2IABA

Crystal structure of a protein with fmn-binding split barrel fold (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
153
structure length
153
Chain Sequence
TTPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATPAASPTGRNLSETGRVRLGIGPTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFRISPRRVQAWREANELSGRELMRDGEWLVTD
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (9-22)S6 (120-133)3H2 (136-138)TIV3 (138-141)TII1 (78-81)S2 (38-47)AH3 (101-109)AH2 (61-69)S1 (25-31)EMPTYS3 (52-57)TIV1 (48-51)S5 (82-92)TI3 (93-96)TI4 (94-97)TII2 (98-101)3H1 (113-115)TI'1 (146-149)TII3 (139-142)S4 (71-76)TI2 (57-60)Updating...
connected with : NaN
publication title Crystal structure of hypothetical protein (NP_828636.1) from STREPTOMYCES AVERMITILIS at 2.00 A resolution
rcsb
molecule keywords Hypothetical protein
molecule tags Unknown function
source organism Streptomyces avermitilis
total genus 36
structure length 153
sequence length 153
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2iabA01
2ASFA 1XHNA 3ZODA 3R5ZA 2R0XA 1FLMA 4IRAA 1Y30A 1WV4A 4F07A 3F7EA 1AXJA 3IN6A 5JABA 2ECUA 4YWNA 4HMSA 2D5MA 1XXOA 3VY5A 2A2JA 4XHYA 3A20A 3CP3A 4HMTA 2IABA 1G77A 4XJ2A 3VY2A 3K86A 2FG9A 3RH7A 2X1KA 2HQ7A 2X1JA 2QCKA 4YBNA 3NFWA 2ECRA 3ZOGA 3A6QA 1EJEA 3B5MA 4QVBA 4Y9IA 1I0RA 1W9AA 3ZOHA 3DB0A 3U35A 3R5PA 2D36A 3E4VA 3BNKA 4ZKYA 2OL5A 1TY9A 1W3OA 1I0SA 2FHQA 2D37A 3SWJA 2IG6A 1W3QA 3A6RA 1YLNA 5BNCA 1G79A 2OU5A 3DMBA 2IMLA 3K88A 3CB0A 3KYFA 1RZ0A 3R5WA 2HQ9A 1USCA 3BPKA 3AMFA 3K87A 1W3RA 4HX6A 2FURA 3HY8A 5CHEC 3AWHA 4L82A 2D38A 1DNLA 3FKHA 2QEAA 3VYAA 1JNWA 3EC6A 5CHOA 4R82A 2VPAA 2RE7A 1USFA 3ZOEA 1WLIA 3U0IA 2I51A 1G78A 3ZOFA 3DNHA 1WLKA 2I02A 1W3PA 2GJGA 2HHZA 1RZ1A 3FGEA 1WGBA 3GASA 2ARZA 3R5YA 3U34A 2E83A 2NR4A 4HMWA 3BA3A 3R5LA 4N7RC 2PTFA 5ESCA 1YOAA 1NRGA 3R5RA 3H96A 4HMUA 2AQ6A 3TGVA 3PFTA 1RFEA 2Q9KA 1VL7A 1CI0A 1T9MA 2R6VA 3HMZA 2RDEA 2HTDA 2HTIA 4Z85A 1G76A 2ED4A 4HMVA 3ZOCA 3U5WA 4HMXA 3KYGA
chains in the Genus database with same CATH superfamily
2GUJA 2P5ZX 2ASFA 1XHNA 3ZODA 3R5ZA 2R0XA 1FLMA 4IRAA 1Y30A 1WV4A 4F07A 3F7EA 1AXJA 3IN6A 5JABA 2ECUA 4YWNA 4HMSA 2D5MA 4TV4A 1XXOA 3VY5A 2A2JA 4XHYA 3A20A 3CP3A 4HMTA 3EAAA 2IABA 1G77A 4XJ2A 3VY2A 3K86A 2FG9A 3RH7A 2X1KA 2HQ7A 2X1JA 2QCKA 4YBNA 3NFWA 2ECRA 3ZOGA 3A6QA 1EJEA 3B5MA 4QVBA 4Y9IA 1I0RA 1W9AA 3ZOHA 3DB0A 3U35A 3R5PA 2D36A 3E4VA 3BNKA 4ZKYA 2OL5A 1TY9A 1W3OA 1I0SA 2FHQA 2D37A 3SWJA 2IG6A 1Y12A 1W3QA 3A6RA 1YLNA 5BNCA 1G79A 2OU5A 3DMBA 2IMLA 3K88A 3CB0A 3KYFA 1RZ0A 3R5WA 2HQ9A 1USCA 3BPKA 3AMFA 3K87A 1W3RA 4HX6A 2FURA 2L1TA 3HY8A 5CHEC 3AWHA 4L82A 2D38A 1DNLA 4MTKA 3FKHA 2QEAA 3VYAA 1JNWA 3EC6A 5CHOA 4W64A 4R82A 2VPAA 2RE7A 1USFA 3ZOEA 1WLIA 3U0IA 2I51A 1G78A 3ZOFA 3HE1A 3DNHA 1WLKA 2K4QA 2I02A 1W3PA 2GJGA 2HHZA 4HKHA 1RZ1A 3FGEA 1WGBA 3GASA 2ARZA 3R5YA 3U34A 2E83A 2NR4A 4HMWA 3BA3A 3R5LA 4N7RC 2PTFA 5ESCA 1YOAA 3V4HA 1NRGA 3R5RA 3H96A 4UHVA 4HMUA 2AQ6A 3TGVA 3PFTA 1RFEA 2Q9KA 1VL7A 1CI0A 1T9MA 2R6VA 3HMZA 2RDEA 2HTDA 2HTIA 4Z85A 1G76A 2ED4A 4HMVA 3ZOCA 3U5WA 4HMXA 3KYGA
chains in the Genus database with same CATH topology
2ASFA 1XHNA 3ZODA 3R5ZA 2R0XA 1FLMA 4IRAA 1Y30A 1WV4A 4F07A 3F7EA 1AXJA 3IN6A 5JABA 2ECUA 4YWNA 4HMSA 2D5MA 1XXOA 3VY5A 2A2JA 4XHYA 3A20A 3CP3A 4HMTA 2IABA 1G77A 4XJ2A 3VY2A 3K86A 2FG9A 3RH7A 2X1KA 2HQ7A 2X1JA 2QCKA 4YBNA 3NFWA 2ECRA 3ZOGA 3A6QA 1EJEA 3B5MA 4QVBA 4Y9IA 1I0RA 1W9AA 3ZOHA 3DB0A 3U35A 3R5PA 2D36A 3E4VA 3BNKA 4ZKYA 2OL5A 1TY9A 1W3OA 1I0SA 2FHQA 2D37A 3SWJA 2IG6A 1W3QA 3A6RA 1YLNA 5BNCA 1G79A 2OU5A 3DMBA 2IMLA 3K88A 3CB0A 3KYFA 1RZ0A 3R5WA 2HQ9A 1USCA 3BPKA 3AMFA 3K87A 1W3RA 4HX6A 2FURA 3HY8A 5CHEC 3AWHA 4L82A 2D38A 1DNLA 3FKHA 2QEAA 3VYAA 1JNWA 3EC6A 5CHOA 4R82A 2VPAA 2RE7A 1USFA 3ZOEA 1WLIA 3U0IA 2I51A 1G78A 3ZOFA 3DNHA 1WLKA 2I02A 1W3PA 2GJGA 2HHZA 1RZ1A 3FGEA 1WGBA 3GASA 2ARZA 3R5YA 3U34A 2E83A 2NR4A 4HMWA 3BA3A 3R5LA 4N7RC 2PTFA 5ESCA 1YOAA 1NRGA 3R5RA 3H96A 4HMUA 2AQ6A 3TGVA 3PFTA 1RFEA 2Q9KA 1VL7A 1CI0A 1T9MA 2R6VA 3HMZA 2RDEA 2HTDA 2HTIA 4Z85A 1G76A 2ED4A 4HMVA 3ZOCA 3U5WA 4HMXA 3KYGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ASF A;  1XHN A;  3ZOD A;  3R5Z A;  2R0X A;  1FLM A;  4IRA A;  1Y30 A;  1WV4 A;  4F07 A;  3F7E A;  1AXJ A;  3IN6 A;  5JAB A;  2ECU A;  4YWN A;  4HMS A;  2D5M A;  1XXO A;  3VY5 A;  2A2J A;  4XHY A;  3A20 A;  3CP3 A;  4HMT A;  2IAB A;  1G77 A;  4XJ2 A;  3VY2 A;  3K86 A;  2FG9 A;  3RH7 A;  2X1K A;  2HQ7 A;  2X1J A;  2QCK A;  4YBN A;  3NFW A;  2ECR A;  3ZOG A;  3A6Q A;  1EJE A;  3B5M A;  4QVB A;  4Y9I A;  1I0R A;  1W9A A;  3ZOH A;  3DB0 A;  3U35 A;  3R5P A;  2D36 A;  3E4V A;  3BNK A;  4ZKY A;  2OL5 A;  1TY9 A;  1W3O A;  1I0S A;  2FHQ A;  2D37 A;  3SWJ A;  2IG6 A;  1W3Q A;  3A6R A;  1YLN A;  5BNC A;  1G79 A;  2OU5 A;  3DMB A;  2IML A;  3K88 A;  3CB0 A;  3KYF A;  1RZ0 A;  3R5W A;  2HQ9 A;  1USC A;  3BPK A;  3AMF A;  3K87 A;  1W3R A;  4HX6 A;  2FUR A;  3HY8 A;  5CHE C;  3AWH A;  4L82 A;  2D38 A;  1DNL A;  3FKH A;  2QEA A;  3VYA A;  1JNW A;  3EC6 A;  5CHO A;  4R82 A;  2VPA A;  2RE7 A;  1USF A;  3ZOE A;  1WLI A;  3U0I A;  2I51 A;  1G78 A;  3ZOF A;  3DNH A;  1WLK A;  2I02 A;  1W3P A;  2GJG A;  2HHZ A;  1RZ1 A;  3FGE A;  1WGB A;  3GAS A;  2ARZ A;  3R5Y A;  3U34 A;  2E83 A;  2NR4 A;  4HMW A;  3BA3 A;  3R5L A;  4N7R C;  2PTF A;  5ESC A;  1YOA A;  1NRG A;  3R5R A;  3H96 A;  4HMU A;  2AQ6 A;  3TGV A;  3PFT A;  1RFE A;  2Q9K A;  1VL7 A;  1CI0 A;  1T9M A;  2R6V A;  3HMZ A;  2RDE A;  2HTD A;  2HTI A;  4Z85 A;  1G76 A;  2ED4 A;  4HMV A;  3ZOC A;  3U5W A;  4HMX A;  3KYG A; 
#chains in the Genus database with same CATH topology
 2GUJ A;  2P5Z X;  2ASF A;  1XHN A;  3ZOD A;  3R5Z A;  2R0X A;  1FLM A;  4IRA A;  1Y30 A;  1WV4 A;  4F07 A;  3F7E A;  1AXJ A;  3IN6 A;  5JAB A;  2ECU A;  4YWN A;  4HMS A;  2D5M A;  4TV4 A;  1XXO A;  3VY5 A;  2A2J A;  4XHY A;  3A20 A;  3CP3 A;  4HMT A;  3EAA A;  2IAB A;  1G77 A;  4XJ2 A;  3VY2 A;  3K86 A;  2FG9 A;  3RH7 A;  2X1K A;  2HQ7 A;  2X1J A;  2QCK A;  4YBN A;  3NFW A;  2ECR A;  3ZOG A;  3A6Q A;  1EJE A;  3B5M A;  4QVB A;  4Y9I A;  1I0R A;  1W9A A;  3ZOH A;  3DB0 A;  3U35 A;  3R5P A;  2D36 A;  3E4V A;  3BNK A;  4ZKY A;  2OL5 A;  1TY9 A;  1W3O A;  1I0S A;  2FHQ A;  2D37 A;  3SWJ A;  2IG6 A;  1Y12 A;  1W3Q A;  3A6R A;  1YLN A;  5BNC A;  1G79 A;  2OU5 A;  3DMB A;  2IML A;  3K88 A;  3CB0 A;  3KYF A;  1RZ0 A;  3R5W A;  2HQ9 A;  1USC A;  3BPK A;  3AMF A;  3K87 A;  1W3R A;  4HX6 A;  2FUR A;  2L1T A;  3HY8 A;  5CHE C;  3AWH A;  4L82 A;  2D38 A;  1DNL A;  4MTK A;  3FKH A;  2QEA A;  3VYA A;  1JNW A;  3EC6 A;  5CHO A;  4W64 A;  4R82 A;  2VPA A;  2RE7 A;  1USF A;  3ZOE A;  1WLI A;  3U0I A;  2I51 A;  1G78 A;  3ZOF A;  3HE1 A;  3DNH A;  1WLK A;  2K4Q A;  2I02 A;  1W3P A;  2GJG A;  2HHZ A;  4HKH A;  1RZ1 A;  3FGE A;  1WGB A;  3GAS A;  2ARZ A;  3R5Y A;  3U34 A;  2E83 A;  2NR4 A;  4HMW A;  3BA3 A;  3R5L A;  4N7R C;  2PTF A;  5ESC A;  1YOA A;  3V4H A;  1NRG A;  3R5R A;  3H96 A;  4UHV A;  4HMU A;  2AQ6 A;  3TGV A;  3PFT A;  1RFE A;  2Q9K A;  1VL7 A;  1CI0 A;  1T9M A;  2R6V A;  3HMZ A;  2RDE A;  2HTD A;  2HTI A;  4Z85 A;  1G76 A;  2ED4 A;  4HMV A;  3ZOC A;  3U5W A;  4HMX A;  3KYG A; 
#chains in the Genus database with same CATH homology
 2ASF A;  1XHN A;  3ZOD A;  3R5Z A;  2R0X A;  1FLM A;  4IRA A;  1Y30 A;  1WV4 A;  4F07 A;  3F7E A;  1AXJ A;  3IN6 A;  5JAB A;  2ECU A;  4YWN A;  4HMS A;  2D5M A;  1XXO A;  3VY5 A;  2A2J A;  4XHY A;  3A20 A;  3CP3 A;  4HMT A;  2IAB A;  1G77 A;  4XJ2 A;  3VY2 A;  3K86 A;  2FG9 A;  3RH7 A;  2X1K A;  2HQ7 A;  2X1J A;  2QCK A;  4YBN A;  3NFW A;  2ECR A;  3ZOG A;  3A6Q A;  1EJE A;  3B5M A;  4QVB A;  4Y9I A;  1I0R A;  1W9A A;  3ZOH A;  3DB0 A;  3U35 A;  3R5P A;  2D36 A;  3E4V A;  3BNK A;  4ZKY A;  2OL5 A;  1TY9 A;  1W3O A;  1I0S A;  2FHQ A;  2D37 A;  3SWJ A;  2IG6 A;  1W3Q A;  3A6R A;  1YLN A;  5BNC A;  1G79 A;  2OU5 A;  3DMB A;  2IML A;  3K88 A;  3CB0 A;  3KYF A;  1RZ0 A;  3R5W A;  2HQ9 A;  1USC A;  3BPK A;  3AMF A;  3K87 A;  1W3R A;  4HX6 A;  2FUR A;  3HY8 A;  5CHE C;  3AWH A;  4L82 A;  2D38 A;  1DNL A;  3FKH A;  2QEA A;  3VYA A;  1JNW A;  3EC6 A;  5CHO A;  4R82 A;  2VPA A;  2RE7 A;  1USF A;  3ZOE A;  1WLI A;  3U0I A;  2I51 A;  1G78 A;  3ZOF A;  3DNH A;  1WLK A;  2I02 A;  1W3P A;  2GJG A;  2HHZ A;  1RZ1 A;  3FGE A;  1WGB A;  3GAS A;  2ARZ A;  3R5Y A;  3U34 A;  2E83 A;  2NR4 A;  4HMW A;  3BA3 A;  3R5L A;  4N7R C;  2PTF A;  5ESC A;  1YOA A;  1NRG A;  3R5R A;  3H96 A;  4HMU A;  2AQ6 A;  3TGV A;  3PFT A;  1RFE A;  2Q9K A;  1VL7 A;  1CI0 A;  1T9M A;  2R6V A;  3HMZ A;  2RDE A;  2HTD A;  2HTI A;  4Z85 A;  1G76 A;  2ED4 A;  4HMV A;  3ZOC A;  3U5W A;  4HMX A;  3KYG A; 
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