2K4Q | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	156
structure length	156
Chain Sequence	GAMMPVPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfd4b27c468dab01de212d2/pdb.gz): 2504 ms

reading 156 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

156 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 29 ms

Adding embedded #jmolscript: select ({0:155});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. pubmed doi rcsb
molecule keywords	Major tail protein V
molecule tags	Viral protein
source organism	Enterobacteria phage lambda
total genus	9
structure length	156
sequence length	156
ec nomenclature
pdb deposition date	2008-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16461	Phage_TTP_12	Lambda phage tail tube protein, TTP

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.60	Mainly Beta	Roll	Pnp Oxidase; Chain A	Pnp Oxidase; Chain A	2k4qA00

2K4QA
chains in the Genus database with same CATH superfamily

3DNHA 3EAAA 3IN6A 4MTKA 2D36A 3HMZA 3A6RA 3R5LA 3SWJA 2FURA 1W9AA 1G78A 1I0SA 1RZ0A 2GJGA 2X1KA 3EC6A 1W3PA 1WV4A 3HY8A 1I0RA 1VL7A 1YLNA 1W3QA 3KYGA 2K4QA 3DB0A 3R5WA 1G79A 2AQ6A 2Q9KA 4HKHA 4HMUA 4W64A 4N7RC 3ZOEA 2FG9A 3AMFA 3VYAA 3VY2A 5CHEC 1NRGA 4Z85A 3R5RA 1AXJA 3V4HA 1FLMA 3GASA 3K87A 2ECRA 2R6VA 3ZOCA 4XHYA 3K86A 2NR4A 1TY9A 1WLIA 3BNKA 3H96A 3R5PA 4HMSA 4R82A 3KYFA 2HQ7A 2X1JA 3BPKA 3U35A 3R5YA 1USFA 1XXOA 2RDEA 4XJ2A 4HMVA 4HMXA 2VPAA 1CI0A 2FHQA 2P5ZX 2HTIA 2OU5A 3F7EA 1USCA 1JNWA 2R0XA 2ARZA 4UHVA 4YBNA 3HE1A 5ESCA 2ECUA 1RFEA 3U34A 5JABA 1W3OA 2HHZA 2D38A 3ZODA 2I02A 2QEAA 3NFWA 3VY5A 3PFTA 3R5ZA 2IABA 1DNLA 3AWHA 3CB0A 3E4VA 1G77A 4TV4A 5BNCA 4F07A 2IMLA 2GUJA 2L1TA 4ZKYA 2OL5A 3ZOHA 2A2JA 3A6QA 4Y9IA 3U5WA 3ZOFA 2PTFA 1RZ1A 2IG6A 3RH7A 4HMTA 2D37A 1Y12A 1YOAA 3FKHA 2QCKA 3B5MA 2D5MA 2E83A 4QVBA 1G76A 3CP3A 4L82A 3ZOGA 3BA3A 1T9MA 4YWNA 1WLKA 4HMWA 1WGBA 2ASFA 2I51A 3TGVA 2RE7A 3DMBA 3K88A 4HX6A 1Y30A 3A20A 2ED4A 3U0IA 2HQ9A 5CHOA 2HTDA 4IRAA 3FGEA 1EJEA 1XHNA 1W3RA
chains in the Genus database with same CATH topology

2K4QA 2P5ZX 4UHVA 2GUJA 2L1TA 4MTKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2K4Q A; 
#chains in the Genus database with same CATH topology
 3DNH A;  3EAA A;  3IN6 A;  4MTK A;  2D36 A;  3HMZ A;  3A6R A;  3R5L A;  3SWJ A;  2FUR A;  1W9A A;  1G78 A;  1I0S A;  1RZ0 A;  2GJG A;  2X1K A;  3EC6 A;  1W3P A;  1WV4 A;  3HY8 A;  1I0R A;  1VL7 A;  1YLN A;  1W3Q A;  3KYG A;  2K4Q A;  3DB0 A;  3R5W A;  1G79 A;  2AQ6 A;  2Q9K A;  4HKH A;  4HMU A;  4W64 A;  4N7R C;  3ZOE A;  2FG9 A;  3AMF A;  3VYA A;  3VY2 A;  5CHE C;  1NRG A;  4Z85 A;  3R5R A;  1AXJ A;  3V4H A;  1FLM A;  3GAS A;  3K87 A;  2ECR A;  2R6V A;  3ZOC A;  4XHY A;  3K86 A;  2NR4 A;  1TY9 A;  1WLI A;  3BNK A;  3H96 A;  3R5P A;  4HMS A;  4R82 A;  3KYF A;  2HQ7 A;  2X1J A;  3BPK A;  3U35 A;  3R5Y A;  1USF A;  1XXO A;  2RDE A;  4XJ2 A;  4HMV A;  4HMX A;  2VPA A;  1CI0 A;  2FHQ A;  2P5Z X;  2HTI A;  2OU5 A;  3F7E A;  1USC A;  1JNW A;  2R0X A;  2ARZ A;  4UHV A;  4YBN A;  3HE1 A;  5ESC A;  2ECU A;  1RFE A;  3U34 A;  5JAB A;  1W3O A;  2HHZ A;  2D38 A;  3ZOD A;  2I02 A;  2QEA A;  3NFW A;  3VY5 A;  3PFT A;  3R5Z A;  2IAB A;  1DNL A;  3AWH A;  3CB0 A;  3E4V A;  1G77 A;  4TV4 A;  5BNC A;  4F07 A;  2IML A;  2GUJ A;  2L1T A;  4ZKY A;  2OL5 A;  3ZOH A;  2A2J A;  3A6Q A;  4Y9I A;  3U5W A;  3ZOF A;  2PTF A;  1RZ1 A;  2IG6 A;  3RH7 A;  4HMT A;  2D37 A;  1Y12 A;  1YOA A;  3FKH A;  2QCK A;  3B5M A;  2D5M A;  2E83 A;  4QVB A;  1G76 A;  3CP3 A;  4L82 A;  3ZOG A;  3BA3 A;  1T9M A;  4YWN A;  1WLK A;  4HMW A;  1WGB A;  2ASF A;  2I51 A;  3TGV A;  2RE7 A;  3DMB A;  3K88 A;  4HX6 A;  1Y30 A;  3A20 A;  2ED4 A;  3U0I A;  2HQ9 A;  5CHO A;  2HTD A;  4IRA A;  3FGE A;  1EJE A;  1XHN A;  1W3R A; 
#chains in the Genus database with same CATH homology
 2K4Q A;  2P5Z X;  4UHV A;  2GUJ A;  2L1T A;  4MTK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K4QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations