2OL5A

Crystal structure of a protease synthase and sporulation negative regulatory protein pai 2 from bacillus stearothermophilus
Total Genus 36
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
189
structure length
183
Chain Sequence
DPDVAYQVIEENSFATLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLMLSGMNKGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-21)TI6 (111-114)TI3 (60-63)TVIII1 (57-60)EMPTYS1 (24-31)TI1 (45-48)S4 (50-56)S2 (34-41)TI'1 (31-34)S3 (43-44)TI7 (128-131)TI2 (56-59)TIV2 (62-65)TII1 (65-68)S5 (68-81)S7 (150-163)TI5 (83-86)S6 (94-108)3H1 (115-118)TIV5 (118-121)3H2 (121-125)3H3 (145-148)AH2 (172-184)TIV3 (88-91)TI4 (82-85)TI8 (167-170)Updating...
connected with : NaN
molecule tags Transcription regulator
source organism Geobacillus stearothermophilus
publication title Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.
pubmed doi rcsb
molecule keywords PAI 2 protein
total genus 36
structure length 183
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04299 FMN_bind_2 Putative FMN-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2ol5A00
4HMSA 2D36A 1W3QA 3NFWA 1I0RA 3ZOFA 3CP3A 3R5ZA 1W3OA 2HTDA 3R5YA 3DMBA 2X1JA 1Y30A 3KYFA 3VYAA 3EC6A 2RE7A 3E4VA 3FGEA 1NRGA 2ASFA 2IMLA 3SWJA 2E83A 3RH7A 3ZOGA 3IN6A 2HQ9A 1VL7A 2D37A 2I51A 2D5MA 3A20A 3R5RA 2IABA 3BPKA 2ARZA 1WV4A 2QCKA 3R5WA 4XJ2A 1XXOA 1USCA 4YWNA 3ZOEA 2Q9KA 2ECUA 3K88A 3R5PA 3A6RA 1G78A 1WGBA 2OL5A 4IRAA 1W3PA 5JABA 2FG9A 3HY8A 2PTFA 2ED4A 1WLKA 1CI0A 4HMTA 1W9AA 3B5MA 3FKHA 1RZ1A 2I02A 3HMZA 5CHEC 1XHNA 2A2JA 2GJGA 3PFTA 1G76A 3AMFA 3BA3A 4ZKYA 1G79A 3DNHA 5ESCA 3KYGA 2NR4A 1FLMA 1AXJA 3GASA 1JNWA 2QEAA 1RFEA 4HMWA 4HMUA 1TY9A 3VY2A 2IG6A 3CB0A 1T9MA 4QVBA 4L82A 1G77A 2ECRA 4F07A 4Z85A 3U34A 4N7RC 3K86A 3K87A 4HMVA 4HX6A 5CHOA 4Y9IA 3VY5A 2R6VA 2FURA 3AWHA 4XHYA 2VPAA 3U5WA 1W3RA 2RDEA 3U0IA 3R5LA 1YLNA 1USFA 2AQ6A 1WLIA 2D38A 2X1KA 3DB0A 3ZOCA 3H96A 1I0SA 3F7EA 1DNLA 4HMXA 4YBNA 4R82A 2HTIA 2OU5A 2HQ7A 2R0XA 3BNKA 1RZ0A 3ZODA 2HHZA 3ZOHA 5BNCA 2FHQA 3A6QA 3U35A 3TGVA 1YOAA 1EJEA
chains in the Genus database with same CATH superfamily
2P5ZX 4HMSA 2D36A 1W3QA 3NFWA 1I0RA 3ZOFA 3CP3A 3R5ZA 1W3OA 2HTDA 3R5YA 3DMBA 2X1JA 1Y30A 3KYFA 3VYAA 3EC6A 2RE7A 3E4VA 3FGEA 1NRGA 2ASFA 2IMLA 3SWJA 2E83A 3RH7A 3ZOGA 3IN6A 2HQ9A 1VL7A 2D37A 2I51A 2D5MA 3A20A 3R5RA 2IABA 3BPKA 2ARZA 1WV4A 2QCKA 3R5WA 4XJ2A 1XXOA 1USCA 4YWNA 3ZOEA 2Q9KA 2ECUA 3K88A 3R5PA 3A6RA 1G78A 1WGBA 2OL5A 4IRAA 1W3PA 2K4QA 5JABA 2FG9A 3HY8A 2PTFA 2ED4A 1WLKA 1CI0A 4HMTA 1W9AA 3B5MA 4TV4A 3FKHA 1RZ1A 2GUJA 2I02A 3HMZA 5CHEC 4UHVA 1XHNA 2A2JA 2GJGA 3PFTA 1G76A 3AMFA 3BA3A 3EAAA 4ZKYA 1G79A 3DNHA 5ESCA 3KYGA 2NR4A 1FLMA 1AXJA 3GASA 1JNWA 2QEAA 1RFEA 4HMWA 4HMUA 1TY9A 3VY2A 2IG6A 3CB0A 1T9MA 4QVBA 1Y12A 4L82A 4W64A 1G77A 2ECRA 4F07A 4Z85A 4HKHA 3U34A 4N7RC 3K86A 3K87A 4HMVA 4HX6A 5CHOA 4Y9IA 3VY5A 2R6VA 2FURA 3AWHA 4XHYA 2VPAA 3U5WA 2L1TA 1W3RA 2RDEA 3U0IA 3R5LA 1YLNA 1USFA 2AQ6A 1WLIA 4MTKA 2D38A 2X1KA 3DB0A 3ZOCA 3H96A 1I0SA 3F7EA 1DNLA 4HMXA 4YBNA 4R82A 2HTIA 2OU5A 2HQ7A 2R0XA 3BNKA 1RZ0A 3V4HA 3ZODA 2HHZA 3ZOHA 5BNCA 2FHQA 3A6QA 3U35A 3HE1A 3TGVA 1YOAA 1EJEA
chains in the Genus database with same CATH topology
4HMSA 2D36A 1W3QA 3NFWA 1I0RA 3ZOFA 3CP3A 3R5ZA 1W3OA 2HTDA 3R5YA 3DMBA 2X1JA 1Y30A 3KYFA 3VYAA 3EC6A 2RE7A 3E4VA 3FGEA 1NRGA 2ASFA 2IMLA 3SWJA 2E83A 3RH7A 3ZOGA 3IN6A 2HQ9A 1VL7A 2D37A 2I51A 2D5MA 3A20A 3R5RA 2IABA 3BPKA 2ARZA 1WV4A 2QCKA 3R5WA 4XJ2A 1XXOA 1USCA 4YWNA 3ZOEA 2Q9KA 2ECUA 3K88A 3R5PA 3A6RA 1G78A 1WGBA 2OL5A 4IRAA 1W3PA 5JABA 2FG9A 3HY8A 2PTFA 2ED4A 1WLKA 1CI0A 4HMTA 1W9AA 3B5MA 3FKHA 1RZ1A 2I02A 3HMZA 5CHEC 1XHNA 2A2JA 2GJGA 3PFTA 1G76A 3AMFA 3BA3A 4ZKYA 1G79A 3DNHA 5ESCA 3KYGA 2NR4A 1FLMA 1AXJA 3GASA 1JNWA 2QEAA 1RFEA 4HMWA 4HMUA 1TY9A 3VY2A 2IG6A 3CB0A 1T9MA 4QVBA 4L82A 1G77A 2ECRA 4F07A 4Z85A 3U34A 4N7RC 3K86A 3K87A 4HMVA 4HX6A 5CHOA 4Y9IA 3VY5A 2R6VA 2FURA 3AWHA 4XHYA 2VPAA 3U5WA 1W3RA 2RDEA 3U0IA 3R5LA 1YLNA 1USFA 2AQ6A 1WLIA 2D38A 2X1KA 3DB0A 3ZOCA 3H96A 1I0SA 3F7EA 1DNLA 4HMXA 4YBNA 4R82A 2HTIA 2OU5A 2HQ7A 2R0XA 3BNKA 1RZ0A 3ZODA 2HHZA 3ZOHA 5BNCA 2FHQA 3A6QA 3U35A 3TGVA 1YOAA 1EJEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HMS A;  2D36 A;  1W3Q A;  3NFW A;  1I0R A;  3ZOF A;  3CP3 A;  3R5Z A;  1W3O A;  2HTD A;  3R5Y A;  3DMB A;  2X1J A;  1Y30 A;  3KYF A;  3VYA A;  3EC6 A;  2RE7 A;  3E4V A;  3FGE A;  1NRG A;  2ASF A;  2IML A;  3SWJ A;  2E83 A;  3RH7 A;  3ZOG A;  3IN6 A;  2HQ9 A;  1VL7 A;  2D37 A;  2I51 A;  2D5M A;  3A20 A;  3R5R A;  2IAB A;  3BPK A;  2ARZ A;  1WV4 A;  2QCK A;  3R5W A;  4XJ2 A;  1XXO A;  1USC A;  4YWN A;  3ZOE A;  2Q9K A;  2ECU A;  3K88 A;  3R5P A;  3A6R A;  1G78 A;  1WGB A;  2OL5 A;  4IRA A;  1W3P A;  5JAB A;  2FG9 A;  3HY8 A;  2PTF A;  2ED4 A;  1WLK A;  1CI0 A;  4HMT A;  1W9A A;  3B5M A;  3FKH A;  1RZ1 A;  2I02 A;  3HMZ A;  5CHE C;  1XHN A;  2A2J A;  2GJG A;  3PFT A;  1G76 A;  3AMF A;  3BA3 A;  4ZKY A;  1G79 A;  3DNH A;  5ESC A;  3KYG A;  2NR4 A;  1FLM A;  1AXJ A;  3GAS A;  1JNW A;  2QEA A;  1RFE A;  4HMW A;  4HMU A;  1TY9 A;  3VY2 A;  2IG6 A;  3CB0 A;  1T9M A;  4QVB A;  4L82 A;  1G77 A;  2ECR A;  4F07 A;  4Z85 A;  3U34 A;  4N7R C;  3K86 A;  3K87 A;  4HMV A;  4HX6 A;  5CHO A;  4Y9I A;  3VY5 A;  2R6V A;  2FUR A;  3AWH A;  4XHY A;  2VPA A;  3U5W A;  1W3R A;  2RDE A;  3U0I A;  3R5L A;  1YLN A;  1USF A;  2AQ6 A;  1WLI A;  2D38 A;  2X1K A;  3DB0 A;  3ZOC A;  3H96 A;  1I0S A;  3F7E A;  1DNL A;  4HMX A;  4YBN A;  4R82 A;  2HTI A;  2OU5 A;  2HQ7 A;  2R0X A;  3BNK A;  1RZ0 A;  3ZOD A;  2HHZ A;  3ZOH A;  5BNC A;  2FHQ A;  3A6Q A;  3U35 A;  3TGV A;  1YOA A;  1EJE A; 
#chains in the Genus database with same CATH topology
 2P5Z X;  4HMS A;  2D36 A;  1W3Q A;  3NFW A;  1I0R A;  3ZOF A;  3CP3 A;  3R5Z A;  1W3O A;  2HTD A;  3R5Y A;  3DMB A;  2X1J A;  1Y30 A;  3KYF A;  3VYA A;  3EC6 A;  2RE7 A;  3E4V A;  3FGE A;  1NRG A;  2ASF A;  2IML A;  3SWJ A;  2E83 A;  3RH7 A;  3ZOG A;  3IN6 A;  2HQ9 A;  1VL7 A;  2D37 A;  2I51 A;  2D5M A;  3A20 A;  3R5R A;  2IAB A;  3BPK A;  2ARZ A;  1WV4 A;  2QCK A;  3R5W A;  4XJ2 A;  1XXO A;  1USC A;  4YWN A;  3ZOE A;  2Q9K A;  2ECU A;  3K88 A;  3R5P A;  3A6R A;  1G78 A;  1WGB A;  2OL5 A;  4IRA A;  1W3P A;  2K4Q A;  5JAB A;  2FG9 A;  3HY8 A;  2PTF A;  2ED4 A;  1WLK A;  1CI0 A;  4HMT A;  1W9A A;  3B5M A;  4TV4 A;  3FKH A;  1RZ1 A;  2GUJ A;  2I02 A;  3HMZ A;  5CHE C;  4UHV A;  1XHN A;  2A2J A;  2GJG A;  3PFT A;  1G76 A;  3AMF A;  3BA3 A;  3EAA A;  4ZKY A;  1G79 A;  3DNH A;  5ESC A;  3KYG A;  2NR4 A;  1FLM A;  1AXJ A;  3GAS A;  1JNW A;  2QEA A;  1RFE A;  4HMW A;  4HMU A;  1TY9 A;  3VY2 A;  2IG6 A;  3CB0 A;  1T9M A;  4QVB A;  1Y12 A;  4L82 A;  4W64 A;  1G77 A;  2ECR A;  4F07 A;  4Z85 A;  4HKH A;  3U34 A;  4N7R C;  3K86 A;  3K87 A;  4HMV A;  4HX6 A;  5CHO A;  4Y9I A;  3VY5 A;  2R6V A;  2FUR A;  3AWH A;  4XHY A;  2VPA A;  3U5W A;  2L1T A;  1W3R A;  2RDE A;  3U0I A;  3R5L A;  1YLN A;  1USF A;  2AQ6 A;  1WLI A;  4MTK A;  2D38 A;  2X1K A;  3DB0 A;  3ZOC A;  3H96 A;  1I0S A;  3F7E A;  1DNL A;  4HMX A;  4YBN A;  4R82 A;  2HTI A;  2OU5 A;  2HQ7 A;  2R0X A;  3BNK A;  1RZ0 A;  3V4H A;  3ZOD A;  2HHZ A;  3ZOH A;  5BNC A;  2FHQ A;  3A6Q A;  3U35 A;  3HE1 A;  3TGV A;  1YOA A;  1EJE A; 
#chains in the Genus database with same CATH homology
 4HMS A;  2D36 A;  1W3Q A;  3NFW A;  1I0R A;  3ZOF A;  3CP3 A;  3R5Z A;  1W3O A;  2HTD A;  3R5Y A;  3DMB A;  2X1J A;  1Y30 A;  3KYF A;  3VYA A;  3EC6 A;  2RE7 A;  3E4V A;  3FGE A;  1NRG A;  2ASF A;  2IML A;  3SWJ A;  2E83 A;  3RH7 A;  3ZOG A;  3IN6 A;  2HQ9 A;  1VL7 A;  2D37 A;  2I51 A;  2D5M A;  3A20 A;  3R5R A;  2IAB A;  3BPK A;  2ARZ A;  1WV4 A;  2QCK A;  3R5W A;  4XJ2 A;  1XXO A;  1USC A;  4YWN A;  3ZOE A;  2Q9K A;  2ECU A;  3K88 A;  3R5P A;  3A6R A;  1G78 A;  1WGB A;  2OL5 A;  4IRA A;  1W3P A;  5JAB A;  2FG9 A;  3HY8 A;  2PTF A;  2ED4 A;  1WLK A;  1CI0 A;  4HMT A;  1W9A A;  3B5M A;  3FKH A;  1RZ1 A;  2I02 A;  3HMZ A;  5CHE C;  1XHN A;  2A2J A;  2GJG A;  3PFT A;  1G76 A;  3AMF A;  3BA3 A;  4ZKY A;  1G79 A;  3DNH A;  5ESC A;  3KYG A;  2NR4 A;  1FLM A;  1AXJ A;  3GAS A;  1JNW A;  2QEA A;  1RFE A;  4HMW A;  4HMU A;  1TY9 A;  3VY2 A;  2IG6 A;  3CB0 A;  1T9M A;  4QVB A;  4L82 A;  1G77 A;  2ECR A;  4F07 A;  4Z85 A;  3U34 A;  4N7R C;  3K86 A;  3K87 A;  4HMV A;  4HX6 A;  5CHO A;  4Y9I A;  3VY5 A;  2R6V A;  2FUR A;  3AWH A;  4XHY A;  2VPA A;  3U5W A;  1W3R A;  2RDE A;  3U0I A;  3R5L A;  1YLN A;  1USF A;  2AQ6 A;  1WLI A;  2D38 A;  2X1K A;  3DB0 A;  3ZOC A;  3H96 A;  1I0S A;  3F7E A;  1DNL A;  4HMX A;  4YBN A;  4R82 A;  2HTI A;  2OU5 A;  2HQ7 A;  2R0X A;  3BNK A;  1RZ0 A;  3ZOD A;  2HHZ A;  3ZOH A;  5BNC A;  2FHQ A;  3A6Q A;  3U35 A;  3TGV A;  1YOA A;  1EJE A; 
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similar chains in the Genus database (?% sequence similarity)
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