2OL5A

Crystal structure of a protease synthase and sporulation negative regulatory protein pai 2 from bacillus stearothermophilus
Total Genus 36
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
189
structure length
183
Chain Sequence
DPDVAYQVIEENSFATLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLMLSGMNKGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-21)TI6 (111-114)TI3 (60-63)TVIII1 (57-60)EMPTYS1 (24-31)TI1 (45-48)S4 (50-56)S2 (34-41)TI'1 (31-34)S3 (43-44)TI7 (128-131)TI2 (56-59)TIV2 (62-65)TII1 (65-68)S5 (68-81)S7 (150-163)TI5 (83-86)S6 (94-108)3H1 (115-118)TIV5 (118-121)3H2 (121-125)3H3 (145-148)AH2 (172-184)TIV3 (88-91)TI4 (82-85)TI8 (167-170)Updating...
connected with : NaN
molecule tags Transcription regulator
source organism Geobacillus stearothermophilus
publication title Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.
pubmed doi rcsb
molecule keywords PAI 2 protein
total genus 36
structure length 183
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04299 FMN_bind_2 Putative FMN-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2ol5A00
2FURA 2FG9A 3A20A 3ZOEA 1W3QA 3ZOFA 2R0XA 3KYGA 1TY9A 4HMUA 4IRAA 5ESCA 2D37A 3R5RA 1I0RA 3KYFA 2X1JA 3B5MA 2ASFA 3FKHA 3R5ZA 2ECRA 2QEAA 2ED4A 3PFTA 2FHQA 1WV4A 3R5YA 3RH7A 3CB0A 4YWNA 3EC6A 2HHZA 4ZKYA 3ZOHA 2HQ7A 2QCKA 3K88A 4Z85A 4R82A 2ECUA 1WGBA 2VPAA 4HMVA 5JABA 3H96A 1USCA 4YBNA 3HY8A 2NR4A 3BNKA 4QVBA 1YLNA 1W3OA 2R6VA 2RE7A 1G79A 2X1KA 1WLKA 3VY5A 2ARZA 1G76A 3K87A 1Y30A 3R5PA 3DMBA 2HTDA 3CP3A 4Y9IA 2IMLA 1G78A 3GASA 4F07A 1USFA 3BPKA 1W3PA 2D38A 3VY2A 3DNHA 3ZOCA 3ZODA 2D5MA 3BA3A 3SWJA 2GJGA 3A6RA 3HMZA 3TGVA 3F7EA 3NFWA 4HMXA 2OL5A 3IN6A 1NRGA 1CI0A 2I02A 2PTFA 1G77A 3U34A 1FLMA 1EJEA 2I51A 3E4VA 1I0SA 4HMWA 2D36A 3U35A 1RZ1A 3A6QA 1DNLA 5BNCA 3DB0A 5CHEC 4HMTA 2A2JA 3U5WA 2OU5A 1WLIA 1AXJA 1YOAA 4HMSA 4HX6A 4L82A 2E83A 1W9AA 3AWHA 1W3RA 3ZOGA 2HTIA 1RZ0A 2IG6A 4XJ2A 5CHOA 3VYAA 1RFEA 2Q9KA 3FGEA 3K86A 3R5LA 2RDEA 3R5WA 3AMFA 3U0IA 1VL7A 1T9MA 2AQ6A 2IABA 4N7RC 2HQ9A 4XHYA 1XHNA 1JNWA 1XXOA
chains in the Genus database with same CATH superfamily
2FURA 2FG9A 2L1TA 3A20A 2K4QA 3EAAA 1W3QA 3ZOEA 3ZOFA 2R0XA 3KYGA 1TY9A 4HMUA 4IRAA 4HKHA 5ESCA 2D37A 3R5RA 1I0RA 3KYFA 2X1JA 3B5MA 3V4HA 2ASFA 3FKHA 3R5ZA 2ECRA 4UHVA 2QEAA 2ED4A 3PFTA 2FHQA 1WV4A 3R5YA 3RH7A 3CB0A 4YWNA 3EC6A 2HHZA 4ZKYA 3ZOHA 2HQ7A 2QCKA 3K88A 4Z85A 4R82A 2ECUA 1WGBA 2VPAA 4HMVA 5JABA 3H96A 1USCA 4YBNA 3HY8A 4W64A 2NR4A 3BNKA 4QVBA 1YLNA 1W3OA 2R6VA 2RE7A 1G79A 2X1KA 1WLKA 3VY5A 2ARZA 1G76A 3K87A 1Y30A 3R5PA 3DMBA 2HTDA 3CP3A 4Y9IA 2IMLA 1G78A 3GASA 4F07A 1USFA 3BPKA 1W3PA 2D38A 3VY2A 3DNHA 3ZOCA 3ZODA 2D5MA 3BA3A 4TV4A 3SWJA 2GJGA 3A6RA 3HMZA 3TGVA 3F7EA 3NFWA 4HMXA 2OL5A 3IN6A 1NRGA 1CI0A 2I02A 2PTFA 1G77A 3U34A 1FLMA 1EJEA 2I51A 3E4VA 1I0SA 4HMWA 2D36A 3U35A 1RZ1A 3A6QA 1DNLA 5BNCA 3DB0A 5CHEC 4HMTA 2A2JA 3U5WA 2OU5A 1WLIA 1AXJA 1Y12A 1YOAA 4HMSA 4HX6A 4L82A 2E83A 1W9AA 3AWHA 1W3RA 3HE1A 3ZOGA 2HTIA 1RZ0A 2IG6A 4XJ2A 5CHOA 3VYAA 1RFEA 2Q9KA 3FGEA 3K86A 3R5LA 2RDEA 3R5WA 3AMFA 3U0IA 1VL7A 1T9MA 2AQ6A 2IABA 4N7RC 2HQ9A 4XHYA 1XHNA 1JNWA 4MTKA 2P5ZX 2GUJA 1XXOA
chains in the Genus database with same CATH topology
2FURA 2FG9A 3A20A 3ZOEA 1W3QA 3ZOFA 2R0XA 3KYGA 1TY9A 4HMUA 4IRAA 5ESCA 2D37A 3R5RA 1I0RA 3KYFA 2X1JA 3B5MA 2ASFA 3FKHA 3R5ZA 2ECRA 2QEAA 2ED4A 3PFTA 2FHQA 1WV4A 3R5YA 3RH7A 3CB0A 4YWNA 3EC6A 2HHZA 4ZKYA 3ZOHA 2HQ7A 2QCKA 3K88A 4Z85A 4R82A 2ECUA 1WGBA 2VPAA 4HMVA 5JABA 3H96A 1USCA 4YBNA 3HY8A 2NR4A 3BNKA 4QVBA 1YLNA 1W3OA 2R6VA 2RE7A 1G79A 2X1KA 1WLKA 3VY5A 2ARZA 1G76A 3K87A 1Y30A 3R5PA 3DMBA 2HTDA 3CP3A 4Y9IA 2IMLA 1G78A 3GASA 4F07A 1USFA 3BPKA 1W3PA 2D38A 3VY2A 3DNHA 3ZOCA 3ZODA 2D5MA 3BA3A 3SWJA 2GJGA 3A6RA 3HMZA 3TGVA 3F7EA 3NFWA 4HMXA 2OL5A 3IN6A 1NRGA 1CI0A 2I02A 2PTFA 1G77A 3U34A 1FLMA 1EJEA 2I51A 3E4VA 1I0SA 4HMWA 2D36A 3U35A 1RZ1A 3A6QA 1DNLA 5BNCA 3DB0A 5CHEC 4HMTA 2A2JA 3U5WA 2OU5A 1WLIA 1AXJA 1YOAA 4HMSA 4HX6A 4L82A 2E83A 1W9AA 3AWHA 1W3RA 3ZOGA 2HTIA 1RZ0A 2IG6A 4XJ2A 5CHOA 3VYAA 1RFEA 2Q9KA 3FGEA 3K86A 3R5LA 2RDEA 3R5WA 3AMFA 3U0IA 1VL7A 1T9MA 2AQ6A 2IABA 4N7RC 2HQ9A 4XHYA 1XHNA 1JNWA 1XXOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUR A;  2FG9 A;  3A20 A;  3ZOE A;  1W3Q A;  3ZOF A;  2R0X A;  3KYG A;  1TY9 A;  4HMU A;  4IRA A;  5ESC A;  2D37 A;  3R5R A;  1I0R A;  3KYF A;  2X1J A;  3B5M A;  2ASF A;  3FKH A;  3R5Z A;  2ECR A;  2QEA A;  2ED4 A;  3PFT A;  2FHQ A;  1WV4 A;  3R5Y A;  3RH7 A;  3CB0 A;  4YWN A;  3EC6 A;  2HHZ A;  4ZKY A;  3ZOH A;  2HQ7 A;  2QCK A;  3K88 A;  4Z85 A;  4R82 A;  2ECU A;  1WGB A;  2VPA A;  4HMV A;  5JAB A;  3H96 A;  1USC A;  4YBN A;  3HY8 A;  2NR4 A;  3BNK A;  4QVB A;  1YLN A;  1W3O A;  2R6V A;  2RE7 A;  1G79 A;  2X1K A;  1WLK A;  3VY5 A;  2ARZ A;  1G76 A;  3K87 A;  1Y30 A;  3R5P A;  3DMB A;  2HTD A;  3CP3 A;  4Y9I A;  2IML A;  1G78 A;  3GAS A;  4F07 A;  1USF A;  3BPK A;  1W3P A;  2D38 A;  3VY2 A;  3DNH A;  3ZOC A;  3ZOD A;  2D5M A;  3BA3 A;  3SWJ A;  2GJG A;  3A6R A;  3HMZ A;  3TGV A;  3F7E A;  3NFW A;  4HMX A;  2OL5 A;  3IN6 A;  1NRG A;  1CI0 A;  2I02 A;  2PTF A;  1G77 A;  3U34 A;  1FLM A;  1EJE A;  2I51 A;  3E4V A;  1I0S A;  4HMW A;  2D36 A;  3U35 A;  1RZ1 A;  3A6Q A;  1DNL A;  5BNC A;  3DB0 A;  5CHE C;  4HMT A;  2A2J A;  3U5W A;  2OU5 A;  1WLI A;  1AXJ A;  1YOA A;  4HMS A;  4HX6 A;  4L82 A;  2E83 A;  1W9A A;  3AWH A;  1W3R A;  3ZOG A;  2HTI A;  1RZ0 A;  2IG6 A;  4XJ2 A;  5CHO A;  3VYA A;  1RFE A;  2Q9K A;  3FGE A;  3K86 A;  3R5L A;  2RDE A;  3R5W A;  3AMF A;  3U0I A;  1VL7 A;  1T9M A;  2AQ6 A;  2IAB A;  4N7R C;  2HQ9 A;  4XHY A;  1XHN A;  1JNW A;  1XXO A; 
#chains in the Genus database with same CATH topology
 2FUR A;  2FG9 A;  2L1T A;  3A20 A;  2K4Q A;  3EAA A;  1W3Q A;  3ZOE A;  3ZOF A;  2R0X A;  3KYG A;  1TY9 A;  4HMU A;  4IRA A;  4HKH A;  5ESC A;  2D37 A;  3R5R A;  1I0R A;  3KYF A;  2X1J A;  3B5M A;  3V4H A;  2ASF A;  3FKH A;  3R5Z A;  2ECR A;  4UHV A;  2QEA A;  2ED4 A;  3PFT A;  2FHQ A;  1WV4 A;  3R5Y A;  3RH7 A;  3CB0 A;  4YWN A;  3EC6 A;  2HHZ A;  4ZKY A;  3ZOH A;  2HQ7 A;  2QCK A;  3K88 A;  4Z85 A;  4R82 A;  2ECU A;  1WGB A;  2VPA A;  4HMV A;  5JAB A;  3H96 A;  1USC A;  4YBN A;  3HY8 A;  4W64 A;  2NR4 A;  3BNK A;  4QVB A;  1YLN A;  1W3O A;  2R6V A;  2RE7 A;  1G79 A;  2X1K A;  1WLK A;  3VY5 A;  2ARZ A;  1G76 A;  3K87 A;  1Y30 A;  3R5P A;  3DMB A;  2HTD A;  3CP3 A;  4Y9I A;  2IML A;  1G78 A;  3GAS A;  4F07 A;  1USF A;  3BPK A;  1W3P A;  2D38 A;  3VY2 A;  3DNH A;  3ZOC A;  3ZOD A;  2D5M A;  3BA3 A;  4TV4 A;  3SWJ A;  2GJG A;  3A6R A;  3HMZ A;  3TGV A;  3F7E A;  3NFW A;  4HMX A;  2OL5 A;  3IN6 A;  1NRG A;  1CI0 A;  2I02 A;  2PTF A;  1G77 A;  3U34 A;  1FLM A;  1EJE A;  2I51 A;  3E4V A;  1I0S A;  4HMW A;  2D36 A;  3U35 A;  1RZ1 A;  3A6Q A;  1DNL A;  5BNC A;  3DB0 A;  5CHE C;  4HMT A;  2A2J A;  3U5W A;  2OU5 A;  1WLI A;  1AXJ A;  1Y12 A;  1YOA A;  4HMS A;  4HX6 A;  4L82 A;  2E83 A;  1W9A A;  3AWH A;  1W3R A;  3HE1 A;  3ZOG A;  2HTI A;  1RZ0 A;  2IG6 A;  4XJ2 A;  5CHO A;  3VYA A;  1RFE A;  2Q9K A;  3FGE A;  3K86 A;  3R5L A;  2RDE A;  3R5W A;  3AMF A;  3U0I A;  1VL7 A;  1T9M A;  2AQ6 A;  2IAB A;  4N7R C;  2HQ9 A;  4XHY A;  1XHN A;  1JNW A;  4MTK A;  2P5Z X;  2GUJ A;  1XXO A; 
#chains in the Genus database with same CATH homology
 2FUR A;  2FG9 A;  3A20 A;  3ZOE A;  1W3Q A;  3ZOF A;  2R0X A;  3KYG A;  1TY9 A;  4HMU A;  4IRA A;  5ESC A;  2D37 A;  3R5R A;  1I0R A;  3KYF A;  2X1J A;  3B5M A;  2ASF A;  3FKH A;  3R5Z A;  2ECR A;  2QEA A;  2ED4 A;  3PFT A;  2FHQ A;  1WV4 A;  3R5Y A;  3RH7 A;  3CB0 A;  4YWN A;  3EC6 A;  2HHZ A;  4ZKY A;  3ZOH A;  2HQ7 A;  2QCK A;  3K88 A;  4Z85 A;  4R82 A;  2ECU A;  1WGB A;  2VPA A;  4HMV A;  5JAB A;  3H96 A;  1USC A;  4YBN A;  3HY8 A;  2NR4 A;  3BNK A;  4QVB A;  1YLN A;  1W3O A;  2R6V A;  2RE7 A;  1G79 A;  2X1K A;  1WLK A;  3VY5 A;  2ARZ A;  1G76 A;  3K87 A;  1Y30 A;  3R5P A;  3DMB A;  2HTD A;  3CP3 A;  4Y9I A;  2IML A;  1G78 A;  3GAS A;  4F07 A;  1USF A;  3BPK A;  1W3P A;  2D38 A;  3VY2 A;  3DNH A;  3ZOC A;  3ZOD A;  2D5M A;  3BA3 A;  3SWJ A;  2GJG A;  3A6R A;  3HMZ A;  3TGV A;  3F7E A;  3NFW A;  4HMX A;  2OL5 A;  3IN6 A;  1NRG A;  1CI0 A;  2I02 A;  2PTF A;  1G77 A;  3U34 A;  1FLM A;  1EJE A;  2I51 A;  3E4V A;  1I0S A;  4HMW A;  2D36 A;  3U35 A;  1RZ1 A;  3A6Q A;  1DNL A;  5BNC A;  3DB0 A;  5CHE C;  4HMT A;  2A2J A;  3U5W A;  2OU5 A;  1WLI A;  1AXJ A;  1YOA A;  4HMS A;  4HX6 A;  4L82 A;  2E83 A;  1W9A A;  3AWH A;  1W3R A;  3ZOG A;  2HTI A;  1RZ0 A;  2IG6 A;  4XJ2 A;  5CHO A;  3VYA A;  1RFE A;  2Q9K A;  3FGE A;  3K86 A;  3R5L A;  2RDE A;  3R5W A;  3AMF A;  3U0I A;  1VL7 A;  1T9M A;  2AQ6 A;  2IAB A;  4N7R C;  2HQ9 A;  4XHY A;  1XHN A;  1JNW A;  1XXO A; 
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similar chains in the Genus database (?% sequence similarity)
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