2K4Q | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	156
structure length	156
Chain Sequence	GAMMPVPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 156 atoms

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156 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. pubmed doi rcsb
molecule keywords	Major tail protein V
molecule tags	Viral protein
source organism	Enterobacteria phage lambda
total genus	9
structure length	156
sequence length	156
ec nomenclature
pdb deposition date	2008-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16461	Phage_TTP_12	Lambda phage tail tube protein, TTP

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.60	Mainly Beta	Roll	Pnp Oxidase; Chain A	Pnp Oxidase; Chain A	2k4qA00

2K4QA
chains in the Genus database with same CATH superfamily

1I0SA 1RZ1A 2AQ6A 4L82A 5JABA 4N7RC 1JNWA 1W3RA 3A20A 1W9AA 3FKHA 3B5MA 4XJ2A 4Z85A 4R82A 3VYAA 2HTIA 4HMWA 2QEAA 2X1KA 3A6RA 3V4HA 1USCA 2P5ZX 5CHEC 3CB0A 1Y12A 3ZOFA 4F07A 2FURA 1WGBA 2NR4A 2ARZA 4IRAA 3CP3A 3HE1A 1USFA 2FHQA 3K86A 4ZKYA 1T9MA 1W3QA 3AMFA 3R5PA 1I0RA 4HMVA 3GASA 4XHYA 4TV4A 3R5YA 2A2JA 2K4QA 3U5WA 2D36A 3U34A 3KYFA 1XXOA 3ZOCA 4HX6A 2HTDA 2GJGA 3K87A 3R5RA 2OL5A 4HMTA 3ZOHA 3SWJA 3EC6A 1CI0A 2IABA 3U35A 3BPKA 2IG6A 2R6VA 2ED4A 3E4VA 2OU5A 1DNLA 3TGVA 1VL7A 2RE7A 3R5LA 3BA3A 3DMBA 4HMXA 2IMLA 4YBNA 1G79A 1WV4A 2D37A 2I02A 2D38A 3ZOGA 2R0XA 3HMZA 2HQ9A 1XHNA 3EAAA 3DB0A 3NFWA 3RH7A 5ESCA 2PTFA 4HKHA 3BNKA 1G78A 1WLIA 3F7EA 3ZOEA 3KYGA 4W64A 3PFTA 1Y30A 2HQ7A 3AWHA 1WLKA 3U0IA 4YWNA 3VY2A 3K88A 5CHOA 3R5ZA 3H96A 5BNCA 1AXJA 3DNHA 2D5MA 2Q9KA 2QCKA 2I51A 1W3OA 3A6QA 2FG9A 1EJEA 1G76A 2L1TA 1TY9A 3HY8A 2GUJA 4UHVA 2X1JA 1W3PA 1NRGA 1G77A 1RFEA 2E83A 3IN6A 1FLMA 2ECUA 3VY5A 3ZODA 2HHZA 4Y9IA 1YOAA 4MTKA 1YLNA 2ECRA 4HMUA 4HMSA 2VPAA 4QVBA 1RZ0A 2ASFA 2RDEA 3FGEA 3R5WA
chains in the Genus database with same CATH topology

2P5ZX 2L1TA 2GUJA 2K4QA 4UHVA 4MTKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2K4Q A; 
#chains in the Genus database with same CATH topology
 1I0S A;  1RZ1 A;  2AQ6 A;  4L82 A;  5JAB A;  4N7R C;  1JNW A;  1W3R A;  3A20 A;  1W9A A;  3FKH A;  3B5M A;  4XJ2 A;  4Z85 A;  4R82 A;  3VYA A;  2HTI A;  4HMW A;  2QEA A;  2X1K A;  3A6R A;  3V4H A;  1USC A;  2P5Z X;  5CHE C;  3CB0 A;  1Y12 A;  3ZOF A;  4F07 A;  2FUR A;  1WGB A;  2NR4 A;  2ARZ A;  4IRA A;  3CP3 A;  3HE1 A;  1USF A;  2FHQ A;  3K86 A;  4ZKY A;  1T9M A;  1W3Q A;  3AMF A;  3R5P A;  1I0R A;  4HMV A;  3GAS A;  4XHY A;  4TV4 A;  3R5Y A;  2A2J A;  2K4Q A;  3U5W A;  2D36 A;  3U34 A;  3KYF A;  1XXO A;  3ZOC A;  4HX6 A;  2HTD A;  2GJG A;  3K87 A;  3R5R A;  2OL5 A;  4HMT A;  3ZOH A;  3SWJ A;  3EC6 A;  1CI0 A;  2IAB A;  3U35 A;  3BPK A;  2IG6 A;  2R6V A;  2ED4 A;  3E4V A;  2OU5 A;  1DNL A;  3TGV A;  1VL7 A;  2RE7 A;  3R5L A;  3BA3 A;  3DMB A;  4HMX A;  2IML A;  4YBN A;  1G79 A;  1WV4 A;  2D37 A;  2I02 A;  2D38 A;  3ZOG A;  2R0X A;  3HMZ A;  2HQ9 A;  1XHN A;  3EAA A;  3DB0 A;  3NFW A;  3RH7 A;  5ESC A;  2PTF A;  4HKH A;  3BNK A;  1G78 A;  1WLI A;  3F7E A;  3ZOE A;  3KYG A;  4W64 A;  3PFT A;  1Y30 A;  2HQ7 A;  3AWH A;  1WLK A;  3U0I A;  4YWN A;  3VY2 A;  3K88 A;  5CHO A;  3R5Z A;  3H96 A;  5BNC A;  1AXJ A;  3DNH A;  2D5M A;  2Q9K A;  2QCK A;  2I51 A;  1W3O A;  3A6Q A;  2FG9 A;  1EJE A;  1G76 A;  2L1T A;  1TY9 A;  3HY8 A;  2GUJ A;  4UHV A;  2X1J A;  1W3P A;  1NRG A;  1G77 A;  1RFE A;  2E83 A;  3IN6 A;  1FLM A;  2ECU A;  3VY5 A;  3ZOD A;  2HHZ A;  4Y9I A;  1YOA A;  4MTK A;  1YLN A;  2ECR A;  4HMU A;  4HMS A;  2VPA A;  4QVB A;  1RZ0 A;  2ASF A;  2RDE A;  3FGE A;  3R5W A; 
#chains in the Genus database with same CATH homology
 2P5Z X;  2L1T A;  2GUJ A;  2K4Q A;  4UHV A;  4MTK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K4QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations