2R6V | Genus

Total Genus 41

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	182
structure length	182
Chain Sequence	HHHENLYFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution rcsb
molecule keywords	Uncharacterized protein PH0856
molecule tags	Flavoprotein
source organism	Pyrococcus horikoshii
total genus	41
structure length	182
sequence length	182
ec nomenclature
pdb deposition date	2007-09-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	2r6vA01

1NRGA 3K86A 4Z85A 4HMTA 1G78A 2ED4A 1YOAA 2HQ7A 3AMFA 3FKHA 1W3QA 3H96A 4Y9IA 2ECUA 3ZOHA 1RZ1A 1Y30A 3DNHA 2OL5A 3U0IA 2IG6A 2RDEA 3K88A 1G77A 3R5PA 2IMLA 3VY5A 3ZOFA 2FG9A 2NR4A 2Q9KA 3FGEA 3ZOCA 3U5WA 2OU5A 1WLIA 3PFTA 4HMUA 1W3RA 3VY2A 3TGVA 3R5WA 3U34A 4ZKYA 2VPAA 1XXOA 5ESCA 1AXJA 2FHQA 1JNWA 2X1JA 3AWHA 3R5LA 4F07A 3R5RA 5BNCA 1EJEA 2ASFA 1RFEA 2R6VA 2D38A 1WV4A 1USCA 2I51A 3HMZA 4HMXA 1T9MA 4YWNA 2QCKA 2X1KA 3CP3A 3U35A 3A6QA 4HMVA 3BNKA 2PTFA 2E83A 1VL7A 5CHEC 3CB0A 3ZOGA 2D36A 4R82A 3EC6A 2HTDA 1I0SA 2RE7A 3RH7A 5CHOA 4QVBA 4XJ2A 3A20A 4YBNA 2FURA 2AQ6A 3BPKA 3GASA 3SWJA 3B5MA 3K87A 1USFA 2D37A 1TY9A 2A2JA 2HHZA 4HX6A 2HTIA 3KYGA 3E4VA 3NFWA 4HMWA 3HY8A 3A6RA 1WLKA 4IRAA 3BA3A 3IN6A 3F7EA 4XHYA 1XHNA 4N7RC 2QEAA 1RZ0A 2R0XA 2I02A 2HQ9A 1DNLA 1WGBA 2GJGA 2ARZA 1CI0A 1W9AA 3DB0A 1FLMA 1I0RA 2IABA 1W3OA 1G79A 5JABA 3R5ZA 3R5YA 1W3PA 3DMBA 3ZODA 4L82A 1G76A 3KYFA 4HMSA 2ECRA 3VYAA 1YLNA 3ZOEA 2D5MA
chains in the Genus database with same CATH superfamily

1NRGA 3K86A 4Z85A 4HMTA 1G78A 2ED4A 1YOAA 2HQ7A 3AMFA 3FKHA 1W3QA 3H96A 4Y9IA 2ECUA 3ZOHA 1RZ1A 1Y30A 3DNHA 2OL5A 2K4QA 3U0IA 2IG6A 2RDEA 3K88A 1G77A 3R5PA 2IMLA 3VY5A 3ZOFA 2FG9A 2NR4A 2Q9KA 3FGEA 3ZOCA 3U5WA 2OU5A 1WLIA 3PFTA 4HMUA 1W3RA 3VY2A 3TGVA 3R5WA 3HE1A 3U34A 4ZKYA 2VPAA 1XXOA 5ESCA 1AXJA 2FHQA 1JNWA 2X1JA 4TV4A 3AWHA 3R5LA 4F07A 3R5RA 4UHVA 5BNCA 1EJEA 2ASFA 1RFEA 2R6VA 2D38A 1WV4A 1USCA 2I51A 3HMZA 4HMXA 1T9MA 4YWNA 2QCKA 2X1KA 3CP3A 3U35A 3A6QA 4HMVA 1Y12A 3BNKA 2PTFA 2E83A 1VL7A 5CHEC 2P5ZX 3CB0A 3ZOGA 2D36A 4R82A 3EC6A 2HTDA 4MTKA 1I0SA 2RE7A 3RH7A 4HKHA 5CHOA 4QVBA 4XJ2A 3A20A 4YBNA 2GUJA 2FURA 3EAAA 2AQ6A 3BPKA 3GASA 3SWJA 3B5MA 3K87A 1USFA 2D37A 1TY9A 2A2JA 2HHZA 4HX6A 2HTIA 2L1TA 3E4VA 3KYGA 3NFWA 4HMWA 3HY8A 3A6RA 1WLKA 4IRAA 3BA3A 3IN6A 3F7EA 4XHYA 1XHNA 4N7RC 2QEAA 1RZ0A 2R0XA 2I02A 2HQ9A 1DNLA 1WGBA 2GJGA 2ARZA 1CI0A 1W9AA 3DB0A 1FLMA 1I0RA 2IABA 1W3OA 1G79A 4W64A 5JABA 3R5ZA 3R5YA 1W3PA 3DMBA 3ZODA 4L82A 3V4HA 1G76A 3KYFA 4HMSA 2ECRA 3VYAA 1YLNA 3ZOEA 2D5MA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NRG A;  3K86 A;  4Z85 A;  4HMT A;  1G78 A;  2ED4 A;  1YOA A;  2HQ7 A;  3AMF A;  3FKH A;  1W3Q A;  3H96 A;  4Y9I A;  2ECU A;  3ZOH A;  1RZ1 A;  1Y30 A;  3DNH A;  2OL5 A;  3U0I A;  2IG6 A;  2RDE A;  3K88 A;  1G77 A;  3R5P A;  2IML A;  3VY5 A;  3ZOF A;  2FG9 A;  2NR4 A;  2Q9K A;  3FGE A;  3ZOC A;  3U5W A;  2OU5 A;  1WLI A;  3PFT A;  4HMU A;  1W3R A;  3VY2 A;  3TGV A;  3R5W A;  3U34 A;  4ZKY A;  2VPA A;  1XXO A;  5ESC A;  1AXJ A;  2FHQ A;  1JNW A;  2X1J A;  3AWH A;  3R5L A;  4F07 A;  3R5R A;  5BNC A;  1EJE A;  2ASF A;  1RFE A;  2R6V A;  2D38 A;  1WV4 A;  1USC A;  2I51 A;  3HMZ A;  4HMX A;  1T9M A;  4YWN A;  2QCK A;  2X1K A;  3CP3 A;  3U35 A;  3A6Q A;  4HMV A;  3BNK A;  2PTF A;  2E83 A;  1VL7 A;  5CHE C;  3CB0 A;  3ZOG A;  2D36 A;  4R82 A;  3EC6 A;  2HTD A;  1I0S A;  2RE7 A;  3RH7 A;  5CHO A;  4QVB A;  4XJ2 A;  3A20 A;  4YBN A;  2FUR A;  2AQ6 A;  3BPK A;  3GAS A;  3SWJ A;  3B5M A;  3K87 A;  1USF A;  2D37 A;  1TY9 A;  2A2J A;  2HHZ A;  4HX6 A;  2HTI A;  3KYG A;  3E4V A;  3NFW A;  4HMW A;  3HY8 A;  3A6R A;  1WLK A;  4IRA A;  3BA3 A;  3IN6 A;  3F7E A;  4XHY A;  1XHN A;  4N7R C;  2QEA A;  1RZ0 A;  2R0X A;  2I02 A;  2HQ9 A;  1DNL A;  1WGB A;  2GJG A;  2ARZ A;  1CI0 A;  1W9A A;  3DB0 A;  1FLM A;  1I0R A;  2IAB A;  1W3O A;  1G79 A;  5JAB A;  3R5Z A;  3R5Y A;  1W3P A;  3DMB A;  3ZOD A;  4L82 A;  1G76 A;  3KYF A;  4HMS A;  2ECR A;  3VYA A;  1YLN A;  3ZOE A;  2D5M A; 
#chains in the Genus database with same CATH topology
 1NRG A;  3K86 A;  4Z85 A;  4HMT A;  1G78 A;  2ED4 A;  1YOA A;  2HQ7 A;  3AMF A;  3FKH A;  1W3Q A;  3H96 A;  4Y9I A;  2ECU A;  3ZOH A;  1RZ1 A;  1Y30 A;  3DNH A;  2OL5 A;  2K4Q A;  3U0I A;  2IG6 A;  2RDE A;  3K88 A;  1G77 A;  3R5P A;  2IML A;  3VY5 A;  3ZOF A;  2FG9 A;  2NR4 A;  2Q9K A;  3FGE A;  3ZOC A;  3U5W A;  2OU5 A;  1WLI A;  3PFT A;  4HMU A;  1W3R A;  3VY2 A;  3TGV A;  3R5W A;  3HE1 A;  3U34 A;  4ZKY A;  2VPA A;  1XXO A;  5ESC A;  1AXJ A;  2FHQ A;  1JNW A;  2X1J A;  4TV4 A;  3AWH A;  3R5L A;  4F07 A;  3R5R A;  4UHV A;  5BNC A;  1EJE A;  2ASF A;  1RFE A;  2R6V A;  2D38 A;  1WV4 A;  1USC A;  2I51 A;  3HMZ A;  4HMX A;  1T9M A;  4YWN A;  2QCK A;  2X1K A;  3CP3 A;  3U35 A;  3A6Q A;  4HMV A;  1Y12 A;  3BNK A;  2PTF A;  2E83 A;  1VL7 A;  5CHE C;  2P5Z X;  3CB0 A;  3ZOG A;  2D36 A;  4R82 A;  3EC6 A;  2HTD A;  4MTK A;  1I0S A;  2RE7 A;  3RH7 A;  4HKH A;  5CHO A;  4QVB A;  4XJ2 A;  3A20 A;  4YBN A;  2GUJ A;  2FUR A;  3EAA A;  2AQ6 A;  3BPK A;  3GAS A;  3SWJ A;  3B5M A;  3K87 A;  1USF A;  2D37 A;  1TY9 A;  2A2J A;  2HHZ A;  4HX6 A;  2HTI A;  2L1T A;  3E4V A;  3KYG A;  3NFW A;  4HMW A;  3HY8 A;  3A6R A;  1WLK A;  4IRA A;  3BA3 A;  3IN6 A;  3F7E A;  4XHY A;  1XHN A;  4N7R C;  2QEA A;  1RZ0 A;  2R0X A;  2I02 A;  2HQ9 A;  1DNL A;  1WGB A;  2GJG A;  2ARZ A;  1CI0 A;  1W9A A;  3DB0 A;  1FLM A;  1I0R A;  2IAB A;  1W3O A;  1G79 A;  4W64 A;  5JAB A;  3R5Z A;  3R5Y A;  1W3P A;  3DMB A;  3ZOD A;  4L82 A;  3V4H A;  1G76 A;  3KYF A;  4HMS A;  2ECR A;  3VYA A;  1YLN A;  3ZOE A;  2D5M A; 
#chains in the Genus database with same CATH homology
 1NRG A;  3K86 A;  4Z85 A;  4HMT A;  1G78 A;  2ED4 A;  1YOA A;  2HQ7 A;  3AMF A;  3FKH A;  1W3Q A;  3H96 A;  4Y9I A;  2ECU A;  3ZOH A;  1RZ1 A;  1Y30 A;  3DNH A;  2OL5 A;  3U0I A;  2IG6 A;  2RDE A;  3K88 A;  1G77 A;  3R5P A;  2IML A;  3VY5 A;  3ZOF A;  2FG9 A;  2NR4 A;  2Q9K A;  3FGE A;  3ZOC A;  3U5W A;  2OU5 A;  1WLI A;  3PFT A;  4HMU A;  1W3R A;  3VY2 A;  3TGV A;  3R5W A;  3U34 A;  4ZKY A;  2VPA A;  1XXO A;  5ESC A;  1AXJ A;  2FHQ A;  1JNW A;  2X1J A;  3AWH A;  3R5L A;  4F07 A;  3R5R A;  5BNC A;  1EJE A;  2ASF A;  1RFE A;  2R6V A;  2D38 A;  1WV4 A;  1USC A;  2I51 A;  3HMZ A;  4HMX A;  1T9M A;  4YWN A;  2QCK A;  2X1K A;  3CP3 A;  3U35 A;  3A6Q A;  4HMV A;  3BNK A;  2PTF A;  2E83 A;  1VL7 A;  5CHE C;  3CB0 A;  3ZOG A;  2D36 A;  4R82 A;  3EC6 A;  2HTD A;  1I0S A;  2RE7 A;  3RH7 A;  5CHO A;  4QVB A;  4XJ2 A;  3A20 A;  4YBN A;  2FUR A;  2AQ6 A;  3BPK A;  3GAS A;  3SWJ A;  3B5M A;  3K87 A;  1USF A;  2D37 A;  1TY9 A;  2A2J A;  2HHZ A;  4HX6 A;  2HTI A;  3KYG A;  3E4V A;  3NFW A;  4HMW A;  3HY8 A;  3A6R A;  1WLK A;  4IRA A;  3BA3 A;  3IN6 A;  3F7E A;  4XHY A;  1XHN A;  4N7R C;  2QEA A;  1RZ0 A;  2R0X A;  2I02 A;  2HQ9 A;  1DNL A;  1WGB A;  2GJG A;  2ARZ A;  1CI0 A;  1W9A A;  3DB0 A;  1FLM A;  1I0R A;  2IAB A;  1W3O A;  1G79 A;  5JAB A;  3R5Z A;  3R5Y A;  1W3P A;  3DMB A;  3ZOD A;  4L82 A;  1G76 A;  3KYF A;  4HMS A;  2ECR A;  3VYA A;  1YLN A;  3ZOE A;  2D5M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2R6VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations