2IABA

Crystal structure of a protein with fmn-binding split barrel fold (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
153
structure length
153
Chain Sequence
TTPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATPAASPTGRNLSETGRVRLGIGPTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFRISPRRVQAWREANELSGRELMRDGEWLVTD
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (9-22)S6 (120-133)3H2 (136-138)TIV3 (138-141)TII1 (78-81)S2 (38-47)AH3 (101-109)AH2 (61-69)S1 (25-31)EMPTYS3 (52-57)TIV1 (48-51)S5 (82-92)TI3 (93-96)TI4 (94-97)TII2 (98-101)3H1 (113-115)TI'1 (146-149)TII3 (139-142)S4 (71-76)TI2 (57-60)Updating...
connected with : NaN
publication title Crystal structure of hypothetical protein (NP_828636.1) from STREPTOMYCES AVERMITILIS at 2.00 A resolution
rcsb
molecule keywords Hypothetical protein
molecule tags Unknown function
source organism Streptomyces avermitilis
total genus 36
structure length 153
sequence length 153
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2iabA01
4YBNA 2FG9A 2X1KA 5ESCA 1VL7A 3U5WA 3DNHA 2D36A 4YWNA 3ZOEA 3R5RA 3E4VA 3K87A 1W3PA 3AWHA 4HMUA 1W3QA 4R82A 4L82A 3FGEA 2R6VA 3GASA 3A6QA 2HQ9A 1WLIA 1WGBA 5JABA 2QEAA 3K88A 1W9AA 2FURA 2HTIA 4HMTA 3ZOHA 3BA3A 4HMXA 4XHYA 2IABA 2ECRA 4HMVA 2PTFA 2ECUA 1TY9A 3H96A 4HMWA 3IN6A 3ZODA 2X1JA 1XHNA 3VY5A 3VYAA 3B5MA 1XXOA 1AXJA 2OU5A 2HHZA 3DB0A 1WV4A 3SWJA 3KYFA 1W3RA 2GJGA 1FLMA 3A20A 3U34A 4ZKYA 3F7EA 3PFTA 4F07A 2RE7A 1G76A 5CHOA 1CI0A 3ZOGA 2IG6A 2R0XA 1WLKA 1YLNA 3NFWA 1I0RA 1NRGA 4N7RC 1USCA 1DNLA 3BPKA 3EC6A 3ZOFA 2RDEA 4XJ2A 1W3OA 2A2JA 2HTDA 4Y9IA 1JNWA 2I02A 2I51A 3R5ZA 3ZOCA 3R5PA 1YOAA 1G77A 1G79A 1Y30A 4QVBA 5CHEC 2QCKA 3FKHA 3CB0A 1I0SA 3HY8A 3RH7A 3A6RA 3HMZA 3AMFA 1RFEA 3BNKA 3KYGA 2AQ6A 1T9MA 3DMBA 2ASFA 1EJEA 2D38A 3U35A 1RZ1A 2ARZA 2FHQA 2IMLA 3K86A 4Z85A 3VY2A 3TGVA 2NR4A 2E83A 3R5LA 1RZ0A 2ED4A 2Q9KA 2D5MA 4IRAA 5BNCA 2D37A 2VPAA 3U0IA 4HMSA 3CP3A 4HX6A 1G78A 2HQ7A 3R5YA 2OL5A 1USFA 3R5WA
chains in the Genus database with same CATH superfamily
4YBNA 2FG9A 2X1KA 5ESCA 1VL7A 3U5WA 3DNHA 2D36A 4YWNA 3ZOEA 3R5RA 3E4VA 3K87A 1W3PA 2K4QA 3AWHA 4HMUA 1W3QA 4R82A 4L82A 3FGEA 3EAAA 2R6VA 3GASA 3A6QA 2HQ9A 1WLIA 1WGBA 5JABA 2QEAA 3K88A 1W9AA 2FURA 2HTIA 4HMTA 3ZOHA 4MTKA 3BA3A 3HE1A 4HMXA 4XHYA 2IABA 2ECRA 4HMVA 2PTFA 2ECUA 1TY9A 3H96A 4HMWA 3IN6A 3ZODA 2X1JA 1XHNA 3VY5A 3VYAA 3B5MA 1XXOA 1AXJA 2OU5A 2HHZA 3DB0A 1WV4A 3SWJA 3KYFA 1W3RA 2GJGA 1FLMA 3A20A 3U34A 4ZKYA 3F7EA 3PFTA 4TV4A 4F07A 2RE7A 1G76A 5CHOA 2P5ZX 1CI0A 2GUJA 3ZOGA 2IG6A 2R0XA 1WLKA 1YLNA 3NFWA 1I0RA 1NRGA 4N7RC 1USCA 1DNLA 3BPKA 3EC6A 3ZOFA 2RDEA 4XJ2A 1W3OA 2A2JA 2HTDA 4Y9IA 4UHVA 1JNWA 2I02A 2I51A 3R5ZA 3ZOCA 3R5PA 1YOAA 1G77A 1G79A 1Y30A 4QVBA 5CHEC 3V4HA 2QCKA 3FKHA 3CB0A 1I0SA 3HY8A 3RH7A 3A6RA 3HMZA 3AMFA 1RFEA 3BNKA 3KYGA 2AQ6A 1T9MA 3DMBA 2ASFA 1EJEA 2D38A 3U35A 2L1TA 4W64A 1RZ1A 2ARZA 2FHQA 2IMLA 3K86A 4Z85A 3VY2A 3TGVA 2NR4A 2E83A 3R5LA 4HKHA 1RZ0A 2ED4A 2Q9KA 2D5MA 4IRAA 5BNCA 2D37A 2VPAA 3U0IA 4HMSA 1Y12A 3CP3A 4HX6A 1G78A 2HQ7A 3R5YA 2OL5A 1USFA 3R5WA
chains in the Genus database with same CATH topology
4YBNA 2FG9A 2X1KA 5ESCA 1VL7A 3U5WA 3DNHA 2D36A 4YWNA 3ZOEA 3R5RA 3E4VA 3K87A 1W3PA 3AWHA 4HMUA 1W3QA 4R82A 4L82A 3FGEA 2R6VA 3GASA 3A6QA 2HQ9A 1WLIA 1WGBA 5JABA 2QEAA 3K88A 1W9AA 2FURA 2HTIA 4HMTA 3ZOHA 3BA3A 4HMXA 4XHYA 2IABA 2ECRA 4HMVA 2PTFA 2ECUA 1TY9A 3H96A 4HMWA 3IN6A 3ZODA 2X1JA 1XHNA 3VY5A 3VYAA 3B5MA 1XXOA 1AXJA 2OU5A 2HHZA 3DB0A 1WV4A 3SWJA 3KYFA 1W3RA 2GJGA 1FLMA 3A20A 3U34A 4ZKYA 3F7EA 3PFTA 4F07A 2RE7A 1G76A 5CHOA 1CI0A 3ZOGA 2IG6A 2R0XA 1WLKA 1YLNA 3NFWA 1I0RA 1NRGA 4N7RC 1USCA 1DNLA 3BPKA 3EC6A 3ZOFA 2RDEA 4XJ2A 1W3OA 2A2JA 2HTDA 4Y9IA 1JNWA 2I02A 2I51A 3R5ZA 3ZOCA 3R5PA 1YOAA 1G77A 1G79A 1Y30A 4QVBA 5CHEC 2QCKA 3FKHA 3CB0A 1I0SA 3HY8A 3RH7A 3A6RA 3HMZA 3AMFA 1RFEA 3BNKA 3KYGA 2AQ6A 1T9MA 3DMBA 2ASFA 1EJEA 2D38A 3U35A 1RZ1A 2ARZA 2FHQA 2IMLA 3K86A 4Z85A 3VY2A 3TGVA 2NR4A 2E83A 3R5LA 1RZ0A 2ED4A 2Q9KA 2D5MA 4IRAA 5BNCA 2D37A 2VPAA 3U0IA 4HMSA 3CP3A 4HX6A 1G78A 2HQ7A 3R5YA 2OL5A 1USFA 3R5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YBN A;  2FG9 A;  2X1K A;  5ESC A;  1VL7 A;  3U5W A;  3DNH A;  2D36 A;  4YWN A;  3ZOE A;  3R5R A;  3E4V A;  3K87 A;  1W3P A;  3AWH A;  4HMU A;  1W3Q A;  4R82 A;  4L82 A;  3FGE A;  2R6V A;  3GAS A;  3A6Q A;  2HQ9 A;  1WLI A;  1WGB A;  5JAB A;  2QEA A;  3K88 A;  1W9A A;  2FUR A;  2HTI A;  4HMT A;  3ZOH A;  3BA3 A;  4HMX A;  4XHY A;  2IAB A;  2ECR A;  4HMV A;  2PTF A;  2ECU A;  1TY9 A;  3H96 A;  4HMW A;  3IN6 A;  3ZOD A;  2X1J A;  1XHN A;  3VY5 A;  3VYA A;  3B5M A;  1XXO A;  1AXJ A;  2OU5 A;  2HHZ A;  3DB0 A;  1WV4 A;  3SWJ A;  3KYF A;  1W3R A;  2GJG A;  1FLM A;  3A20 A;  3U34 A;  4ZKY A;  3F7E A;  3PFT A;  4F07 A;  2RE7 A;  1G76 A;  5CHO A;  1CI0 A;  3ZOG A;  2IG6 A;  2R0X A;  1WLK A;  1YLN A;  3NFW A;  1I0R A;  1NRG A;  4N7R C;  1USC A;  1DNL A;  3BPK A;  3EC6 A;  3ZOF A;  2RDE A;  4XJ2 A;  1W3O A;  2A2J A;  2HTD A;  4Y9I A;  1JNW A;  2I02 A;  2I51 A;  3R5Z A;  3ZOC A;  3R5P A;  1YOA A;  1G77 A;  1G79 A;  1Y30 A;  4QVB A;  5CHE C;  2QCK A;  3FKH A;  3CB0 A;  1I0S A;  3HY8 A;  3RH7 A;  3A6R A;  3HMZ A;  3AMF A;  1RFE A;  3BNK A;  3KYG A;  2AQ6 A;  1T9M A;  3DMB A;  2ASF A;  1EJE A;  2D38 A;  3U35 A;  1RZ1 A;  2ARZ A;  2FHQ A;  2IML A;  3K86 A;  4Z85 A;  3VY2 A;  3TGV A;  2NR4 A;  2E83 A;  3R5L A;  1RZ0 A;  2ED4 A;  2Q9K A;  2D5M A;  4IRA A;  5BNC A;  2D37 A;  2VPA A;  3U0I A;  4HMS A;  3CP3 A;  4HX6 A;  1G78 A;  2HQ7 A;  3R5Y A;  2OL5 A;  1USF A;  3R5W A; 
#chains in the Genus database with same CATH topology
 4YBN A;  2FG9 A;  2X1K A;  5ESC A;  1VL7 A;  3U5W A;  3DNH A;  2D36 A;  4YWN A;  3ZOE A;  3R5R A;  3E4V A;  3K87 A;  1W3P A;  2K4Q A;  3AWH A;  4HMU A;  1W3Q A;  4R82 A;  4L82 A;  3FGE A;  3EAA A;  2R6V A;  3GAS A;  3A6Q A;  2HQ9 A;  1WLI A;  1WGB A;  5JAB A;  2QEA A;  3K88 A;  1W9A A;  2FUR A;  2HTI A;  4HMT A;  3ZOH A;  4MTK A;  3BA3 A;  3HE1 A;  4HMX A;  4XHY A;  2IAB A;  2ECR A;  4HMV A;  2PTF A;  2ECU A;  1TY9 A;  3H96 A;  4HMW A;  3IN6 A;  3ZOD A;  2X1J A;  1XHN A;  3VY5 A;  3VYA A;  3B5M A;  1XXO A;  1AXJ A;  2OU5 A;  2HHZ A;  3DB0 A;  1WV4 A;  3SWJ A;  3KYF A;  1W3R A;  2GJG A;  1FLM A;  3A20 A;  3U34 A;  4ZKY A;  3F7E A;  3PFT A;  4TV4 A;  4F07 A;  2RE7 A;  1G76 A;  5CHO A;  2P5Z X;  1CI0 A;  2GUJ A;  3ZOG A;  2IG6 A;  2R0X A;  1WLK A;  1YLN A;  3NFW A;  1I0R A;  1NRG A;  4N7R C;  1USC A;  1DNL A;  3BPK A;  3EC6 A;  3ZOF A;  2RDE A;  4XJ2 A;  1W3O A;  2A2J A;  2HTD A;  4Y9I A;  4UHV A;  1JNW A;  2I02 A;  2I51 A;  3R5Z A;  3ZOC A;  3R5P A;  1YOA A;  1G77 A;  1G79 A;  1Y30 A;  4QVB A;  5CHE C;  3V4H A;  2QCK A;  3FKH A;  3CB0 A;  1I0S A;  3HY8 A;  3RH7 A;  3A6R A;  3HMZ A;  3AMF A;  1RFE A;  3BNK A;  3KYG A;  2AQ6 A;  1T9M A;  3DMB A;  2ASF A;  1EJE A;  2D38 A;  3U35 A;  2L1T A;  4W64 A;  1RZ1 A;  2ARZ A;  2FHQ A;  2IML A;  3K86 A;  4Z85 A;  3VY2 A;  3TGV A;  2NR4 A;  2E83 A;  3R5L A;  4HKH A;  1RZ0 A;  2ED4 A;  2Q9K A;  2D5M A;  4IRA A;  5BNC A;  2D37 A;  2VPA A;  3U0I A;  4HMS A;  1Y12 A;  3CP3 A;  4HX6 A;  1G78 A;  2HQ7 A;  3R5Y A;  2OL5 A;  1USF A;  3R5W A; 
#chains in the Genus database with same CATH homology
 4YBN A;  2FG9 A;  2X1K A;  5ESC A;  1VL7 A;  3U5W A;  3DNH A;  2D36 A;  4YWN A;  3ZOE A;  3R5R A;  3E4V A;  3K87 A;  1W3P A;  3AWH A;  4HMU A;  1W3Q A;  4R82 A;  4L82 A;  3FGE A;  2R6V A;  3GAS A;  3A6Q A;  2HQ9 A;  1WLI A;  1WGB A;  5JAB A;  2QEA A;  3K88 A;  1W9A A;  2FUR A;  2HTI A;  4HMT A;  3ZOH A;  3BA3 A;  4HMX A;  4XHY A;  2IAB A;  2ECR A;  4HMV A;  2PTF A;  2ECU A;  1TY9 A;  3H96 A;  4HMW A;  3IN6 A;  3ZOD A;  2X1J A;  1XHN A;  3VY5 A;  3VYA A;  3B5M A;  1XXO A;  1AXJ A;  2OU5 A;  2HHZ A;  3DB0 A;  1WV4 A;  3SWJ A;  3KYF A;  1W3R A;  2GJG A;  1FLM A;  3A20 A;  3U34 A;  4ZKY A;  3F7E A;  3PFT A;  4F07 A;  2RE7 A;  1G76 A;  5CHO A;  1CI0 A;  3ZOG A;  2IG6 A;  2R0X A;  1WLK A;  1YLN A;  3NFW A;  1I0R A;  1NRG A;  4N7R C;  1USC A;  1DNL A;  3BPK A;  3EC6 A;  3ZOF A;  2RDE A;  4XJ2 A;  1W3O A;  2A2J A;  2HTD A;  4Y9I A;  1JNW A;  2I02 A;  2I51 A;  3R5Z A;  3ZOC A;  3R5P A;  1YOA A;  1G77 A;  1G79 A;  1Y30 A;  4QVB A;  5CHE C;  2QCK A;  3FKH A;  3CB0 A;  1I0S A;  3HY8 A;  3RH7 A;  3A6R A;  3HMZ A;  3AMF A;  1RFE A;  3BNK A;  3KYG A;  2AQ6 A;  1T9M A;  3DMB A;  2ASF A;  1EJE A;  2D38 A;  3U35 A;  1RZ1 A;  2ARZ A;  2FHQ A;  2IML A;  3K86 A;  4Z85 A;  3VY2 A;  3TGV A;  2NR4 A;  2E83 A;  3R5L A;  1RZ0 A;  2ED4 A;  2Q9K A;  2D5M A;  4IRA A;  5BNC A;  2D37 A;  2VPA A;  3U0I A;  4HMS A;  3CP3 A;  4HX6 A;  1G78 A;  2HQ7 A;  3R5Y A;  2OL5 A;  1USF A;  3R5W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.