2IABA

Crystal structure of a protein with fmn-binding split barrel fold (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
153
structure length
153
Chain Sequence
TTPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATPAASPTGRNLSETGRVRLGIGPTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFRISPRRVQAWREANELSGRELMRDGEWLVTD
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (9-22)S6 (120-133)3H2 (136-138)TIV3 (138-141)TII1 (78-81)S2 (38-47)AH3 (101-109)AH2 (61-69)S1 (25-31)EMPTYS3 (52-57)TIV1 (48-51)S5 (82-92)TI3 (93-96)TI4 (94-97)TII2 (98-101)3H1 (113-115)TI'1 (146-149)TII3 (139-142)S4 (71-76)TI2 (57-60)Updating...
connected with : NaN
publication title Crystal structure of hypothetical protein (NP_828636.1) from STREPTOMYCES AVERMITILIS at 2.00 A resolution
rcsb
molecule keywords Hypothetical protein
molecule tags Unknown function
source organism Streptomyces avermitilis
total genus 36
structure length 153
sequence length 153
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2iabA01
2ECRA 2NR4A 3DNHA 3GASA 3VYAA 4XJ2A 1EJEA 2QCKA 1YOAA 4F07A 2ARZA 2HTDA 3FKHA 2X1KA 3E4VA 3R5WA 3K88A 1VL7A 4ZKYA 1G78A 1I0SA 2FG9A 1DNLA 3K87A 3R5RA 1RFEA 1TY9A 2VPAA 3R5LA 3U5WA 1W3QA 3VY2A 5BNCA 2D37A 3HMZA 3ZOEA 2HTIA 3IN6A 1USCA 2IMLA 1YLNA 2D5MA 2R6VA 1I0RA 3CP3A 3U34A 4N7RC 2R0XA 2Q9KA 3U0IA 2X1JA 3B5MA 3ZODA 1RZ1A 2ED4A 3ZOFA 1G77A 3DMBA 5ESCA 2RDEA 1AXJA 1WLKA 3K86A 2GJGA 2HQ9A 2IG6A 4IRAA 1RZ0A 4HMTA 2HHZA 3NFWA 3KYGA 4QVBA 3BNKA 1W9AA 3PFTA 2D36A 2AQ6A 3ZOGA 3FGEA 3A20A 2ASFA 1WLIA 2I02A 1WGBA 2D38A 3F7EA 3R5PA 3KYFA 1CI0A 3A6RA 5JABA 4HMVA 3AMFA 2I51A 2FURA 1W3OA 1FLMA 3EC6A 3CB0A 2QEAA 4HMSA 1W3RA 1W3PA 2OU5A 3ZOCA 5CHOA 3VY5A 1Y30A 4Y9IA 4HMWA 1USFA 4L82A 4YBNA 1G76A 1JNWA 4XHYA 3BPKA 4YWNA 2IABA 4HMXA 3HY8A 3SWJA 1G79A 1XXOA 3R5YA 2A2JA 1XHNA 3R5ZA 3H96A 4HX6A 4R82A 2RE7A 3RH7A 1T9MA 3TGVA 2OL5A 3AWHA 3BA3A 5CHEC 4Z85A 2PTFA 1WV4A 2E83A 3ZOHA 3A6QA 2HQ7A 3DB0A 3U35A 2FHQA 4HMUA 1NRGA 2ECUA
chains in the Genus database with same CATH superfamily
2ECRA 2NR4A 3DNHA 3GASA 3VYAA 4XJ2A 1EJEA 2QCKA 1YOAA 4F07A 2ARZA 2HTDA 3FKHA 2X1KA 3E4VA 3R5WA 3K88A 2K4QA 1VL7A 4ZKYA 1G78A 1I0SA 2FG9A 1DNLA 3K87A 3R5RA 1RFEA 1TY9A 2VPAA 3R5LA 3U5WA 1W3QA 3VY2A 5BNCA 2D37A 3HMZA 3ZOEA 2HTIA 3IN6A 2L1TA 1USCA 2IMLA 2GUJA 1YLNA 2D5MA 2R6VA 1I0RA 3CP3A 3U34A 4N7RC 2R0XA 2Q9KA 3U0IA 3V4HA 2X1JA 3B5MA 4UHVA 1RZ1A 2ED4A 3ZODA 3ZOFA 1G77A 3DMBA 5ESCA 2RDEA 1AXJA 1WLKA 3K86A 2GJGA 2HQ9A 2IG6A 4IRAA 1RZ0A 4HMTA 2HHZA 3NFWA 3KYGA 4QVBA 3BNKA 1W9AA 3PFTA 2D36A 2AQ6A 3ZOGA 3FGEA 3A20A 2ASFA 1WLIA 2I02A 1WGBA 1Y12A 2D38A 3F7EA 3R5PA 3KYFA 1CI0A 3A6RA 5JABA 4HMVA 3AMFA 2I51A 4MTKA 2FURA 1W3OA 1FLMA 3EC6A 4TV4A 3CB0A 2QEAA 3HE1A 4HMSA 1W3RA 1W3PA 2OU5A 3ZOCA 5CHOA 3VY5A 1Y30A 4Y9IA 4HMWA 4W64A 1USFA 4L82A 4YBNA 1G76A 1JNWA 4XHYA 3BPKA 4YWNA 2IABA 4HMXA 3HY8A 3SWJA 1G79A 4HKHA 1XXOA 3R5YA 2A2JA 1XHNA 3R5ZA 3H96A 4HX6A 4R82A 2RE7A 3RH7A 1T9MA 3TGVA 2OL5A 3AWHA 3BA3A 3EAAA 2P5ZX 5CHEC 4Z85A 2PTFA 1WV4A 2E83A 3ZOHA 3A6QA 2HQ7A 3DB0A 3U35A 2FHQA 4HMUA 1NRGA 2ECUA
chains in the Genus database with same CATH topology
2ECRA 2NR4A 3DNHA 3GASA 3VYAA 4XJ2A 1EJEA 2QCKA 1YOAA 4F07A 2ARZA 2HTDA 3FKHA 2X1KA 3E4VA 3R5WA 3K88A 1VL7A 4ZKYA 1G78A 1I0SA 2FG9A 1DNLA 3K87A 3R5RA 1RFEA 1TY9A 2VPAA 3R5LA 3U5WA 1W3QA 3VY2A 5BNCA 2D37A 3HMZA 3ZOEA 2HTIA 3IN6A 1USCA 2IMLA 1YLNA 2D5MA 2R6VA 1I0RA 3CP3A 3U34A 4N7RC 2R0XA 2Q9KA 3U0IA 2X1JA 3B5MA 3ZODA 1RZ1A 2ED4A 3ZOFA 1G77A 3DMBA 5ESCA 2RDEA 1AXJA 1WLKA 3K86A 2GJGA 2HQ9A 2IG6A 4IRAA 1RZ0A 4HMTA 2HHZA 3NFWA 3KYGA 4QVBA 3BNKA 1W9AA 3PFTA 2D36A 2AQ6A 3ZOGA 3FGEA 3A20A 2ASFA 1WLIA 2I02A 1WGBA 2D38A 3F7EA 3R5PA 3KYFA 1CI0A 3A6RA 5JABA 4HMVA 3AMFA 2I51A 2FURA 1W3OA 1FLMA 3EC6A 3CB0A 2QEAA 4HMSA 1W3RA 1W3PA 2OU5A 3ZOCA 5CHOA 3VY5A 1Y30A 4Y9IA 4HMWA 1USFA 4L82A 4YBNA 1G76A 1JNWA 4XHYA 3BPKA 4YWNA 2IABA 4HMXA 3HY8A 3SWJA 1G79A 1XXOA 3R5YA 2A2JA 1XHNA 3R5ZA 3H96A 4HX6A 4R82A 2RE7A 3RH7A 1T9MA 3TGVA 2OL5A 3AWHA 3BA3A 5CHEC 4Z85A 2PTFA 1WV4A 2E83A 3ZOHA 3A6QA 2HQ7A 3DB0A 3U35A 2FHQA 4HMUA 1NRGA 2ECUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ECR A;  2NR4 A;  3DNH A;  3GAS A;  3VYA A;  4XJ2 A;  1EJE A;  2QCK A;  1YOA A;  4F07 A;  2ARZ A;  2HTD A;  3FKH A;  2X1K A;  3E4V A;  3R5W A;  3K88 A;  1VL7 A;  4ZKY A;  1G78 A;  1I0S A;  2FG9 A;  1DNL A;  3K87 A;  3R5R A;  1RFE A;  1TY9 A;  2VPA A;  3R5L A;  3U5W A;  1W3Q A;  3VY2 A;  5BNC A;  2D37 A;  3HMZ A;  3ZOE A;  2HTI A;  3IN6 A;  1USC A;  2IML A;  1YLN A;  2D5M A;  2R6V A;  1I0R A;  3CP3 A;  3U34 A;  4N7R C;  2R0X A;  2Q9K A;  3U0I A;  2X1J A;  3B5M A;  3ZOD A;  1RZ1 A;  2ED4 A;  3ZOF A;  1G77 A;  3DMB A;  5ESC A;  2RDE A;  1AXJ A;  1WLK A;  3K86 A;  2GJG A;  2HQ9 A;  2IG6 A;  4IRA A;  1RZ0 A;  4HMT A;  2HHZ A;  3NFW A;  3KYG A;  4QVB A;  3BNK A;  1W9A A;  3PFT A;  2D36 A;  2AQ6 A;  3ZOG A;  3FGE A;  3A20 A;  2ASF A;  1WLI A;  2I02 A;  1WGB A;  2D38 A;  3F7E A;  3R5P A;  3KYF A;  1CI0 A;  3A6R A;  5JAB A;  4HMV A;  3AMF A;  2I51 A;  2FUR A;  1W3O A;  1FLM A;  3EC6 A;  3CB0 A;  2QEA A;  4HMS A;  1W3R A;  1W3P A;  2OU5 A;  3ZOC A;  5CHO A;  3VY5 A;  1Y30 A;  4Y9I A;  4HMW A;  1USF A;  4L82 A;  4YBN A;  1G76 A;  1JNW A;  4XHY A;  3BPK A;  4YWN A;  2IAB A;  4HMX A;  3HY8 A;  3SWJ A;  1G79 A;  1XXO A;  3R5Y A;  2A2J A;  1XHN A;  3R5Z A;  3H96 A;  4HX6 A;  4R82 A;  2RE7 A;  3RH7 A;  1T9M A;  3TGV A;  2OL5 A;  3AWH A;  3BA3 A;  5CHE C;  4Z85 A;  2PTF A;  1WV4 A;  2E83 A;  3ZOH A;  3A6Q A;  2HQ7 A;  3DB0 A;  3U35 A;  2FHQ A;  4HMU A;  1NRG A;  2ECU A; 
#chains in the Genus database with same CATH topology
 2ECR A;  2NR4 A;  3DNH A;  3GAS A;  3VYA A;  4XJ2 A;  1EJE A;  2QCK A;  1YOA A;  4F07 A;  2ARZ A;  2HTD A;  3FKH A;  2X1K A;  3E4V A;  3R5W A;  3K88 A;  2K4Q A;  1VL7 A;  4ZKY A;  1G78 A;  1I0S A;  2FG9 A;  1DNL A;  3K87 A;  3R5R A;  1RFE A;  1TY9 A;  2VPA A;  3R5L A;  3U5W A;  1W3Q A;  3VY2 A;  5BNC A;  2D37 A;  3HMZ A;  3ZOE A;  2HTI A;  3IN6 A;  2L1T A;  1USC A;  2IML A;  2GUJ A;  1YLN A;  2D5M A;  2R6V A;  1I0R A;  3CP3 A;  3U34 A;  4N7R C;  2R0X A;  2Q9K A;  3U0I A;  3V4H A;  2X1J A;  3B5M A;  4UHV A;  1RZ1 A;  2ED4 A;  3ZOD A;  3ZOF A;  1G77 A;  3DMB A;  5ESC A;  2RDE A;  1AXJ A;  1WLK A;  3K86 A;  2GJG A;  2HQ9 A;  2IG6 A;  4IRA A;  1RZ0 A;  4HMT A;  2HHZ A;  3NFW A;  3KYG A;  4QVB A;  3BNK A;  1W9A A;  3PFT A;  2D36 A;  2AQ6 A;  3ZOG A;  3FGE A;  3A20 A;  2ASF A;  1WLI A;  2I02 A;  1WGB A;  1Y12 A;  2D38 A;  3F7E A;  3R5P A;  3KYF A;  1CI0 A;  3A6R A;  5JAB A;  4HMV A;  3AMF A;  2I51 A;  4MTK A;  2FUR A;  1W3O A;  1FLM A;  3EC6 A;  4TV4 A;  3CB0 A;  2QEA A;  3HE1 A;  4HMS A;  1W3R A;  1W3P A;  2OU5 A;  3ZOC A;  5CHO A;  3VY5 A;  1Y30 A;  4Y9I A;  4HMW A;  4W64 A;  1USF A;  4L82 A;  4YBN A;  1G76 A;  1JNW A;  4XHY A;  3BPK A;  4YWN A;  2IAB A;  4HMX A;  3HY8 A;  3SWJ A;  1G79 A;  4HKH A;  1XXO A;  3R5Y A;  2A2J A;  1XHN A;  3R5Z A;  3H96 A;  4HX6 A;  4R82 A;  2RE7 A;  3RH7 A;  1T9M A;  3TGV A;  2OL5 A;  3AWH A;  3BA3 A;  3EAA A;  2P5Z X;  5CHE C;  4Z85 A;  2PTF A;  1WV4 A;  2E83 A;  3ZOH A;  3A6Q A;  2HQ7 A;  3DB0 A;  3U35 A;  2FHQ A;  4HMU A;  1NRG A;  2ECU A; 
#chains in the Genus database with same CATH homology
 2ECR A;  2NR4 A;  3DNH A;  3GAS A;  3VYA A;  4XJ2 A;  1EJE A;  2QCK A;  1YOA A;  4F07 A;  2ARZ A;  2HTD A;  3FKH A;  2X1K A;  3E4V A;  3R5W A;  3K88 A;  1VL7 A;  4ZKY A;  1G78 A;  1I0S A;  2FG9 A;  1DNL A;  3K87 A;  3R5R A;  1RFE A;  1TY9 A;  2VPA A;  3R5L A;  3U5W A;  1W3Q A;  3VY2 A;  5BNC A;  2D37 A;  3HMZ A;  3ZOE A;  2HTI A;  3IN6 A;  1USC A;  2IML A;  1YLN A;  2D5M A;  2R6V A;  1I0R A;  3CP3 A;  3U34 A;  4N7R C;  2R0X A;  2Q9K A;  3U0I A;  2X1J A;  3B5M A;  3ZOD A;  1RZ1 A;  2ED4 A;  3ZOF A;  1G77 A;  3DMB A;  5ESC A;  2RDE A;  1AXJ A;  1WLK A;  3K86 A;  2GJG A;  2HQ9 A;  2IG6 A;  4IRA A;  1RZ0 A;  4HMT A;  2HHZ A;  3NFW A;  3KYG A;  4QVB A;  3BNK A;  1W9A A;  3PFT A;  2D36 A;  2AQ6 A;  3ZOG A;  3FGE A;  3A20 A;  2ASF A;  1WLI A;  2I02 A;  1WGB A;  2D38 A;  3F7E A;  3R5P A;  3KYF A;  1CI0 A;  3A6R A;  5JAB A;  4HMV A;  3AMF A;  2I51 A;  2FUR A;  1W3O A;  1FLM A;  3EC6 A;  3CB0 A;  2QEA A;  4HMS A;  1W3R A;  1W3P A;  2OU5 A;  3ZOC A;  5CHO A;  3VY5 A;  1Y30 A;  4Y9I A;  4HMW A;  1USF A;  4L82 A;  4YBN A;  1G76 A;  1JNW A;  4XHY A;  3BPK A;  4YWN A;  2IAB A;  4HMX A;  3HY8 A;  3SWJ A;  1G79 A;  1XXO A;  3R5Y A;  2A2J A;  1XHN A;  3R5Z A;  3H96 A;  4HX6 A;  4R82 A;  2RE7 A;  3RH7 A;  1T9M A;  3TGV A;  2OL5 A;  3AWH A;  3BA3 A;  5CHE C;  4Z85 A;  2PTF A;  1WV4 A;  2E83 A;  3ZOH A;  3A6Q A;  2HQ7 A;  3DB0 A;  3U35 A;  2FHQ A;  4HMU A;  1NRG A;  2ECU A; 
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similar chains in the Genus database (?% sequence similarity)
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