2OL5A

Crystal structure of a protease synthase and sporulation negative regulatory protein pai 2 from bacillus stearothermophilus
Total Genus 36
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
189
structure length
183
Chain Sequence
DPDVAYQVIEENSFATLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLMLSGMNKGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-21)TI6 (111-114)TI3 (60-63)TVIII1 (57-60)EMPTYS1 (24-31)TI1 (45-48)S4 (50-56)S2 (34-41)TI'1 (31-34)S3 (43-44)TI7 (128-131)TI2 (56-59)TIV2 (62-65)TII1 (65-68)S5 (68-81)S7 (150-163)TI5 (83-86)S6 (94-108)3H1 (115-118)TIV5 (118-121)3H2 (121-125)3H3 (145-148)AH2 (172-184)TIV3 (88-91)TI4 (82-85)TI8 (167-170)Updating...
connected with : NaN
publication title Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.
pubmed doi rcsb
molecule keywords PAI 2 protein
molecule tags Transcription regulator
source organism Geobacillus stearothermophilus
total genus 36
structure length 183
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04299 FMN_bind_2 Putative FMN-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2ol5A00
3F7EA 2Q9KA 2VPAA 2D38A 2PTFA 4HMVA 2RDEA 1WV4A 1XHNA 3ZOEA 1NRGA 2ED4A 3VY5A 4HX6A 1WLIA 2OL5A 4HMTA 2IG6A 4N7RC 3FKHA 1W9AA 1TY9A 3R5YA 2QCKA 5BNCA 3B5MA 3BA3A 2X1KA 3GASA 4YBNA 4XJ2A 3TGVA 2IMLA 3BNKA 3DNHA 1WGBA 2FHQA 1W3PA 3K86A 4HMSA 1USCA 1G76A 3ZOFA 3A6QA 2I02A 3VY2A 1CI0A 5CHEC 1W3QA 3SWJA 3K87A 3R5LA 4QVBA 4XHYA 2E83A 3U35A 3R5ZA 2D5MA 2FURA 2QEAA 4HMUA 2GJGA 1I0RA 3AWHA 3FGEA 3DMBA 3E4VA 3EC6A 4F07A 1G79A 3RH7A 1VL7A 2HHZA 1USFA 2AQ6A 5ESCA 3ZOCA 2NR4A 3IN6A 2ECRA 1G77A 4HMXA 3VYAA 1WLKA 5JABA 2HQ7A 3U0IA 3HY8A 3CB0A 2HTDA 3KYGA 3HMZA 1EJEA 2X1JA 3H96A 1W3OA 4Z85A 4Y9IA 3A6RA 3AMFA 2ASFA 1XXOA 4HMWA 1DNLA 3A20A 4L82A 2IABA 2ECUA 2R6VA 1FLMA 1W3RA 4ZKYA 3R5WA 1RZ1A 3NFWA 3CP3A 3DB0A 3ZOGA 1RZ0A 3ZOHA 1JNWA 3R5PA 4YWNA 3KYFA 2D36A 2R0XA 2ARZA 1Y30A 1I0SA 2D37A 3PFTA 4IRAA 1YOAA 1YLNA 2RE7A 3K88A 3ZODA 2FG9A 2OU5A 4R82A 3R5RA 1RFEA 3U34A 3BPKA 2I51A 1AXJA 1G78A 1T9MA 2A2JA 2HQ9A 3U5WA 5CHOA 2HTIA
chains in the Genus database with same CATH superfamily
3EAAA 3F7EA 2Q9KA 2VPAA 3V4HA 2D38A 2PTFA 2K4QA 4HMVA 2RDEA 1WV4A 1XHNA 3ZOEA 1NRGA 2ED4A 3VY5A 4HX6A 1WLIA 2OL5A 4HMTA 2IG6A 4N7RC 3FKHA 1W9AA 1TY9A 3R5YA 2QCKA 5BNCA 3B5MA 3BA3A 2X1KA 3GASA 4YBNA 4XJ2A 3TGVA 2IMLA 3BNKA 3DNHA 1WGBA 2FHQA 1W3PA 3K86A 4HMSA 1USCA 1G76A 3ZOFA 4UHVA 3A6QA 2I02A 3HE1A 3VY2A 1CI0A 5CHEC 1W3QA 3SWJA 3K87A 3R5LA 4QVBA 4XHYA 2E83A 3U35A 3R5ZA 2D5MA 2FURA 2QEAA 4HMUA 2GJGA 1I0RA 3AWHA 3FGEA 3DMBA 3E4VA 3EC6A 4F07A 1G79A 3RH7A 4HKHA 1VL7A 2HHZA 1USFA 2AQ6A 5ESCA 3ZOCA 2NR4A 3IN6A 2ECRA 1G77A 4HMXA 4W64A 1WLKA 3VYAA 5JABA 2HQ7A 3U0IA 3HY8A 3CB0A 2HTDA 2P5ZX 3KYGA 3HMZA 1EJEA 2X1JA 2L1TA 3H96A 1W3OA 4Z85A 4Y9IA 3A6RA 3AMFA 2ASFA 1XXOA 4HMWA 1DNLA 3A20A 1Y12A 4L82A 2IABA 2GUJA 2ECUA 2R6VA 1FLMA 1W3RA 4ZKYA 3R5WA 1RZ1A 3NFWA 3CP3A 3DB0A 3ZOGA 1RZ0A 3ZOHA 1JNWA 3R5PA 4YWNA 3KYFA 2D36A 2R0XA 4MTKA 2ARZA 1Y30A 1I0SA 2D37A 3PFTA 4IRAA 1YOAA 1YLNA 2RE7A 3K88A 3ZODA 2FG9A 2OU5A 4R82A 3R5RA 1RFEA 3U34A 3BPKA 2I51A 1AXJA 1G78A 4TV4A 1T9MA 2A2JA 2HQ9A 3U5WA 5CHOA 2HTIA
chains in the Genus database with same CATH topology
3F7EA 2Q9KA 2VPAA 2D38A 2PTFA 4HMVA 2RDEA 1WV4A 1XHNA 3ZOEA 1NRGA 2ED4A 3VY5A 4HX6A 1WLIA 2OL5A 4HMTA 2IG6A 4N7RC 3FKHA 1W9AA 1TY9A 3R5YA 2QCKA 5BNCA 3B5MA 3BA3A 2X1KA 3GASA 4YBNA 4XJ2A 3TGVA 2IMLA 3BNKA 3DNHA 1WGBA 2FHQA 1W3PA 3K86A 4HMSA 1USCA 1G76A 3ZOFA 3A6QA 2I02A 3VY2A 1CI0A 5CHEC 1W3QA 3SWJA 3K87A 3R5LA 4QVBA 4XHYA 2E83A 3U35A 3R5ZA 2D5MA 2FURA 2QEAA 4HMUA 2GJGA 1I0RA 3AWHA 3FGEA 3DMBA 3E4VA 3EC6A 4F07A 1G79A 3RH7A 1VL7A 2HHZA 1USFA 2AQ6A 5ESCA 3ZOCA 2NR4A 3IN6A 2ECRA 1G77A 4HMXA 3VYAA 1WLKA 5JABA 2HQ7A 3U0IA 3HY8A 3CB0A 2HTDA 3KYGA 3HMZA 1EJEA 2X1JA 3H96A 1W3OA 4Z85A 4Y9IA 3A6RA 3AMFA 2ASFA 1XXOA 4HMWA 1DNLA 3A20A 4L82A 2IABA 2ECUA 2R6VA 1FLMA 1W3RA 4ZKYA 3R5WA 1RZ1A 3NFWA 3CP3A 3DB0A 3ZOGA 1RZ0A 3ZOHA 1JNWA 3R5PA 4YWNA 3KYFA 2D36A 2R0XA 2ARZA 1Y30A 1I0SA 2D37A 3PFTA 4IRAA 1YOAA 1YLNA 2RE7A 3K88A 3ZODA 2FG9A 2OU5A 4R82A 3R5RA 1RFEA 3U34A 3BPKA 2I51A 1AXJA 1G78A 1T9MA 2A2JA 2HQ9A 3U5WA 5CHOA 2HTIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F7E A;  2Q9K A;  2VPA A;  2D38 A;  2PTF A;  4HMV A;  2RDE A;  1WV4 A;  1XHN A;  3ZOE A;  1NRG A;  2ED4 A;  3VY5 A;  4HX6 A;  1WLI A;  2OL5 A;  4HMT A;  2IG6 A;  4N7R C;  3FKH A;  1W9A A;  1TY9 A;  3R5Y A;  2QCK A;  5BNC A;  3B5M A;  3BA3 A;  2X1K A;  3GAS A;  4YBN A;  4XJ2 A;  3TGV A;  2IML A;  3BNK A;  3DNH A;  1WGB A;  2FHQ A;  1W3P A;  3K86 A;  4HMS A;  1USC A;  1G76 A;  3ZOF A;  3A6Q A;  2I02 A;  3VY2 A;  1CI0 A;  5CHE C;  1W3Q A;  3SWJ A;  3K87 A;  3R5L A;  4QVB A;  4XHY A;  2E83 A;  3U35 A;  3R5Z A;  2D5M A;  2FUR A;  2QEA A;  4HMU A;  2GJG A;  1I0R A;  3AWH A;  3FGE A;  3DMB A;  3E4V A;  3EC6 A;  4F07 A;  1G79 A;  3RH7 A;  1VL7 A;  2HHZ A;  1USF A;  2AQ6 A;  5ESC A;  3ZOC A;  2NR4 A;  3IN6 A;  2ECR A;  1G77 A;  4HMX A;  3VYA A;  1WLK A;  5JAB A;  2HQ7 A;  3U0I A;  3HY8 A;  3CB0 A;  2HTD A;  3KYG A;  3HMZ A;  1EJE A;  2X1J A;  3H96 A;  1W3O A;  4Z85 A;  4Y9I A;  3A6R A;  3AMF A;  2ASF A;  1XXO A;  4HMW A;  1DNL A;  3A20 A;  4L82 A;  2IAB A;  2ECU A;  2R6V A;  1FLM A;  1W3R A;  4ZKY A;  3R5W A;  1RZ1 A;  3NFW A;  3CP3 A;  3DB0 A;  3ZOG A;  1RZ0 A;  3ZOH A;  1JNW A;  3R5P A;  4YWN A;  3KYF A;  2D36 A;  2R0X A;  2ARZ A;  1Y30 A;  1I0S A;  2D37 A;  3PFT A;  4IRA A;  1YOA A;  1YLN A;  2RE7 A;  3K88 A;  3ZOD A;  2FG9 A;  2OU5 A;  4R82 A;  3R5R A;  1RFE A;  3U34 A;  3BPK A;  2I51 A;  1AXJ A;  1G78 A;  1T9M A;  2A2J A;  2HQ9 A;  3U5W A;  5CHO A;  2HTI A; 
#chains in the Genus database with same CATH topology
 3EAA A;  3F7E A;  2Q9K A;  2VPA A;  3V4H A;  2D38 A;  2PTF A;  2K4Q A;  4HMV A;  2RDE A;  1WV4 A;  1XHN A;  3ZOE A;  1NRG A;  2ED4 A;  3VY5 A;  4HX6 A;  1WLI A;  2OL5 A;  4HMT A;  2IG6 A;  4N7R C;  3FKH A;  1W9A A;  1TY9 A;  3R5Y A;  2QCK A;  5BNC A;  3B5M A;  3BA3 A;  2X1K A;  3GAS A;  4YBN A;  4XJ2 A;  3TGV A;  2IML A;  3BNK A;  3DNH A;  1WGB A;  2FHQ A;  1W3P A;  3K86 A;  4HMS A;  1USC A;  1G76 A;  3ZOF A;  4UHV A;  3A6Q A;  2I02 A;  3HE1 A;  3VY2 A;  1CI0 A;  5CHE C;  1W3Q A;  3SWJ A;  3K87 A;  3R5L A;  4QVB A;  4XHY A;  2E83 A;  3U35 A;  3R5Z A;  2D5M A;  2FUR A;  2QEA A;  4HMU A;  2GJG A;  1I0R A;  3AWH A;  3FGE A;  3DMB A;  3E4V A;  3EC6 A;  4F07 A;  1G79 A;  3RH7 A;  4HKH A;  1VL7 A;  2HHZ A;  1USF A;  2AQ6 A;  5ESC A;  3ZOC A;  2NR4 A;  3IN6 A;  2ECR A;  1G77 A;  4HMX A;  4W64 A;  1WLK A;  3VYA A;  5JAB A;  2HQ7 A;  3U0I A;  3HY8 A;  3CB0 A;  2HTD A;  2P5Z X;  3KYG A;  3HMZ A;  1EJE A;  2X1J A;  2L1T A;  3H96 A;  1W3O A;  4Z85 A;  4Y9I A;  3A6R A;  3AMF A;  2ASF A;  1XXO A;  4HMW A;  1DNL A;  3A20 A;  1Y12 A;  4L82 A;  2IAB A;  2GUJ A;  2ECU A;  2R6V A;  1FLM A;  1W3R A;  4ZKY A;  3R5W A;  1RZ1 A;  3NFW A;  3CP3 A;  3DB0 A;  3ZOG A;  1RZ0 A;  3ZOH A;  1JNW A;  3R5P A;  4YWN A;  3KYF A;  2D36 A;  2R0X A;  4MTK A;  2ARZ A;  1Y30 A;  1I0S A;  2D37 A;  3PFT A;  4IRA A;  1YOA A;  1YLN A;  2RE7 A;  3K88 A;  3ZOD A;  2FG9 A;  2OU5 A;  4R82 A;  3R5R A;  1RFE A;  3U34 A;  3BPK A;  2I51 A;  1AXJ A;  1G78 A;  4TV4 A;  1T9M A;  2A2J A;  2HQ9 A;  3U5W A;  5CHO A;  2HTI A; 
#chains in the Genus database with same CATH homology
 3F7E A;  2Q9K A;  2VPA A;  2D38 A;  2PTF A;  4HMV A;  2RDE A;  1WV4 A;  1XHN A;  3ZOE A;  1NRG A;  2ED4 A;  3VY5 A;  4HX6 A;  1WLI A;  2OL5 A;  4HMT A;  2IG6 A;  4N7R C;  3FKH A;  1W9A A;  1TY9 A;  3R5Y A;  2QCK A;  5BNC A;  3B5M A;  3BA3 A;  2X1K A;  3GAS A;  4YBN A;  4XJ2 A;  3TGV A;  2IML A;  3BNK A;  3DNH A;  1WGB A;  2FHQ A;  1W3P A;  3K86 A;  4HMS A;  1USC A;  1G76 A;  3ZOF A;  3A6Q A;  2I02 A;  3VY2 A;  1CI0 A;  5CHE C;  1W3Q A;  3SWJ A;  3K87 A;  3R5L A;  4QVB A;  4XHY A;  2E83 A;  3U35 A;  3R5Z A;  2D5M A;  2FUR A;  2QEA A;  4HMU A;  2GJG A;  1I0R A;  3AWH A;  3FGE A;  3DMB A;  3E4V A;  3EC6 A;  4F07 A;  1G79 A;  3RH7 A;  1VL7 A;  2HHZ A;  1USF A;  2AQ6 A;  5ESC A;  3ZOC A;  2NR4 A;  3IN6 A;  2ECR A;  1G77 A;  4HMX A;  3VYA A;  1WLK A;  5JAB A;  2HQ7 A;  3U0I A;  3HY8 A;  3CB0 A;  2HTD A;  3KYG A;  3HMZ A;  1EJE A;  2X1J A;  3H96 A;  1W3O A;  4Z85 A;  4Y9I A;  3A6R A;  3AMF A;  2ASF A;  1XXO A;  4HMW A;  1DNL A;  3A20 A;  4L82 A;  2IAB A;  2ECU A;  2R6V A;  1FLM A;  1W3R A;  4ZKY A;  3R5W A;  1RZ1 A;  3NFW A;  3CP3 A;  3DB0 A;  3ZOG A;  1RZ0 A;  3ZOH A;  1JNW A;  3R5P A;  4YWN A;  3KYF A;  2D36 A;  2R0X A;  2ARZ A;  1Y30 A;  1I0S A;  2D37 A;  3PFT A;  4IRA A;  1YOA A;  1YLN A;  2RE7 A;  3K88 A;  3ZOD A;  2FG9 A;  2OU5 A;  4R82 A;  3R5R A;  1RFE A;  3U34 A;  3BPK A;  2I51 A;  1AXJ A;  1G78 A;  1T9M A;  2A2J A;  2HQ9 A;  3U5W A;  5CHO A;  2HTI A; 
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