2OL5A

Crystal structure of a protease synthase and sporulation negative regulatory protein pai 2 from bacillus stearothermophilus
Total Genus 36
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
189
structure length
183
Chain Sequence
DPDVAYQVIEENSFATLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLMLSGMNKGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-21)TI6 (111-114)TI3 (60-63)TVIII1 (57-60)EMPTYS1 (24-31)TI1 (45-48)S4 (50-56)S2 (34-41)TI'1 (31-34)S3 (43-44)TI7 (128-131)TI2 (56-59)TIV2 (62-65)TII1 (65-68)S5 (68-81)S7 (150-163)TI5 (83-86)S6 (94-108)3H1 (115-118)TIV5 (118-121)3H2 (121-125)3H3 (145-148)AH2 (172-184)TIV3 (88-91)TI4 (82-85)TI8 (167-170)Updating...
connected with : NaN
molecule tags Transcription regulator
source organism Geobacillus stearothermophilus
publication title Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.
pubmed doi rcsb
molecule keywords PAI 2 protein
total genus 36
structure length 183
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04299 FMN_bind_2 Putative FMN-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2ol5A00
1W3PA 1T9MA 2D38A 2X1KA 2ECUA 4HMVA 5JABA 4L82A 2ASFA 1W3QA 2HTIA 2HTDA 3DB0A 3U34A 4HMWA 4HMSA 1WLKA 2I51A 3R5LA 1CI0A 1YOAA 3R5PA 4HMXA 2RE7A 3A6QA 4IRAA 2PTFA 1WV4A 2HQ7A 5ESCA 3ZOCA 2ECRA 1RZ1A 3R5ZA 3RH7A 2D37A 3DMBA 1W3RA 1G77A 2Q9KA 4R82A 4HMUA 2AQ6A 3ZOGA 3IN6A 4XHYA 2FURA 2R6VA 3SWJA 4HMTA 4Y9IA 2QCKA 1W9AA 3K88A 3HY8A 2R0XA 3BNKA 2ED4A 3KYFA 3AWHA 3ZOFA 1FLMA 5BNCA 3GASA 1RFEA 3CP3A 1DNLA 3F7EA 2HQ9A 1I0RA 2IABA 3VY2A 1USCA 1VL7A 1RZ0A 3NFWA 3CB0A 3DNHA 3U0IA 3ZODA 1XXOA 2IG6A 1G76A 2OU5A 5CHOA 2RDEA 2D36A 2FG9A 3K87A 5CHEC 1TY9A 1YLNA 3U5WA 1AXJA 2FHQA 3H96A 3PFTA 2ARZA 2HHZA 4HX6A 1WLIA 3B5MA 1EJEA 4QVBA 3K86A 1WGBA 3HMZA 2VPAA 2I02A 2NR4A 3R5YA 1USFA 3A20A 3E4VA 1NRGA 3R5WA 3A6RA 1G78A 3ZOHA 2A2JA 1XHNA 1G79A 1I0SA 2QEAA 3BA3A 2E83A 4YWNA 3AMFA 4N7RC 3EC6A 4Z85A 1W3OA 2OL5A 2X1JA 3TGVA 3VYAA 2GJGA 4YBNA 3BPKA 2IMLA 3U35A 3ZOEA 1JNWA 3VY5A 3FGEA 4F07A 3KYGA 1Y30A 3R5RA 4XJ2A 3FKHA 2D5MA 4ZKYA
chains in the Genus database with same CATH superfamily
1W3PA 1T9MA 2D38A 2K4QA 2X1KA 2ECUA 4HMVA 5JABA 4L82A 2ASFA 1W3QA 2P5ZX 2HTIA 2HTDA 3DB0A 3U34A 4HMWA 4HMSA 1WLKA 2I51A 3R5LA 1CI0A 1YOAA 3R5PA 1Y12A 4HMXA 2RE7A 3A6QA 4IRAA 2PTFA 1WV4A 2HQ7A 5ESCA 3ZOCA 2ECRA 1RZ1A 3R5ZA 3RH7A 2D37A 3DMBA 1W3RA 1G77A 2Q9KA 4R82A 4HMUA 2AQ6A 4MTKA 3ZOGA 3IN6A 4W64A 4XHYA 2FURA 2R6VA 3SWJA 4HMTA 4Y9IA 2QCKA 1W9AA 3K88A 3HY8A 2R0XA 3BNKA 2ED4A 3KYFA 3AWHA 2GUJA 3ZOFA 1FLMA 5BNCA 3GASA 3HE1A 1RFEA 3EAAA 3CP3A 1DNLA 3F7EA 2HQ9A 1I0RA 2IABA 3VY2A 1USCA 1VL7A 1RZ0A 3NFWA 3CB0A 3DNHA 3U0IA 3ZODA 1XXOA 4UHVA 2IG6A 1G76A 2OU5A 5CHOA 2RDEA 2D36A 2FG9A 3K87A 5CHEC 1TY9A 1YLNA 3U5WA 1AXJA 2FHQA 3H96A 3PFTA 4HKHA 2ARZA 2HHZA 4HX6A 1WLIA 3B5MA 1EJEA 4QVBA 3K86A 2L1TA 1WGBA 3HMZA 3V4HA 2VPAA 2I02A 2NR4A 3R5YA 1USFA 3A20A 3E4VA 1NRGA 3R5WA 3A6RA 4TV4A 1G78A 3ZOHA 2A2JA 1XHNA 1G79A 1I0SA 2QEAA 3BA3A 2E83A 4YWNA 3AMFA 4N7RC 3EC6A 4Z85A 1W3OA 2OL5A 2X1JA 3TGVA 3VYAA 2GJGA 4YBNA 3BPKA 2IMLA 3U35A 3ZOEA 1JNWA 3VY5A 3FGEA 4F07A 3KYGA 1Y30A 3R5RA 4XJ2A 3FKHA 2D5MA 4ZKYA
chains in the Genus database with same CATH topology
1W3PA 1T9MA 2D38A 2X1KA 2ECUA 4HMVA 5JABA 4L82A 2ASFA 1W3QA 2HTIA 2HTDA 3DB0A 3U34A 4HMWA 4HMSA 1WLKA 2I51A 3R5LA 1CI0A 1YOAA 3R5PA 4HMXA 2RE7A 3A6QA 4IRAA 2PTFA 1WV4A 2HQ7A 5ESCA 3ZOCA 2ECRA 1RZ1A 3R5ZA 3RH7A 2D37A 3DMBA 1W3RA 1G77A 2Q9KA 4R82A 4HMUA 2AQ6A 3ZOGA 3IN6A 4XHYA 2FURA 2R6VA 3SWJA 4HMTA 4Y9IA 2QCKA 1W9AA 3K88A 3HY8A 2R0XA 3BNKA 2ED4A 3KYFA 3AWHA 3ZOFA 1FLMA 5BNCA 3GASA 1RFEA 3CP3A 1DNLA 3F7EA 2HQ9A 1I0RA 2IABA 3VY2A 1USCA 1VL7A 1RZ0A 3NFWA 3CB0A 3DNHA 3U0IA 3ZODA 1XXOA 2IG6A 1G76A 2OU5A 5CHOA 2RDEA 2D36A 2FG9A 3K87A 5CHEC 1TY9A 1YLNA 3U5WA 1AXJA 2FHQA 3H96A 3PFTA 2ARZA 2HHZA 4HX6A 1WLIA 3B5MA 1EJEA 4QVBA 3K86A 1WGBA 3HMZA 2VPAA 2I02A 2NR4A 3R5YA 1USFA 3A20A 3E4VA 1NRGA 3R5WA 3A6RA 1G78A 3ZOHA 2A2JA 1XHNA 1G79A 1I0SA 2QEAA 3BA3A 2E83A 4YWNA 3AMFA 4N7RC 3EC6A 4Z85A 1W3OA 2OL5A 2X1JA 3TGVA 3VYAA 2GJGA 4YBNA 3BPKA 2IMLA 3U35A 3ZOEA 1JNWA 3VY5A 3FGEA 4F07A 3KYGA 1Y30A 3R5RA 4XJ2A 3FKHA 2D5MA 4ZKYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3P A;  1T9M A;  2D38 A;  2X1K A;  2ECU A;  4HMV A;  5JAB A;  4L82 A;  2ASF A;  1W3Q A;  2HTI A;  2HTD A;  3DB0 A;  3U34 A;  4HMW A;  4HMS A;  1WLK A;  2I51 A;  3R5L A;  1CI0 A;  1YOA A;  3R5P A;  4HMX A;  2RE7 A;  3A6Q A;  4IRA A;  2PTF A;  1WV4 A;  2HQ7 A;  5ESC A;  3ZOC A;  2ECR A;  1RZ1 A;  3R5Z A;  3RH7 A;  2D37 A;  3DMB A;  1W3R A;  1G77 A;  2Q9K A;  4R82 A;  4HMU A;  2AQ6 A;  3ZOG A;  3IN6 A;  4XHY A;  2FUR A;  2R6V A;  3SWJ A;  4HMT A;  4Y9I A;  2QCK A;  1W9A A;  3K88 A;  3HY8 A;  2R0X A;  3BNK A;  2ED4 A;  3KYF A;  3AWH A;  3ZOF A;  1FLM A;  5BNC A;  3GAS A;  1RFE A;  3CP3 A;  1DNL A;  3F7E A;  2HQ9 A;  1I0R A;  2IAB A;  3VY2 A;  1USC A;  1VL7 A;  1RZ0 A;  3NFW A;  3CB0 A;  3DNH A;  3U0I A;  3ZOD A;  1XXO A;  2IG6 A;  1G76 A;  2OU5 A;  5CHO A;  2RDE A;  2D36 A;  2FG9 A;  3K87 A;  5CHE C;  1TY9 A;  1YLN A;  3U5W A;  1AXJ A;  2FHQ A;  3H96 A;  3PFT A;  2ARZ A;  2HHZ A;  4HX6 A;  1WLI A;  3B5M A;  1EJE A;  4QVB A;  3K86 A;  1WGB A;  3HMZ A;  2VPA A;  2I02 A;  2NR4 A;  3R5Y A;  1USF A;  3A20 A;  3E4V A;  1NRG A;  3R5W A;  3A6R A;  1G78 A;  3ZOH A;  2A2J A;  1XHN A;  1G79 A;  1I0S A;  2QEA A;  3BA3 A;  2E83 A;  4YWN A;  3AMF A;  4N7R C;  3EC6 A;  4Z85 A;  1W3O A;  2OL5 A;  2X1J A;  3TGV A;  3VYA A;  2GJG A;  4YBN A;  3BPK A;  2IML A;  3U35 A;  3ZOE A;  1JNW A;  3VY5 A;  3FGE A;  4F07 A;  3KYG A;  1Y30 A;  3R5R A;  4XJ2 A;  3FKH A;  2D5M A;  4ZKY A; 
#chains in the Genus database with same CATH topology
 1W3P A;  1T9M A;  2D38 A;  2K4Q A;  2X1K A;  2ECU A;  4HMV A;  5JAB A;  4L82 A;  2ASF A;  1W3Q A;  2P5Z X;  2HTI A;  2HTD A;  3DB0 A;  3U34 A;  4HMW A;  4HMS A;  1WLK A;  2I51 A;  3R5L A;  1CI0 A;  1YOA A;  3R5P A;  1Y12 A;  4HMX A;  2RE7 A;  3A6Q A;  4IRA A;  2PTF A;  1WV4 A;  2HQ7 A;  5ESC A;  3ZOC A;  2ECR A;  1RZ1 A;  3R5Z A;  3RH7 A;  2D37 A;  3DMB A;  1W3R A;  1G77 A;  2Q9K A;  4R82 A;  4HMU A;  2AQ6 A;  4MTK A;  3ZOG A;  3IN6 A;  4W64 A;  4XHY A;  2FUR A;  2R6V A;  3SWJ A;  4HMT A;  4Y9I A;  2QCK A;  1W9A A;  3K88 A;  3HY8 A;  2R0X A;  3BNK A;  2ED4 A;  3KYF A;  3AWH A;  2GUJ A;  3ZOF A;  1FLM A;  5BNC A;  3GAS A;  3HE1 A;  1RFE A;  3EAA A;  3CP3 A;  1DNL A;  3F7E A;  2HQ9 A;  1I0R A;  2IAB A;  3VY2 A;  1USC A;  1VL7 A;  1RZ0 A;  3NFW A;  3CB0 A;  3DNH A;  3U0I A;  3ZOD A;  1XXO A;  4UHV A;  2IG6 A;  1G76 A;  2OU5 A;  5CHO A;  2RDE A;  2D36 A;  2FG9 A;  3K87 A;  5CHE C;  1TY9 A;  1YLN A;  3U5W A;  1AXJ A;  2FHQ A;  3H96 A;  3PFT A;  4HKH A;  2ARZ A;  2HHZ A;  4HX6 A;  1WLI A;  3B5M A;  1EJE A;  4QVB A;  3K86 A;  2L1T A;  1WGB A;  3HMZ A;  3V4H A;  2VPA A;  2I02 A;  2NR4 A;  3R5Y A;  1USF A;  3A20 A;  3E4V A;  1NRG A;  3R5W A;  3A6R A;  4TV4 A;  1G78 A;  3ZOH A;  2A2J A;  1XHN A;  1G79 A;  1I0S A;  2QEA A;  3BA3 A;  2E83 A;  4YWN A;  3AMF A;  4N7R C;  3EC6 A;  4Z85 A;  1W3O A;  2OL5 A;  2X1J A;  3TGV A;  3VYA A;  2GJG A;  4YBN A;  3BPK A;  2IML A;  3U35 A;  3ZOE A;  1JNW A;  3VY5 A;  3FGE A;  4F07 A;  3KYG A;  1Y30 A;  3R5R A;  4XJ2 A;  3FKH A;  2D5M A;  4ZKY A; 
#chains in the Genus database with same CATH homology
 1W3P A;  1T9M A;  2D38 A;  2X1K A;  2ECU A;  4HMV A;  5JAB A;  4L82 A;  2ASF A;  1W3Q A;  2HTI A;  2HTD A;  3DB0 A;  3U34 A;  4HMW A;  4HMS A;  1WLK A;  2I51 A;  3R5L A;  1CI0 A;  1YOA A;  3R5P A;  4HMX A;  2RE7 A;  3A6Q A;  4IRA A;  2PTF A;  1WV4 A;  2HQ7 A;  5ESC A;  3ZOC A;  2ECR A;  1RZ1 A;  3R5Z A;  3RH7 A;  2D37 A;  3DMB A;  1W3R A;  1G77 A;  2Q9K A;  4R82 A;  4HMU A;  2AQ6 A;  3ZOG A;  3IN6 A;  4XHY A;  2FUR A;  2R6V A;  3SWJ A;  4HMT A;  4Y9I A;  2QCK A;  1W9A A;  3K88 A;  3HY8 A;  2R0X A;  3BNK A;  2ED4 A;  3KYF A;  3AWH A;  3ZOF A;  1FLM A;  5BNC A;  3GAS A;  1RFE A;  3CP3 A;  1DNL A;  3F7E A;  2HQ9 A;  1I0R A;  2IAB A;  3VY2 A;  1USC A;  1VL7 A;  1RZ0 A;  3NFW A;  3CB0 A;  3DNH A;  3U0I A;  3ZOD A;  1XXO A;  2IG6 A;  1G76 A;  2OU5 A;  5CHO A;  2RDE A;  2D36 A;  2FG9 A;  3K87 A;  5CHE C;  1TY9 A;  1YLN A;  3U5W A;  1AXJ A;  2FHQ A;  3H96 A;  3PFT A;  2ARZ A;  2HHZ A;  4HX6 A;  1WLI A;  3B5M A;  1EJE A;  4QVB A;  3K86 A;  1WGB A;  3HMZ A;  2VPA A;  2I02 A;  2NR4 A;  3R5Y A;  1USF A;  3A20 A;  3E4V A;  1NRG A;  3R5W A;  3A6R A;  1G78 A;  3ZOH A;  2A2J A;  1XHN A;  1G79 A;  1I0S A;  2QEA A;  3BA3 A;  2E83 A;  4YWN A;  3AMF A;  4N7R C;  3EC6 A;  4Z85 A;  1W3O A;  2OL5 A;  2X1J A;  3TGV A;  3VYA A;  2GJG A;  4YBN A;  3BPK A;  2IML A;  3U35 A;  3ZOE A;  1JNW A;  3VY5 A;  3FGE A;  4F07 A;  3KYG A;  1Y30 A;  3R5R A;  4XJ2 A;  3FKH A;  2D5M A;  4ZKY A; 
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similar chains in the Genus database (?% sequence similarity)
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