2HQ9 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	149
structure length	135
Chain Sequence	GMLVRTLSALECTKVLTANRVGRLACAKDGQPYVVPLYYAYSDAHLYAFSMPGKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLIGHKLQRDHAWSVLSKHTDWWEAPHVFFRILIEQVSGREASE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of hypothetical protein (NP_107146.1) from MESORHIZOBIUM LOTI at 1.95 A resolution rcsb
molecule keywords	Mll6688 protein
molecule tags	Flavoprotein
source organism	Mesorhizobium loti
total genus	33
structure length	135
sequence length	149
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-07-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12900	Pyridox_ox_2	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	2hq9A00

4L82A 3DMBA 3U35A 3FGEA 3R5ZA 3VY2A 2ECUA 2RDEA 1W3RA 3A6QA 4QVBA 1TY9A 2OU5A 3CB0A 4F07A 2D5MA 1YLNA 2X1KA 4YWNA 2QEAA 3CP3A 4R82A 2RE7A 3DNHA 3R5PA 4YBNA 4Z85A 2HQ7A 1W9AA 2ASFA 3K87A 1W3PA 1W3QA 3ZOFA 3ZODA 3BNKA 3ZOCA 3KYGA 3F7EA 4Y9IA 1Y30A 1WGBA 2R6VA 3H96A 1EJEA 2IABA 2HTDA 2ED4A 4ZKYA 3VYAA 3K88A 1W3OA 2ECRA 1T9MA 1G79A 1I0SA 3R5LA 1XHNA 2HTIA 2OL5A 3U0IA 1G78A 1RFEA 4HMTA 4XHYA 4XJ2A 2FHQA 5BNCA 1JNWA 3ZOEA 2I51A 1AXJA 1RZ1A 1G76A 2I02A 3ZOHA 3PFTA 3R5RA 4HMSA 3IN6A 1DNLA 2HQ9A 2GJGA 3KYFA 3FKHA 2IG6A 2AQ6A 3BPKA 4HMXA 2E83A 5ESCA 1WLIA 2IMLA 2FG9A 3A6RA 3E4VA 1RZ0A 3A20A 3R5YA 4N7RC 1CI0A 2VPAA 3AMFA 1WLKA 2PTFA 3GASA 3AWHA 5CHEC 2D38A 4IRAA 2D37A 2NR4A 2X1JA 2Q9KA 3R5WA 5JABA 3DB0A 2HHZA 5CHOA 3TGVA 1YOAA 3HMZA 4HMVA 1G77A 4HMWA 3ZOGA 3SWJA 3U5WA 2ARZA 3RH7A 3U34A 3HY8A 2FURA 4HX6A 1XXOA 3BA3A 1WV4A 3NFWA 1FLMA 1USCA 3B5MA 1I0RA 1USFA 2QCKA 1NRGA 2R0XA 4HMUA 2A2JA 3K86A 3EC6A 2D36A 3VY5A 1VL7A
chains in the Genus database with same CATH superfamily

4L82A 3DMBA 3U35A 3FGEA 3R5ZA 4MTKA 2ECUA 2RDEA 4UHVA 3VY2A 1W3RA 3A6QA 4QVBA 1TY9A 2OU5A 3CB0A 4F07A 2D5MA 1YLNA 2X1KA 4YWNA 4HKHA 2QEAA 3CP3A 4R82A 2RE7A 3DNHA 3R5PA 4W64A 4YBNA 4Z85A 3V4HA 2HQ7A 1W9AA 2ASFA 3HE1A 2L1TA 3K87A 2K4QA 1W3PA 1W3QA 3ZOFA 3ZODA 3BNKA 3ZOCA 3KYGA 3F7EA 4Y9IA 1Y30A 1WGBA 2R6VA 3EAAA 3H96A 1EJEA 2IABA 2HTDA 2ED4A 4ZKYA 3VYAA 3K88A 4TV4A 1W3OA 2ECRA 1T9MA 1G79A 1I0SA 3R5LA 1XHNA 2HTIA 2OL5A 3U0IA 1G78A 1RFEA 4HMTA 4XHYA 4XJ2A 2FHQA 5BNCA 1JNWA 3ZOEA 2I51A 1AXJA 1RZ1A 1G76A 2I02A 3ZOHA 3PFTA 3R5RA 1Y12A 3IN6A 4HMSA 1DNLA 2HQ9A 2GJGA 3KYFA 3FKHA 2IG6A 2AQ6A 3BPKA 4HMXA 2E83A 5ESCA 1WLIA 2GUJA 2IMLA 2FG9A 3A6RA 3E4VA 2P5ZX 1RZ0A 3A20A 3R5YA 4N7RC 1CI0A 2VPAA 3AMFA 1WLKA 2PTFA 3GASA 3AWHA 5CHEC 2D38A 4IRAA 2D37A 2NR4A 2X1JA 2Q9KA 3R5WA 5JABA 3DB0A 2HHZA 5CHOA 3TGVA 1YOAA 3HMZA 4HMVA 1G77A 4HMWA 3ZOGA 3SWJA 3U5WA 2ARZA 3RH7A 3U34A 3HY8A 2FURA 4HX6A 1XXOA 3BA3A 1WV4A 3NFWA 1FLMA 1USCA 3B5MA 1I0RA 1USFA 2QCKA 1NRGA 2R0XA 4HMUA 2A2JA 3K86A 3EC6A 2D36A 3VY5A 1VL7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4L82 A;  3DMB A;  3U35 A;  3FGE A;  3R5Z A;  3VY2 A;  2ECU A;  2RDE A;  1W3R A;  3A6Q A;  4QVB A;  1TY9 A;  2OU5 A;  3CB0 A;  4F07 A;  2D5M A;  1YLN A;  2X1K A;  4YWN A;  2QEA A;  3CP3 A;  4R82 A;  2RE7 A;  3DNH A;  3R5P A;  4YBN A;  4Z85 A;  2HQ7 A;  1W9A A;  2ASF A;  3K87 A;  1W3P A;  1W3Q A;  3ZOF A;  3ZOD A;  3BNK A;  3ZOC A;  3KYG A;  3F7E A;  4Y9I A;  1Y30 A;  1WGB A;  2R6V A;  3H96 A;  1EJE A;  2IAB A;  2HTD A;  2ED4 A;  4ZKY A;  3VYA A;  3K88 A;  1W3O A;  2ECR A;  1T9M A;  1G79 A;  1I0S A;  3R5L A;  1XHN A;  2HTI A;  2OL5 A;  3U0I A;  1G78 A;  1RFE A;  4HMT A;  4XHY A;  4XJ2 A;  2FHQ A;  5BNC A;  1JNW A;  3ZOE A;  2I51 A;  1AXJ A;  1RZ1 A;  1G76 A;  2I02 A;  3ZOH A;  3PFT A;  3R5R A;  4HMS A;  3IN6 A;  1DNL A;  2HQ9 A;  2GJG A;  3KYF A;  3FKH A;  2IG6 A;  2AQ6 A;  3BPK A;  4HMX A;  2E83 A;  5ESC A;  1WLI A;  2IML A;  2FG9 A;  3A6R A;  3E4V A;  1RZ0 A;  3A20 A;  3R5Y A;  4N7R C;  1CI0 A;  2VPA A;  3AMF A;  1WLK A;  2PTF A;  3GAS A;  3AWH A;  5CHE C;  2D38 A;  4IRA A;  2D37 A;  2NR4 A;  2X1J A;  2Q9K A;  3R5W A;  5JAB A;  3DB0 A;  2HHZ A;  5CHO A;  3TGV A;  1YOA A;  3HMZ A;  4HMV A;  1G77 A;  4HMW A;  3ZOG A;  3SWJ A;  3U5W A;  2ARZ A;  3RH7 A;  3U34 A;  3HY8 A;  2FUR A;  4HX6 A;  1XXO A;  3BA3 A;  1WV4 A;  3NFW A;  1FLM A;  1USC A;  3B5M A;  1I0R A;  1USF A;  2QCK A;  1NRG A;  2R0X A;  4HMU A;  2A2J A;  3K86 A;  3EC6 A;  2D36 A;  3VY5 A;  1VL7 A; 
#chains in the Genus database with same CATH topology
 4L82 A;  3DMB A;  3U35 A;  3FGE A;  3R5Z A;  4MTK A;  2ECU A;  2RDE A;  4UHV A;  3VY2 A;  1W3R A;  3A6Q A;  4QVB A;  1TY9 A;  2OU5 A;  3CB0 A;  4F07 A;  2D5M A;  1YLN A;  2X1K A;  4YWN A;  4HKH A;  2QEA A;  3CP3 A;  4R82 A;  2RE7 A;  3DNH A;  3R5P A;  4W64 A;  4YBN A;  4Z85 A;  3V4H A;  2HQ7 A;  1W9A A;  2ASF A;  3HE1 A;  2L1T A;  3K87 A;  2K4Q A;  1W3P A;  1W3Q A;  3ZOF A;  3ZOD A;  3BNK A;  3ZOC A;  3KYG A;  3F7E A;  4Y9I A;  1Y30 A;  1WGB A;  2R6V A;  3EAA A;  3H96 A;  1EJE A;  2IAB A;  2HTD A;  2ED4 A;  4ZKY A;  3VYA A;  3K88 A;  4TV4 A;  1W3O A;  2ECR A;  1T9M A;  1G79 A;  1I0S A;  3R5L A;  1XHN A;  2HTI A;  2OL5 A;  3U0I A;  1G78 A;  1RFE A;  4HMT A;  4XHY A;  4XJ2 A;  2FHQ A;  5BNC A;  1JNW A;  3ZOE A;  2I51 A;  1AXJ A;  1RZ1 A;  1G76 A;  2I02 A;  3ZOH A;  3PFT A;  3R5R A;  1Y12 A;  3IN6 A;  4HMS A;  1DNL A;  2HQ9 A;  2GJG A;  3KYF A;  3FKH A;  2IG6 A;  2AQ6 A;  3BPK A;  4HMX A;  2E83 A;  5ESC A;  1WLI A;  2GUJ A;  2IML A;  2FG9 A;  3A6R A;  3E4V A;  2P5Z X;  1RZ0 A;  3A20 A;  3R5Y A;  4N7R C;  1CI0 A;  2VPA A;  3AMF A;  1WLK A;  2PTF A;  3GAS A;  3AWH A;  5CHE C;  2D38 A;  4IRA A;  2D37 A;  2NR4 A;  2X1J A;  2Q9K A;  3R5W A;  5JAB A;  3DB0 A;  2HHZ A;  5CHO A;  3TGV A;  1YOA A;  3HMZ A;  4HMV A;  1G77 A;  4HMW A;  3ZOG A;  3SWJ A;  3U5W A;  2ARZ A;  3RH7 A;  3U34 A;  3HY8 A;  2FUR A;  4HX6 A;  1XXO A;  3BA3 A;  1WV4 A;  3NFW A;  1FLM A;  1USC A;  3B5M A;  1I0R A;  1USF A;  2QCK A;  1NRG A;  2R0X A;  4HMU A;  2A2J A;  3K86 A;  3EC6 A;  2D36 A;  3VY5 A;  1VL7 A; 
#chains in the Genus database with same CATH homology
 4L82 A;  3DMB A;  3U35 A;  3FGE A;  3R5Z A;  3VY2 A;  2ECU A;  2RDE A;  1W3R A;  3A6Q A;  4QVB A;  1TY9 A;  2OU5 A;  3CB0 A;  4F07 A;  2D5M A;  1YLN A;  2X1K A;  4YWN A;  2QEA A;  3CP3 A;  4R82 A;  2RE7 A;  3DNH A;  3R5P A;  4YBN A;  4Z85 A;  2HQ7 A;  1W9A A;  2ASF A;  3K87 A;  1W3P A;  1W3Q A;  3ZOF A;  3ZOD A;  3BNK A;  3ZOC A;  3KYG A;  3F7E A;  4Y9I A;  1Y30 A;  1WGB A;  2R6V A;  3H96 A;  1EJE A;  2IAB A;  2HTD A;  2ED4 A;  4ZKY A;  3VYA A;  3K88 A;  1W3O A;  2ECR A;  1T9M A;  1G79 A;  1I0S A;  3R5L A;  1XHN A;  2HTI A;  2OL5 A;  3U0I A;  1G78 A;  1RFE A;  4HMT A;  4XHY A;  4XJ2 A;  2FHQ A;  5BNC A;  1JNW A;  3ZOE A;  2I51 A;  1AXJ A;  1RZ1 A;  1G76 A;  2I02 A;  3ZOH A;  3PFT A;  3R5R A;  4HMS A;  3IN6 A;  1DNL A;  2HQ9 A;  2GJG A;  3KYF A;  3FKH A;  2IG6 A;  2AQ6 A;  3BPK A;  4HMX A;  2E83 A;  5ESC A;  1WLI A;  2IML A;  2FG9 A;  3A6R A;  3E4V A;  1RZ0 A;  3A20 A;  3R5Y A;  4N7R C;  1CI0 A;  2VPA A;  3AMF A;  1WLK A;  2PTF A;  3GAS A;  3AWH A;  5CHE C;  2D38 A;  4IRA A;  2D37 A;  2NR4 A;  2X1J A;  2Q9K A;  3R5W A;  5JAB A;  3DB0 A;  2HHZ A;  5CHO A;  3TGV A;  1YOA A;  3HMZ A;  4HMV A;  1G77 A;  4HMW A;  3ZOG A;  3SWJ A;  3U5W A;  2ARZ A;  3RH7 A;  3U34 A;  3HY8 A;  2FUR A;  4HX6 A;  1XXO A;  3BA3 A;  1WV4 A;  3NFW A;  1FLM A;  1USC A;  3B5M A;  1I0R A;  1USF A;  2QCK A;  1NRG A;  2R0X A;  4HMU A;  2A2J A;  3K86 A;  3EC6 A;  2D36 A;  3VY5 A;  1VL7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2HQ9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations