2OL5 | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	189
structure length	183
Chain Sequence	DPDVAYQVIEENSFATLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLMLSGMNKGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription regulator
source organism	Geobacillus stearothermophilus
publication title	Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus. pubmed doi rcsb
molecule keywords	PAI 2 protein
total genus	36
structure length	183
sequence length	189
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-01-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04299	FMN_bind_2	Putative FMN-binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	2ol5A00

2IABA 2OL5A 3VY5A 1G77A 1EJEA 2I02A 2ED4A 3DMBA 1W3OA 1NRGA 3CP3A 2X1KA 3KYFA 1TY9A 2D36A 3R5RA 3BPKA 3A20A 5ESCA 3ZOGA 5JABA 3R5LA 4Z85A 1RZ0A 1W3QA 1Y30A 3PFTA 4IRAA 3ZOEA 3FGEA 3DNHA 2FURA 1G76A 3KYGA 3R5ZA 3K87A 4HX6A 1G79A 4YBNA 3F7EA 2D37A 2ECUA 2I51A 2NR4A 2VPAA 2E83A 3H96A 3HY8A 3CB0A 2HTDA 2QCKA 1FLMA 3K88A 2D38A 3ZOFA 4HMTA 2A2JA 3DB0A 2ARZA 4XHYA 3A6QA 4HMVA 4Y9IA 1WV4A 3VY2A 3HMZA 1YOAA 3AWHA 3K86A 3U0IA 3FKHA 2QEAA 2D5MA 1W3RA 1G78A 1W3PA 3BA3A 3GASA 1WLIA 2HHZA 2R0XA 3EC6A 2GJGA 1CI0A 2AQ6A 4XJ2A 4HMUA 1WLKA 3U34A 2IMLA 1USCA 3NFWA 3AMFA 4R82A 2HQ7A 4YWNA 4HMWA 1RFEA 1I0SA 2OU5A 4ZKYA 2RDEA 3R5PA 3R5WA 3B5MA 2RE7A 3RH7A 3U5WA 3ZOCA 2FHQA 1VL7A 2ASFA 3E4VA 2PTFA 4QVBA 3VYAA 1WGBA 3TGVA 3SWJA 3R5YA 4HMSA 1DNLA 4HMXA 5CHOA 1I0RA 1USFA 4L82A 1W9AA 2ECRA 1XXOA 2X1JA 3IN6A 1AXJA 2IG6A 3A6RA 2FG9A 3U35A 1YLNA 2HQ9A 5CHEC 5BNCA 2R6VA 4F07A 3BNKA 1RZ1A 4N7RC 1T9MA 3ZODA 1JNWA 1XHNA 2Q9KA 3ZOHA 2HTIA
chains in the Genus database with same CATH superfamily

2IABA 2OL5A 3VY5A 1G77A 1EJEA 2L1TA 2I02A 2ED4A 4MTKA 3DMBA 1W3OA 1NRGA 3CP3A 2X1KA 3KYFA 1TY9A 2P5ZX 2D36A 3R5RA 3BPKA 3A20A 5ESCA 3ZOGA 5JABA 3R5LA 4Z85A 1RZ0A 1W3QA 1Y30A 3PFTA 4IRAA 3ZOEA 3FGEA 3DNHA 2FURA 1G76A 3KYGA 3R5ZA 3K87A 4HX6A 1G79A 4YBNA 3F7EA 2D37A 4HKHA 3HE1A 2ECUA 2I51A 2NR4A 1Y12A 2VPAA 2E83A 3H96A 3HY8A 3CB0A 2HTDA 2QCKA 1FLMA 3K88A 2D38A 3ZOFA 4HMTA 3V4HA 2A2JA 3DB0A 2ARZA 4XHYA 3A6QA 4HMVA 4Y9IA 1WV4A 3VY2A 3HMZA 1YOAA 3AWHA 3K86A 3U0IA 3FKHA 2QEAA 2D5MA 1W3RA 1G78A 1W3PA 3BA3A 3GASA 1WLIA 2HHZA 2R0XA 3EC6A 2GJGA 1CI0A 2AQ6A 4XJ2A 4HMUA 1WLKA 3U34A 2IMLA 1USCA 3NFWA 3AMFA 4R82A 2HQ7A 4YWNA 4HMWA 1RFEA 4TV4A 1I0SA 2OU5A 4ZKYA 2RDEA 3R5PA 3R5WA 3B5MA 2RE7A 3RH7A 3U5WA 3ZOCA 2FHQA 1VL7A 2ASFA 3E4VA 2PTFA 4QVBA 3VYAA 1WGBA 4UHVA 3TGVA 3SWJA 3R5YA 4HMSA 1DNLA 4HMXA 5CHOA 1I0RA 1USFA 4L82A 4W64A 1W9AA 2ECRA 1XXOA 2GUJA 2X1JA 3EAAA 3IN6A 2IG6A 3A6RA 2FG9A 1AXJA 3U35A 1YLNA 2HQ9A 5CHEC 5BNCA 2K4QA 2R6VA 4F07A 3BNKA 1RZ1A 4N7RC 1T9MA 3ZODA 1JNWA 1XHNA 2Q9KA 3ZOHA 2HTIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2IAB A;  2OL5 A;  3VY5 A;  1G77 A;  1EJE A;  2I02 A;  2ED4 A;  3DMB A;  1W3O A;  1NRG A;  3CP3 A;  2X1K A;  3KYF A;  1TY9 A;  2D36 A;  3R5R A;  3BPK A;  3A20 A;  5ESC A;  3ZOG A;  5JAB A;  3R5L A;  4Z85 A;  1RZ0 A;  1W3Q A;  1Y30 A;  3PFT A;  4IRA A;  3ZOE A;  3FGE A;  3DNH A;  2FUR A;  1G76 A;  3KYG A;  3R5Z A;  3K87 A;  4HX6 A;  1G79 A;  4YBN A;  3F7E A;  2D37 A;  2ECU A;  2I51 A;  2NR4 A;  2VPA A;  2E83 A;  3H96 A;  3HY8 A;  3CB0 A;  2HTD A;  2QCK A;  1FLM A;  3K88 A;  2D38 A;  3ZOF A;  4HMT A;  2A2J A;  3DB0 A;  2ARZ A;  4XHY A;  3A6Q A;  4HMV A;  4Y9I A;  1WV4 A;  3VY2 A;  3HMZ A;  1YOA A;  3AWH A;  3K86 A;  3U0I A;  3FKH A;  2QEA A;  2D5M A;  1W3R A;  1G78 A;  1W3P A;  3BA3 A;  3GAS A;  1WLI A;  2HHZ A;  2R0X A;  3EC6 A;  2GJG A;  1CI0 A;  2AQ6 A;  4XJ2 A;  4HMU A;  1WLK A;  3U34 A;  2IML A;  1USC A;  3NFW A;  3AMF A;  4R82 A;  2HQ7 A;  4YWN A;  4HMW A;  1RFE A;  1I0S A;  2OU5 A;  4ZKY A;  2RDE A;  3R5P A;  3R5W A;  3B5M A;  2RE7 A;  3RH7 A;  3U5W A;  3ZOC A;  2FHQ A;  1VL7 A;  2ASF A;  3E4V A;  2PTF A;  4QVB A;  3VYA A;  1WGB A;  3TGV A;  3SWJ A;  3R5Y A;  4HMS A;  1DNL A;  4HMX A;  5CHO A;  1I0R A;  1USF A;  4L82 A;  1W9A A;  2ECR A;  1XXO A;  2X1J A;  3IN6 A;  1AXJ A;  2IG6 A;  3A6R A;  2FG9 A;  3U35 A;  1YLN A;  2HQ9 A;  5CHE C;  5BNC A;  2R6V A;  4F07 A;  3BNK A;  1RZ1 A;  4N7R C;  1T9M A;  3ZOD A;  1JNW A;  1XHN A;  2Q9K A;  3ZOH A;  2HTI A; 
#chains in the Genus database with same CATH topology
 2IAB A;  2OL5 A;  3VY5 A;  1G77 A;  1EJE A;  2L1T A;  2I02 A;  2ED4 A;  4MTK A;  3DMB A;  1W3O A;  1NRG A;  3CP3 A;  2X1K A;  3KYF A;  1TY9 A;  2P5Z X;  2D36 A;  3R5R A;  3BPK A;  3A20 A;  5ESC A;  3ZOG A;  5JAB A;  3R5L A;  4Z85 A;  1RZ0 A;  1W3Q A;  1Y30 A;  3PFT A;  4IRA A;  3ZOE A;  3FGE A;  3DNH A;  2FUR A;  1G76 A;  3KYG A;  3R5Z A;  3K87 A;  4HX6 A;  1G79 A;  4YBN A;  3F7E A;  2D37 A;  4HKH A;  3HE1 A;  2ECU A;  2I51 A;  2NR4 A;  1Y12 A;  2VPA A;  2E83 A;  3H96 A;  3HY8 A;  3CB0 A;  2HTD A;  2QCK A;  1FLM A;  3K88 A;  2D38 A;  3ZOF A;  4HMT A;  3V4H A;  2A2J A;  3DB0 A;  2ARZ A;  4XHY A;  3A6Q A;  4HMV A;  4Y9I A;  1WV4 A;  3VY2 A;  3HMZ A;  1YOA A;  3AWH A;  3K86 A;  3U0I A;  3FKH A;  2QEA A;  2D5M A;  1W3R A;  1G78 A;  1W3P A;  3BA3 A;  3GAS A;  1WLI A;  2HHZ A;  2R0X A;  3EC6 A;  2GJG A;  1CI0 A;  2AQ6 A;  4XJ2 A;  4HMU A;  1WLK A;  3U34 A;  2IML A;  1USC A;  3NFW A;  3AMF A;  4R82 A;  2HQ7 A;  4YWN A;  4HMW A;  1RFE A;  4TV4 A;  1I0S A;  2OU5 A;  4ZKY A;  2RDE A;  3R5P A;  3R5W A;  3B5M A;  2RE7 A;  3RH7 A;  3U5W A;  3ZOC A;  2FHQ A;  1VL7 A;  2ASF A;  3E4V A;  2PTF A;  4QVB A;  3VYA A;  1WGB A;  4UHV A;  3TGV A;  3SWJ A;  3R5Y A;  4HMS A;  1DNL A;  4HMX A;  5CHO A;  1I0R A;  1USF A;  4L82 A;  4W64 A;  1W9A A;  2ECR A;  1XXO A;  2GUJ A;  2X1J A;  3EAA A;  3IN6 A;  2IG6 A;  3A6R A;  2FG9 A;  1AXJ A;  3U35 A;  1YLN A;  2HQ9 A;  5CHE C;  5BNC A;  2K4Q A;  2R6V A;  4F07 A;  3BNK A;  1RZ1 A;  4N7R C;  1T9M A;  3ZOD A;  1JNW A;  1XHN A;  2Q9K A;  3ZOH A;  2HTI A; 
#chains in the Genus database with same CATH homology
 2IAB A;  2OL5 A;  3VY5 A;  1G77 A;  1EJE A;  2I02 A;  2ED4 A;  3DMB A;  1W3O A;  1NRG A;  3CP3 A;  2X1K A;  3KYF A;  1TY9 A;  2D36 A;  3R5R A;  3BPK A;  3A20 A;  5ESC A;  3ZOG A;  5JAB A;  3R5L A;  4Z85 A;  1RZ0 A;  1W3Q A;  1Y30 A;  3PFT A;  4IRA A;  3ZOE A;  3FGE A;  3DNH A;  2FUR A;  1G76 A;  3KYG A;  3R5Z A;  3K87 A;  4HX6 A;  1G79 A;  4YBN A;  3F7E A;  2D37 A;  2ECU A;  2I51 A;  2NR4 A;  2VPA A;  2E83 A;  3H96 A;  3HY8 A;  3CB0 A;  2HTD A;  2QCK A;  1FLM A;  3K88 A;  2D38 A;  3ZOF A;  4HMT A;  2A2J A;  3DB0 A;  2ARZ A;  4XHY A;  3A6Q A;  4HMV A;  4Y9I A;  1WV4 A;  3VY2 A;  3HMZ A;  1YOA A;  3AWH A;  3K86 A;  3U0I A;  3FKH A;  2QEA A;  2D5M A;  1W3R A;  1G78 A;  1W3P A;  3BA3 A;  3GAS A;  1WLI A;  2HHZ A;  2R0X A;  3EC6 A;  2GJG A;  1CI0 A;  2AQ6 A;  4XJ2 A;  4HMU A;  1WLK A;  3U34 A;  2IML A;  1USC A;  3NFW A;  3AMF A;  4R82 A;  2HQ7 A;  4YWN A;  4HMW A;  1RFE A;  1I0S A;  2OU5 A;  4ZKY A;  2RDE A;  3R5P A;  3R5W A;  3B5M A;  2RE7 A;  3RH7 A;  3U5W A;  3ZOC A;  2FHQ A;  1VL7 A;  2ASF A;  3E4V A;  2PTF A;  4QVB A;  3VYA A;  1WGB A;  3TGV A;  3SWJ A;  3R5Y A;  4HMS A;  1DNL A;  4HMX A;  5CHO A;  1I0R A;  1USF A;  4L82 A;  1W9A A;  2ECR A;  1XXO A;  2X1J A;  3IN6 A;  1AXJ A;  2IG6 A;  3A6R A;  2FG9 A;  3U35 A;  1YLN A;  2HQ9 A;  5CHE C;  5BNC A;  2R6V A;  4F07 A;  3BNK A;  1RZ1 A;  4N7R C;  1T9M A;  3ZOD A;  1JNW A;  1XHN A;  2Q9K A;  3ZOH A;  2HTI A;

None
similar chains in the Genus database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the Genus database (40% sequence similarity)

#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)

2OL5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations