2OL5A

Crystal structure of a protease synthase and sporulation negative regulatory protein pai 2 from bacillus stearothermophilus
Total Genus 36
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
189
structure length
183
Chain Sequence
DPDVAYQVIEENSFATLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLMLSGMNKGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-21)TI6 (111-114)TI3 (60-63)TVIII1 (57-60)EMPTYS1 (24-31)TI1 (45-48)S4 (50-56)S2 (34-41)TI'1 (31-34)S3 (43-44)TI7 (128-131)TI2 (56-59)TIV2 (62-65)TII1 (65-68)S5 (68-81)S7 (150-163)TI5 (83-86)S6 (94-108)3H1 (115-118)TIV5 (118-121)3H2 (121-125)3H3 (145-148)AH2 (172-184)TIV3 (88-91)TI4 (82-85)TI8 (167-170)Updating...
connected with : NaN
molecule tags Transcription regulator
source organism Geobacillus stearothermophilus
publication title Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.
pubmed doi rcsb
molecule keywords PAI 2 protein
total genus 36
structure length 183
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04299 FMN_bind_2 Putative FMN-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2ol5A00
1W3QA 2D38A 3B5MA 4XJ2A 4HMSA 3BNKA 1XHNA 3AWHA 3K88A 1YOAA 2IMLA 3VY5A 3AMFA 3R5LA 3RH7A 3DB0A 3ZOEA 2D5MA 1T9MA 4ZKYA 4XHYA 5ESCA 1WGBA 3SWJA 4R82A 1JNWA 2PTFA 1I0RA 3GASA 2I02A 3K87A 3ZOFA 1NRGA 3U0IA 1WLIA 2E83A 2ECUA 1W3PA 2HTIA 2X1KA 2VPAA 4HMVA 4HMUA 3VY2A 3EC6A 1WLKA 3A20A 3ZOGA 1USFA 3E4VA 3ZOHA 2ECRA 3HMZA 3U34A 1RFEA 3H96A 2HHZA 3R5WA 1DNLA 2RDEA 1TY9A 2QCKA 1USCA 4N7RC 2X1JA 4YBNA 3R5YA 2AQ6A 1AXJA 3U5WA 3R5RA 1CI0A 1RZ1A 4HMXA 2IABA 3NFWA 3DMBA 2QEAA 1YLNA 2FHQA 4F07A 3FKHA 3CB0A 1VL7A 2FURA 2D36A 3A6RA 3CP3A 1EJEA 4HMWA 2RE7A 2D37A 2A2JA 2ARZA 2ED4A 2GJGA 3U35A 4Z85A 2OL5A 3A6QA 3VYAA 1RZ0A 3ZOCA 4QVBA 2ASFA 1W3RA 3F7EA 2HQ7A 1Y30A 1W3OA 3BA3A 1XXOA 3BPKA 3HY8A 5JABA 2R0XA 4YWNA 3TGVA 5CHOA 4L82A 3KYFA 2Q9KA 1FLMA 4HX6A 3DNHA 3ZODA 2HQ9A 3R5ZA 4HMTA 2R6VA 2FG9A 3FGEA 1W9AA 5BNCA 3PFTA 2IG6A 1WV4A 2I51A 2HTDA 3KYGA 4Y9IA 2OU5A 3R5PA 5CHEC 1G76A 1G77A 3IN6A 1I0SA 4IRAA 1G78A 3K86A 1G79A 2NR4A
chains in the Genus database with same CATH superfamily
1W3QA 2D38A 3B5MA 4XJ2A 4HMSA 3BNKA 1XHNA 3AWHA 3K88A 1YOAA 2IMLA 4W64A 3VY5A 3AMFA 3R5LA 3RH7A 3DB0A 3ZOEA 4TV4A 2D5MA 1T9MA 4ZKYA 2GUJA 4XHYA 5ESCA 1WGBA 3SWJA 4R82A 1JNWA 3HE1A 2PTFA 1I0RA 3GASA 2I02A 3K87A 4MTKA 1NRGA 3ZOFA 3U0IA 1WLIA 2E83A 2ECUA 1W3PA 2HTIA 2X1KA 2VPAA 4HMVA 4HMUA 3VY2A 3EC6A 1WLKA 3A20A 3ZOGA 1USFA 3E4VA 3ZOHA 4UHVA 2ECRA 3HMZA 3U34A 1RFEA 3H96A 2HHZA 3R5WA 1DNLA 2RDEA 1TY9A 2QCKA 1USCA 3EAAA 4N7RC 2X1JA 4YBNA 3R5YA 2AQ6A 1AXJA 3U5WA 3R5RA 1CI0A 1RZ1A 4HMXA 2IABA 3NFWA 3DMBA 2QEAA 1YLNA 2FHQA 2P5ZX 3FKHA 4F07A 3CB0A 1VL7A 2FURA 2D36A 3V4HA 3A6RA 3CP3A 1EJEA 4HMWA 2RE7A 2D37A 2A2JA 2ARZA 2ED4A 2GJGA 3U35A 4Z85A 2OL5A 3A6QA 3VYAA 1RZ0A 3ZOCA 4HKHA 4QVBA 2ASFA 1W3RA 3F7EA 2HQ7A 1Y30A 1W3OA 3BA3A 1XXOA 3BPKA 3HY8A 5JABA 2L1TA 2R0XA 4YWNA 3TGVA 5CHOA 4L82A 3KYFA 2Q9KA 1FLMA 1Y12A 4HX6A 3DNHA 3ZODA 2HQ9A 3R5ZA 4HMTA 2R6VA 2FG9A 3FGEA 1W9AA 2K4QA 5BNCA 3PFTA 2IG6A 1WV4A 2I51A 2HTDA 3KYGA 4Y9IA 2OU5A 3R5PA 5CHEC 1G76A 1G77A 3IN6A 1I0SA 4IRAA 1G78A 3K86A 1G79A 2NR4A
chains in the Genus database with same CATH topology
1W3QA 2D38A 3B5MA 4XJ2A 4HMSA 3BNKA 1XHNA 3AWHA 3K88A 1YOAA 2IMLA 3VY5A 3AMFA 3R5LA 3RH7A 3DB0A 3ZOEA 2D5MA 1T9MA 4ZKYA 4XHYA 5ESCA 1WGBA 3SWJA 4R82A 1JNWA 2PTFA 1I0RA 3GASA 2I02A 3K87A 3ZOFA 1NRGA 3U0IA 1WLIA 2E83A 2ECUA 1W3PA 2HTIA 2X1KA 2VPAA 4HMVA 4HMUA 3VY2A 3EC6A 1WLKA 3A20A 3ZOGA 1USFA 3E4VA 3ZOHA 2ECRA 3HMZA 3U34A 1RFEA 3H96A 2HHZA 3R5WA 1DNLA 2RDEA 1TY9A 2QCKA 1USCA 4N7RC 2X1JA 4YBNA 3R5YA 2AQ6A 1AXJA 3U5WA 3R5RA 1CI0A 1RZ1A 4HMXA 2IABA 3NFWA 3DMBA 2QEAA 1YLNA 2FHQA 4F07A 3FKHA 3CB0A 1VL7A 2FURA 2D36A 3A6RA 3CP3A 1EJEA 4HMWA 2RE7A 2D37A 2A2JA 2ARZA 2ED4A 2GJGA 3U35A 4Z85A 2OL5A 3A6QA 3VYAA 1RZ0A 3ZOCA 4QVBA 2ASFA 1W3RA 3F7EA 2HQ7A 1Y30A 1W3OA 3BA3A 1XXOA 3BPKA 3HY8A 5JABA 2R0XA 4YWNA 3TGVA 5CHOA 4L82A 3KYFA 2Q9KA 1FLMA 4HX6A 3DNHA 3ZODA 2HQ9A 3R5ZA 4HMTA 2R6VA 2FG9A 3FGEA 1W9AA 5BNCA 3PFTA 2IG6A 1WV4A 2I51A 2HTDA 3KYGA 4Y9IA 2OU5A 3R5PA 5CHEC 1G76A 1G77A 3IN6A 1I0SA 4IRAA 1G78A 3K86A 1G79A 2NR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3Q A;  2D38 A;  3B5M A;  4XJ2 A;  4HMS A;  3BNK A;  1XHN A;  3AWH A;  3K88 A;  1YOA A;  2IML A;  3VY5 A;  3AMF A;  3R5L A;  3RH7 A;  3DB0 A;  3ZOE A;  2D5M A;  1T9M A;  4ZKY A;  4XHY A;  5ESC A;  1WGB A;  3SWJ A;  4R82 A;  1JNW A;  2PTF A;  1I0R A;  3GAS A;  2I02 A;  3K87 A;  3ZOF A;  1NRG A;  3U0I A;  1WLI A;  2E83 A;  2ECU A;  1W3P A;  2HTI A;  2X1K A;  2VPA A;  4HMV A;  4HMU A;  3VY2 A;  3EC6 A;  1WLK A;  3A20 A;  3ZOG A;  1USF A;  3E4V A;  3ZOH A;  2ECR A;  3HMZ A;  3U34 A;  1RFE A;  3H96 A;  2HHZ A;  3R5W A;  1DNL A;  2RDE A;  1TY9 A;  2QCK A;  1USC A;  4N7R C;  2X1J A;  4YBN A;  3R5Y A;  2AQ6 A;  1AXJ A;  3U5W A;  3R5R A;  1CI0 A;  1RZ1 A;  4HMX A;  2IAB A;  3NFW A;  3DMB A;  2QEA A;  1YLN A;  2FHQ A;  4F07 A;  3FKH A;  3CB0 A;  1VL7 A;  2FUR A;  2D36 A;  3A6R A;  3CP3 A;  1EJE A;  4HMW A;  2RE7 A;  2D37 A;  2A2J A;  2ARZ A;  2ED4 A;  2GJG A;  3U35 A;  4Z85 A;  2OL5 A;  3A6Q A;  3VYA A;  1RZ0 A;  3ZOC A;  4QVB A;  2ASF A;  1W3R A;  3F7E A;  2HQ7 A;  1Y30 A;  1W3O A;  3BA3 A;  1XXO A;  3BPK A;  3HY8 A;  5JAB A;  2R0X A;  4YWN A;  3TGV A;  5CHO A;  4L82 A;  3KYF A;  2Q9K A;  1FLM A;  4HX6 A;  3DNH A;  3ZOD A;  2HQ9 A;  3R5Z A;  4HMT A;  2R6V A;  2FG9 A;  3FGE A;  1W9A A;  5BNC A;  3PFT A;  2IG6 A;  1WV4 A;  2I51 A;  2HTD A;  3KYG A;  4Y9I A;  2OU5 A;  3R5P A;  5CHE C;  1G76 A;  1G77 A;  3IN6 A;  1I0S A;  4IRA A;  1G78 A;  3K86 A;  1G79 A;  2NR4 A; 
#chains in the Genus database with same CATH topology
 1W3Q A;  2D38 A;  3B5M A;  4XJ2 A;  4HMS A;  3BNK A;  1XHN A;  3AWH A;  3K88 A;  1YOA A;  2IML A;  4W64 A;  3VY5 A;  3AMF A;  3R5L A;  3RH7 A;  3DB0 A;  3ZOE A;  4TV4 A;  2D5M A;  1T9M A;  4ZKY A;  2GUJ A;  4XHY A;  5ESC A;  1WGB A;  3SWJ A;  4R82 A;  1JNW A;  3HE1 A;  2PTF A;  1I0R A;  3GAS A;  2I02 A;  3K87 A;  4MTK A;  1NRG A;  3ZOF A;  3U0I A;  1WLI A;  2E83 A;  2ECU A;  1W3P A;  2HTI A;  2X1K A;  2VPA A;  4HMV A;  4HMU A;  3VY2 A;  3EC6 A;  1WLK A;  3A20 A;  3ZOG A;  1USF A;  3E4V A;  3ZOH A;  4UHV A;  2ECR A;  3HMZ A;  3U34 A;  1RFE A;  3H96 A;  2HHZ A;  3R5W A;  1DNL A;  2RDE A;  1TY9 A;  2QCK A;  1USC A;  3EAA A;  4N7R C;  2X1J A;  4YBN A;  3R5Y A;  2AQ6 A;  1AXJ A;  3U5W A;  3R5R A;  1CI0 A;  1RZ1 A;  4HMX A;  2IAB A;  3NFW A;  3DMB A;  2QEA A;  1YLN A;  2FHQ A;  2P5Z X;  3FKH A;  4F07 A;  3CB0 A;  1VL7 A;  2FUR A;  2D36 A;  3V4H A;  3A6R A;  3CP3 A;  1EJE A;  4HMW A;  2RE7 A;  2D37 A;  2A2J A;  2ARZ A;  2ED4 A;  2GJG A;  3U35 A;  4Z85 A;  2OL5 A;  3A6Q A;  3VYA A;  1RZ0 A;  3ZOC A;  4HKH A;  4QVB A;  2ASF A;  1W3R A;  3F7E A;  2HQ7 A;  1Y30 A;  1W3O A;  3BA3 A;  1XXO A;  3BPK A;  3HY8 A;  5JAB A;  2L1T A;  2R0X A;  4YWN A;  3TGV A;  5CHO A;  4L82 A;  3KYF A;  2Q9K A;  1FLM A;  1Y12 A;  4HX6 A;  3DNH A;  3ZOD A;  2HQ9 A;  3R5Z A;  4HMT A;  2R6V A;  2FG9 A;  3FGE A;  1W9A A;  2K4Q A;  5BNC A;  3PFT A;  2IG6 A;  1WV4 A;  2I51 A;  2HTD A;  3KYG A;  4Y9I A;  2OU5 A;  3R5P A;  5CHE C;  1G76 A;  1G77 A;  3IN6 A;  1I0S A;  4IRA A;  1G78 A;  3K86 A;  1G79 A;  2NR4 A; 
#chains in the Genus database with same CATH homology
 1W3Q A;  2D38 A;  3B5M A;  4XJ2 A;  4HMS A;  3BNK A;  1XHN A;  3AWH A;  3K88 A;  1YOA A;  2IML A;  3VY5 A;  3AMF A;  3R5L A;  3RH7 A;  3DB0 A;  3ZOE A;  2D5M A;  1T9M A;  4ZKY A;  4XHY A;  5ESC A;  1WGB A;  3SWJ A;  4R82 A;  1JNW A;  2PTF A;  1I0R A;  3GAS A;  2I02 A;  3K87 A;  3ZOF A;  1NRG A;  3U0I A;  1WLI A;  2E83 A;  2ECU A;  1W3P A;  2HTI A;  2X1K A;  2VPA A;  4HMV A;  4HMU A;  3VY2 A;  3EC6 A;  1WLK A;  3A20 A;  3ZOG A;  1USF A;  3E4V A;  3ZOH A;  2ECR A;  3HMZ A;  3U34 A;  1RFE A;  3H96 A;  2HHZ A;  3R5W A;  1DNL A;  2RDE A;  1TY9 A;  2QCK A;  1USC A;  4N7R C;  2X1J A;  4YBN A;  3R5Y A;  2AQ6 A;  1AXJ A;  3U5W A;  3R5R A;  1CI0 A;  1RZ1 A;  4HMX A;  2IAB A;  3NFW A;  3DMB A;  2QEA A;  1YLN A;  2FHQ A;  4F07 A;  3FKH A;  3CB0 A;  1VL7 A;  2FUR A;  2D36 A;  3A6R A;  3CP3 A;  1EJE A;  4HMW A;  2RE7 A;  2D37 A;  2A2J A;  2ARZ A;  2ED4 A;  2GJG A;  3U35 A;  4Z85 A;  2OL5 A;  3A6Q A;  3VYA A;  1RZ0 A;  3ZOC A;  4QVB A;  2ASF A;  1W3R A;  3F7E A;  2HQ7 A;  1Y30 A;  1W3O A;  3BA3 A;  1XXO A;  3BPK A;  3HY8 A;  5JAB A;  2R0X A;  4YWN A;  3TGV A;  5CHO A;  4L82 A;  3KYF A;  2Q9K A;  1FLM A;  4HX6 A;  3DNH A;  3ZOD A;  2HQ9 A;  3R5Z A;  4HMT A;  2R6V A;  2FG9 A;  3FGE A;  1W9A A;  5BNC A;  3PFT A;  2IG6 A;  1WV4 A;  2I51 A;  2HTD A;  3KYG A;  4Y9I A;  2OU5 A;  3R5P A;  5CHE C;  1G76 A;  1G77 A;  3IN6 A;  1I0S A;  4IRA A;  1G78 A;  3K86 A;  1G79 A;  2NR4 A; 
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similar chains in the Genus database (?% sequence similarity)
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