2K4Q | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	156
structure length	156
Chain Sequence	GAMMPVPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 156 atoms

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156 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. pubmed doi rcsb
molecule keywords	Major tail protein V
molecule tags	Viral protein
source organism	Enterobacteria phage lambda
total genus	9
structure length	156
sequence length	156
ec nomenclature
pdb deposition date	2008-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16461	Phage_TTP_12	Lambda phage tail tube protein, TTP

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.60	Mainly Beta	Roll	Pnp Oxidase; Chain A	Pnp Oxidase; Chain A	2k4qA00

2K4QA
chains in the Genus database with same CATH superfamily

1Y12A 2QEAA 3R5PA 4HMTA 5CHOA 4HMVA 2A2JA 1XHNA 2VPAA 2R0XA 3H96A 4XHYA 5JABA 1W3QA 2HQ7A 4UHVA 1G78A 3VYAA 3U0IA 4IRAA 2I02A 1XXOA 1RZ1A 2E83A 1W3PA 3HMZA 3R5RA 4W64A 3ZOHA 1AXJA 3GASA 1DNLA 4HKHA 1CI0A 3EAAA 4TV4A 3BPKA 1W3RA 5BNCA 1NRGA 3EC6A 2K4QA 3AWHA 2ARZA 1G79A 1W3OA 1WLKA 3DMBA 1G77A 4QVBA 3U5WA 3V4HA 3TGVA 2X1KA 3R5YA 3U34A 2R6VA 3ZOGA 3FGEA 5CHEC 3E4VA 3KYGA 3NFWA 4YWNA 3R5LA 1RZ0A 2QCKA 3K86A 4HX6A 3A20A 1EJEA 4F07A 4HMXA 4MTKA 2ED4A 4L82A 3ZODA 5ESCA 2OU5A 3VY2A 2D36A 1I0RA 3HE1A 3R5ZA 3BA3A 2HQ9A 1FLMA 2NR4A 2AQ6A 3DNHA 4R82A 3BNKA 2Q9KA 3A6QA 3AMFA 4Z85A 4HMWA 3ZOCA 4N7RC 3F7EA 2X1JA 3R5WA 2HTIA 1WV4A 2IABA 4ZKYA 3K87A 4XJ2A 3RH7A 3CP3A 2D37A 2IMLA 1Y30A 3FKHA 3ZOEA 2ECRA 3ZOFA 2PTFA 2RDEA 4YBNA 3U35A 1I0SA 1RFEA 1T9MA 3PFTA 2ASFA 3K88A 3CB0A 2GJGA 3HY8A 1WGBA 2FHQA 3KYFA 1W9AA 2FG9A 1USFA 2HHZA 1JNWA 2HTDA 3DB0A 2ECUA 4HMSA 2FURA 3VY5A 2L1TA 1USCA 3SWJA 1VL7A 3IN6A 2OL5A 2D5MA 4Y9IA 1YLNA 2RE7A 2D38A 1WLIA 2IG6A 1YOAA 3A6RA 1TY9A 2I51A 3B5MA 2P5ZX 2GUJA 4HMUA 1G76A
chains in the Genus database with same CATH topology

4UHVA 2P5ZX 2K4QA 2L1TA 2GUJA 4MTKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2K4Q A; 
#chains in the Genus database with same CATH topology
 1Y12 A;  2QEA A;  3R5P A;  4HMT A;  5CHO A;  4HMV A;  2A2J A;  1XHN A;  2VPA A;  2R0X A;  3H96 A;  4XHY A;  5JAB A;  1W3Q A;  2HQ7 A;  4UHV A;  1G78 A;  3VYA A;  3U0I A;  4IRA A;  2I02 A;  1XXO A;  1RZ1 A;  2E83 A;  1W3P A;  3HMZ A;  3R5R A;  4W64 A;  3ZOH A;  1AXJ A;  3GAS A;  1DNL A;  4HKH A;  1CI0 A;  3EAA A;  4TV4 A;  3BPK A;  1W3R A;  5BNC A;  1NRG A;  3EC6 A;  2K4Q A;  3AWH A;  2ARZ A;  1G79 A;  1W3O A;  1WLK A;  3DMB A;  1G77 A;  4QVB A;  3U5W A;  3V4H A;  3TGV A;  2X1K A;  3R5Y A;  3U34 A;  2R6V A;  3ZOG A;  3FGE A;  5CHE C;  3E4V A;  3KYG A;  3NFW A;  4YWN A;  3R5L A;  1RZ0 A;  2QCK A;  3K86 A;  4HX6 A;  3A20 A;  1EJE A;  4F07 A;  4HMX A;  4MTK A;  2ED4 A;  4L82 A;  3ZOD A;  5ESC A;  2OU5 A;  3VY2 A;  2D36 A;  1I0R A;  3HE1 A;  3R5Z A;  3BA3 A;  2HQ9 A;  1FLM A;  2NR4 A;  2AQ6 A;  3DNH A;  4R82 A;  3BNK A;  2Q9K A;  3A6Q A;  3AMF A;  4Z85 A;  4HMW A;  3ZOC A;  4N7R C;  3F7E A;  2X1J A;  3R5W A;  2HTI A;  1WV4 A;  2IAB A;  4ZKY A;  3K87 A;  4XJ2 A;  3RH7 A;  3CP3 A;  2D37 A;  2IML A;  1Y30 A;  3FKH A;  3ZOE A;  2ECR A;  3ZOF A;  2PTF A;  2RDE A;  4YBN A;  3U35 A;  1I0S A;  1RFE A;  1T9M A;  3PFT A;  2ASF A;  3K88 A;  3CB0 A;  2GJG A;  3HY8 A;  1WGB A;  2FHQ A;  3KYF A;  1W9A A;  2FG9 A;  1USF A;  2HHZ A;  1JNW A;  2HTD A;  3DB0 A;  2ECU A;  4HMS A;  2FUR A;  3VY5 A;  2L1T A;  1USC A;  3SWJ A;  1VL7 A;  3IN6 A;  2OL5 A;  2D5M A;  4Y9I A;  1YLN A;  2RE7 A;  2D38 A;  1WLI A;  2IG6 A;  1YOA A;  3A6R A;  1TY9 A;  2I51 A;  3B5M A;  2P5Z X;  2GUJ A;  4HMU A;  1G76 A; 
#chains in the Genus database with same CATH homology
 4UHV A;  2P5Z X;  2K4Q A;  2L1T A;  2GUJ A;  4MTK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K4QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations