2K4Q | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	156
structure length	156
Chain Sequence	GAMMPVPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 156 atoms

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156 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. pubmed doi rcsb
molecule keywords	Major tail protein V
molecule tags	Viral protein
source organism	Enterobacteria phage lambda
total genus	9
structure length	156
sequence length	156
ec nomenclature
pdb deposition date	2008-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16461	Phage_TTP_12	Lambda phage tail tube protein, TTP

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.60	Mainly Beta	Roll	Pnp Oxidase; Chain A	Pnp Oxidase; Chain A	2k4qA00

2K4QA
chains in the Genus database with same CATH superfamily

3ZOFA 2HQ7A 3EAAA 3ZOHA 2R6VA 1YOAA 3BPKA 3FGEA 2AQ6A 2D38A 2FHQA 3RH7A 4F07A 2K4QA 1AXJA 3PFTA 1Y30A 2HTIA 4HMTA 3R5WA 3FKHA 2IG6A 3ZOEA 2ECRA 2D5MA 1I0SA 1USCA 1W3QA 3DMBA 2IMLA 4HKHA 3A6QA 3U34A 4HMSA 3ZODA 4ZKYA 1CI0A 3AMFA 3R5LA 1Y12A 4N7RC 2FG9A 2PTFA 3EC6A 2ARZA 1T9MA 3R5YA 2I51A 1I0RA 3KYFA 1WV4A 2Q9KA 2D36A 2L1TA 5ESCA 2ASFA 2ED4A 2OL5A 2HHZA 3K87A 3ZOCA 4XJ2A 4Y9IA 4Z85A 3E4VA 3DB0A 1VL7A 5JABA 1G77A 2P5ZX 4L82A 2E83A 2IABA 1W3PA 1WGBA 1RZ0A 1TY9A 1USFA 2D37A 1JNWA 3HE1A 1WLKA 3GASA 4HMWA 2GJGA 2ECUA 3A20A 4QVBA 4HMXA 1FLMA 3KYGA 1WLIA 4YBNA 2RDEA 1G79A 3AWHA 2OU5A 3K86A 3BNKA 1NRGA 3BA3A 1W9AA 3R5ZA 4W64A 3SWJA 2HTDA 3DNHA 3R5PA 3VY2A 1XXOA 3K88A 1DNLA 1W3OA 3IN6A 5CHOA 3HMZA 4R82A 2R0XA 2I02A 1G76A 3TGVA 3B5MA 2RE7A 1W3RA 2NR4A 2A2JA 4HMVA 4IRAA 3F7EA 2HQ9A 3CB0A 3NFWA 4UHVA 2X1KA 2FURA 2GUJA 2VPAA 2X1JA 1RZ1A 1YLNA 3HY8A 5CHEC 4XHYA 1RFEA 1EJEA 3R5RA 3H96A 4TV4A 3U5WA 5BNCA 3U0IA 4HMUA 3VYAA 1G78A 2QEAA 4MTKA 3VY5A 3ZOGA 2QCKA 3CP3A 4HX6A 3V4HA 3U35A 3A6RA 1XHNA 4YWNA
chains in the Genus database with same CATH topology

2P5ZX 4UHVA 2K4QA 2GUJA 4MTKA 2L1TA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2K4Q A; 
#chains in the Genus database with same CATH topology
 3ZOF A;  2HQ7 A;  3EAA A;  3ZOH A;  2R6V A;  1YOA A;  3BPK A;  3FGE A;  2AQ6 A;  2D38 A;  2FHQ A;  3RH7 A;  4F07 A;  2K4Q A;  1AXJ A;  3PFT A;  1Y30 A;  2HTI A;  4HMT A;  3R5W A;  3FKH A;  2IG6 A;  3ZOE A;  2ECR A;  2D5M A;  1I0S A;  1USC A;  1W3Q A;  3DMB A;  2IML A;  4HKH A;  3A6Q A;  3U34 A;  4HMS A;  3ZOD A;  4ZKY A;  1CI0 A;  3AMF A;  3R5L A;  1Y12 A;  4N7R C;  2FG9 A;  2PTF A;  3EC6 A;  2ARZ A;  1T9M A;  3R5Y A;  2I51 A;  1I0R A;  3KYF A;  1WV4 A;  2Q9K A;  2D36 A;  2L1T A;  5ESC A;  2ASF A;  2ED4 A;  2OL5 A;  2HHZ A;  3K87 A;  3ZOC A;  4XJ2 A;  4Y9I A;  4Z85 A;  3E4V A;  3DB0 A;  1VL7 A;  5JAB A;  1G77 A;  2P5Z X;  4L82 A;  2E83 A;  2IAB A;  1W3P A;  1WGB A;  1RZ0 A;  1TY9 A;  1USF A;  2D37 A;  1JNW A;  3HE1 A;  1WLK A;  3GAS A;  4HMW A;  2GJG A;  2ECU A;  3A20 A;  4QVB A;  4HMX A;  1FLM A;  3KYG A;  1WLI A;  4YBN A;  2RDE A;  1G79 A;  3AWH A;  2OU5 A;  3K86 A;  3BNK A;  1NRG A;  3BA3 A;  1W9A A;  3R5Z A;  4W64 A;  3SWJ A;  2HTD A;  3DNH A;  3R5P A;  3VY2 A;  1XXO A;  3K88 A;  1DNL A;  1W3O A;  3IN6 A;  5CHO A;  3HMZ A;  4R82 A;  2R0X A;  2I02 A;  1G76 A;  3TGV A;  3B5M A;  2RE7 A;  1W3R A;  2NR4 A;  2A2J A;  4HMV A;  4IRA A;  3F7E A;  2HQ9 A;  3CB0 A;  3NFW A;  4UHV A;  2X1K A;  2FUR A;  2GUJ A;  2VPA A;  2X1J A;  1RZ1 A;  1YLN A;  3HY8 A;  5CHE C;  4XHY A;  1RFE A;  1EJE A;  3R5R A;  3H96 A;  4TV4 A;  3U5W A;  5BNC A;  3U0I A;  4HMU A;  3VYA A;  1G78 A;  2QEA A;  4MTK A;  3VY5 A;  3ZOG A;  2QCK A;  3CP3 A;  4HX6 A;  3V4H A;  3U35 A;  3A6R A;  1XHN A;  4YWN A; 
#chains in the Genus database with same CATH homology
 2P5Z X;  4UHV A;  2K4Q A;  2GUJ A;  4MTK A;  2L1T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K4QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations