2K4Q | Genus

Total Genus 9

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	156
structure length	156
Chain Sequence	GAMMPVPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. pubmed doi rcsb
molecule keywords	Major tail protein V
molecule tags	Viral protein
source organism	Enterobacteria phage lambda
total genus	9
structure length	156
sequence length	156
ec nomenclature
pdb deposition date	2008-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16461	Phage_TTP_12	Lambda phage tail tube protein, TTP

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.60	Mainly Beta	Roll	Pnp Oxidase; Chain A	Pnp Oxidase; Chain A	2k4qA00

2K4QA
chains in the Genus database with same CATH superfamily

3E4VA 2D38A 3R5ZA 3VY2A 3ZOCA 4ZKYA 3HY8A 2RDEA 4HX6A 3A20A 3EAAA 4N7RC 2K4QA 5CHOA 3VY5A 2FURA 3ZODA 1USCA 1W3QA 1VL7A 3KYFA 4W64A 1USFA 1XHNA 1XXOA 2ECUA 2OU5A 4XHYA 1W3PA 2E83A 2ED4A 3F7EA 2AQ6A 2HHZA 1I0SA 5BNCA 1RFEA 1CI0A 3GASA 3K86A 2NR4A 3AWHA 3K88A 3DNHA 4HMUA 3R5WA 2X1KA 3A6RA 2PTFA 2HQ7A 1Y30A 2IG6A 2X1JA 4QVBA 3K87A 2L1TA 3U5WA 3ZOHA 3ZOFA 3BNKA 3U35A 3PFTA 3DMBA 1FLMA 1NRGA 3R5PA 2RE7A 3U0IA 4XJ2A 2QCKA 1G79A 4F07A 3IN6A 4HMVA 1EJEA 2D5MA 3NFWA 1TY9A 3KYGA 1W9AA 2GUJA 4YWNA 3EC6A 2ARZA 3DB0A 2GJGA 3V4HA 1RZ1A 2D36A 4TV4A 4HMTA 3FKHA 3TGVA 3ZOEA 4HMXA 3BPKA 2OL5A 4IRAA 3HE1A 1WGBA 1WLIA 1WV4A 3CB0A 1G76A 3R5LA 2R6VA 2ASFA 4HMWA 4Y9IA 5ESCA 2IMLA 2FG9A 1T9MA 3VYAA 3A6QA 3B5MA 3AMFA 3ZOGA 1DNLA 2A2JA 4Z85A 1YOAA 3HMZA 3H96A 2ECRA 2QEAA 1AXJA 1RZ0A 3BA3A 1YLNA 4MTKA 4HMSA 3R5YA 2D37A 2I02A 2FHQA 2IABA 4YBNA 3RH7A 2HTDA 1W3OA 1W3RA 4HKHA 3R5RA 4L82A 1G77A 4R82A 2P5ZX 3U34A 2R0XA 3SWJA 1Y12A 2HQ9A 2VPAA 2HTIA 1JNWA 2Q9KA 5JABA 5CHEC 2I51A 3CP3A 1I0RA 1G78A 4UHVA 1WLKA 3FGEA
chains in the Genus database with same CATH topology

2K4QA 2GUJA 4UHVA 2P5ZX 4MTKA 2L1TA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2K4Q A; 
#chains in the Genus database with same CATH topology
 3E4V A;  2D38 A;  3R5Z A;  3VY2 A;  3ZOC A;  4ZKY A;  3HY8 A;  2RDE A;  4HX6 A;  3A20 A;  3EAA A;  4N7R C;  2K4Q A;  5CHO A;  3VY5 A;  2FUR A;  3ZOD A;  1USC A;  1W3Q A;  1VL7 A;  3KYF A;  4W64 A;  1USF A;  1XHN A;  1XXO A;  2ECU A;  2OU5 A;  4XHY A;  1W3P A;  2E83 A;  2ED4 A;  3F7E A;  2AQ6 A;  2HHZ A;  1I0S A;  5BNC A;  1RFE A;  1CI0 A;  3GAS A;  3K86 A;  2NR4 A;  3AWH A;  3K88 A;  3DNH A;  4HMU A;  3R5W A;  2X1K A;  3A6R A;  2PTF A;  2HQ7 A;  1Y30 A;  2IG6 A;  2X1J A;  4QVB A;  3K87 A;  2L1T A;  3U5W A;  3ZOH A;  3ZOF A;  3BNK A;  3U35 A;  3PFT A;  3DMB A;  1FLM A;  1NRG A;  3R5P A;  2RE7 A;  3U0I A;  4XJ2 A;  2QCK A;  1G79 A;  4F07 A;  3IN6 A;  4HMV A;  1EJE A;  2D5M A;  3NFW A;  1TY9 A;  3KYG A;  1W9A A;  2GUJ A;  4YWN A;  3EC6 A;  2ARZ A;  3DB0 A;  2GJG A;  3V4H A;  1RZ1 A;  2D36 A;  4TV4 A;  4HMT A;  3FKH A;  3TGV A;  3ZOE A;  4HMX A;  3BPK A;  2OL5 A;  4IRA A;  3HE1 A;  1WGB A;  1WLI A;  1WV4 A;  3CB0 A;  1G76 A;  3R5L A;  2R6V A;  2ASF A;  4HMW A;  4Y9I A;  5ESC A;  2IML A;  2FG9 A;  1T9M A;  3VYA A;  3A6Q A;  3B5M A;  3AMF A;  3ZOG A;  1DNL A;  2A2J A;  4Z85 A;  1YOA A;  3HMZ A;  3H96 A;  2ECR A;  2QEA A;  1AXJ A;  1RZ0 A;  3BA3 A;  1YLN A;  4MTK A;  4HMS A;  3R5Y A;  2D37 A;  2I02 A;  2FHQ A;  2IAB A;  4YBN A;  3RH7 A;  2HTD A;  1W3O A;  1W3R A;  4HKH A;  3R5R A;  4L82 A;  1G77 A;  4R82 A;  2P5Z X;  3U34 A;  2R0X A;  3SWJ A;  1Y12 A;  2HQ9 A;  2VPA A;  2HTI A;  1JNW A;  2Q9K A;  5JAB A;  5CHE C;  2I51 A;  3CP3 A;  1I0R A;  1G78 A;  4UHV A;  1WLK A;  3FGE A; 
#chains in the Genus database with same CATH homology
 2K4Q A;  2GUJ A;  4UHV A;  2P5Z X;  4MTK A;  2L1T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K4QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations