 A;  4Z85 A;  3ZOE A;  4HMW A;  1RZ0 A;  2HHZ A;  4F07 A;  3E4V A;  1W9A A;  4HMU A;  5ESC A;  1RZ1 A;  4QVB A;  3ZOD A;  3A20 A;  3KYF A;  4XJ2 A;  1XHN A;  4Y9I A;  5CHE C;  1RFE A;  2QCK A;  2E83 A;  1W3R A;  3VY2 A;  1W3Q A;  3CP3 A;  4HMS A;  1JNW A;  4IRA A;  1WLI A;  3AWH A;  3VY5 A;  3U34 A;  3R5P A;  3ZOF A;  2A2J A;  1DNL A;  1G76 A;  1YOA A;  3VYA A;  3TGV A;  2OU5 A;  1YLN A;  5CHO A;  4ZKY A;  4HMT A;  3KYG A;  1W3P A;  1CI0 A;  2GJG A;  3HMZ A;  2PTF A;  2AQ6 A;  2ECU A;  2IAB A;  3A6Q A;  3HY8 A;  5JAB A;  2D5M A;  2VPA A;  3BA3 A;  3ZOC A;  1WLK A;  1W3O A;  1WV4 A;  3U35 A;  3U0I A;  4YWN A;  2R6V A;  2D37 A;  1G77 A;  1NRG A;  3CB0 A;  2HTI A;  3AMF A;  1T9M A;  2D36 A;  1EJE A;  1I0R A;  3H96 A;  3K86 A;  3PFT A;  4HMX A;  2Q9K A;  3DNH A;  1I0S A;  3BPK A;  3R5W A;  2OL5 A;  3FKH A;  3U5W A;  2FG9 A;  2IML A;  4YBN A;  2I51 A;  3A6R A;  2D38 A;  1USF A;  2ED4 A;  2ARZ A;  4HMV A;  1TY9 A;  3NFW A;  1G78 A;  1XXO A;  2IG6 A;  2R0X A;  1Y30 A;  3IN6 A;  5BNC A;  3EC6 A;  3FGE A;  3BNK A;  2HQ7 A;  3GAS A;  3DMB A;  4N7R C;  3F7E A;  2ECR A;  2ASF A;  1USC A;  1AXJ A;  2HTD A;  1FLM A;  3R5R A;  2X1J A;  2RDE A;  3R5Y A;  4XHY A;  2FUR A;  2X1K A;  3R5Z A;  2NR4 A;  1WGB A;  3ZOG A;  1VL7 A;  3K88 A;  3R5L A;  2I02 A;  1G79 A;  2FHQ A;  3RH7 A;  2QEA A;  3B5M A;  3SWJ A;  3ZOH A;  2HQ9 A; 
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