2R6VA

Crystal structure of fmn-binding protein (np_142786.1) from pyrococcus horikoshii at 1.35 a resolution
Total Genus 41
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
182
structure length
182
Chain Sequence
HHHENLYFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (3-7)EMPTYAH1 (50-58)3H2 (20-22)TVIII2 (35-38)TI5 (157-160)S2 (31-35)AH2 (71-78)3H3 (68-70)TIV2 (28-31)S10 (160-163)S3 (40-45)TIV3 (36-39)TI1 (46-49)S8 (124-136)TI3 (104-107)S5 (93-95)TI2 (85-88)S6 (102-104)S7 (109-121)S9 (153-157)TIV6 (142-145)3H6 (148-150)S4 (60-65)3H4 (83-85)TIV4 (96-99)TI4 (141-144)3H5 (138-141)TII'1 (121-124)S1 (14-16)Updating...
connected with : NaN
publication title Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution
rcsb
molecule keywords Uncharacterized protein PH0856
molecule tags Flavoprotein
source organism Pyrococcus horikoshii
total genus 41
structure length 182
sequence length 182
ec nomenclature
pdb deposition date 2007-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2r6vA01
4XJ2A 2ECRA 3U35A 3BNKA 5ESCA 1G79A 3NFWA 2D5MA 1AXJA 2E83A 2OL5A 3IN6A 3ZODA 4XHYA 2NR4A 1Y30A 3H96A 4HMWA 4HMSA 5BNCA 3AMFA 1VL7A 3DNHA 3VYAA 3R5RA 3U34A 2HHZA 2ASFA 2R0XA 3EC6A 5CHEC 2D36A 1RZ1A 1JNWA 1W3QA 2FHQA 3R5YA 2I02A 3A6RA 3FGEA 3TGVA 2RDEA 2GJGA 1G76A 1USCA 1W3OA 3HMZA 3R5ZA 3E4VA 2RE7A 3AWHA 2QEAA 3GASA 3RH7A 4YWNA 1TY9A 3A20A 1G77A 3ZOGA 4HMTA 4F07A 2HTIA 5JABA 1WGBA 4YBNA 3SWJA 1WLKA 3KYGA 4IRAA 2D37A 1I0SA 1XHNA 2ED4A 3PFTA 1YLNA 2OU5A 3FKHA 2FURA 3R5LA 4N7RC 2HTDA 1RZ0A 1CI0A 3CP3A 2AQ6A 2IG6A 3ZOCA 3R5WA 4HX6A 2FG9A 1W3PA 2IMLA 4HMVA 4HMXA 4Y9IA 1I0RA 2X1KA 3U0IA 1WLIA 3ZOFA 5CHOA 3KYFA 3BA3A 3B5MA 3BPKA 3K88A 2X1JA 3R5PA 2VPAA 4HMUA 2D38A 1W9AA 1FLMA 1WV4A 3CB0A 3VY5A 2HQ7A 3DB0A 4QVBA 1G78A 1DNLA 1XXOA 2ECUA 3ZOEA 3K87A 2QCKA 2HQ9A 2Q9KA 1RFEA 2A2JA 3F7EA 1EJEA 1W3RA 3VY2A 1T9MA 3K86A 1USFA 4R82A 3A6QA 4L82A 2PTFA 3DMBA 2ARZA 2R6VA 3ZOHA 4ZKYA 3HY8A 4Z85A 1YOAA 1NRGA 2I51A 2IABA 3U5WA
chains in the Genus database with same CATH superfamily
2GUJA 2ECRA 4XJ2A 3U35A 3BNKA 5ESCA 3V4HA 1G79A 3NFWA 2D5MA 1AXJA 2E83A 2OL5A 3IN6A 3ZODA 4XHYA 2NR4A 1Y30A 3H96A 4HMWA 4HMSA 5BNCA 3AMFA 1VL7A 3DNHA 3VYAA 4TV4A 3R5RA 2P5ZX 3U34A 2HHZA 2ASFA 2R0XA 3EC6A 5CHEC 2D36A 1RZ1A 1JNWA 1W3QA 4HKHA 2FHQA 3R5YA 1Y12A 2I02A 3A6RA 3FGEA 3TGVA 2RDEA 2GJGA 1G76A 1USCA 1W3OA 3HMZA 3R5ZA 3E4VA 2RE7A 3AWHA 2QEAA 3GASA 3RH7A 4YWNA 1TY9A 3A20A 1G77A 3ZOGA 4HMTA 4F07A 2HTIA 5JABA 1WGBA 4YBNA 3SWJA 1WLKA 3KYGA 4IRAA 2D37A 1I0SA 1XHNA 2ED4A 4MTKA 4W64A 3PFTA 1YLNA 2OU5A 3FKHA 2FURA 3R5LA 4N7RC 3HE1A 2HTDA 1RZ0A 1CI0A 3CP3A 2AQ6A 2IG6A 3ZOCA 3R5WA 4HX6A 2FG9A 1W3PA 2IMLA 4HMVA 4HMXA 4Y9IA 1I0RA 2X1KA 3U0IA 2L1TA 1WLIA 3ZOFA 5CHOA 3KYFA 3BA3A 3B5MA 3BPKA 3K88A 2X1JA 3R5PA 2VPAA 4HMUA 2D38A 1W9AA 1FLMA 1WV4A 3CB0A 3VY5A 2HQ7A 3DB0A 4QVBA 1G78A 1DNLA 1XXOA 2ECUA 3ZOEA 3K87A 2QCKA 2HQ9A 2K4QA 3EAAA 2Q9KA 1RFEA 2A2JA 3F7EA 1EJEA 1W3RA 4UHVA 3VY2A 1T9MA 3K86A 1USFA 4R82A 3A6QA 4L82A 2PTFA 3DMBA 2ARZA 2R6VA 3ZOHA 4ZKYA 3HY8A 4Z85A 1YOAA 1NRGA 2I51A 2IABA 3U5WA
chains in the Genus database with same CATH topology
4XJ2A 2ECRA 3U35A 3BNKA 5ESCA 1G79A 3NFWA 2D5MA 1AXJA 2E83A 2OL5A 3IN6A 3ZODA 4XHYA 2NR4A 1Y30A 3H96A 4HMWA 4HMSA 5BNCA 3AMFA 1VL7A 3DNHA 3VYAA 3R5RA 3U34A 2HHZA 2ASFA 2R0XA 3EC6A 5CHEC 2D36A 1RZ1A 1JNWA 1W3QA 2FHQA 3R5YA 2I02A 3A6RA 3FGEA 3TGVA 2RDEA 2GJGA 1G76A 1USCA 1W3OA 3HMZA 3R5ZA 3E4VA 2RE7A 3AWHA 2QEAA 3GASA 3RH7A 4YWNA 1TY9A 3A20A 1G77A 3ZOGA 4HMTA 4F07A 2HTIA 5JABA 1WGBA 4YBNA 3SWJA 1WLKA 3KYGA 4IRAA 2D37A 1I0SA 1XHNA 2ED4A 3PFTA 1YLNA 2OU5A 3FKHA 2FURA 3R5LA 4N7RC 2HTDA 1RZ0A 1CI0A 3CP3A 2AQ6A 2IG6A 3ZOCA 3R5WA 4HX6A 2FG9A 1W3PA 2IMLA 4HMVA 4HMXA 4Y9IA 1I0RA 2X1KA 3U0IA 1WLIA 3ZOFA 5CHOA 3KYFA 3BA3A 3B5MA 3BPKA 3K88A 2X1JA 3R5PA 2VPAA 4HMUA 2D38A 1W9AA 1FLMA 1WV4A 3CB0A 3VY5A 2HQ7A 3DB0A 4QVBA 1G78A 1DNLA 1XXOA 2ECUA 3ZOEA 3K87A 2QCKA 2HQ9A 2Q9KA 1RFEA 2A2JA 3F7EA 1EJEA 1W3RA 3VY2A 1T9MA 3K86A 1USFA 4R82A 3A6QA 4L82A 2PTFA 3DMBA 2ARZA 2R6VA 3ZOHA 4ZKYA 3HY8A 4Z85A 1YOAA 1NRGA 2I51A 2IABA 3U5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XJ2 A;  2ECR A;  3U35 A;  3BNK A;  5ESC A;  1G79 A;  3NFW A;  2D5M A;  1AXJ A;  2E83 A;  2OL5 A;  3IN6 A;  3ZOD A;  4XHY A;  2NR4 A;  1Y30 A;  3H96 A;  4HMW A;  4HMS A;  5BNC A;  3AMF A;  1VL7 A;  3DNH A;  3VYA A;  3R5R A;  3U34 A;  2HHZ A;  2ASF A;  2R0X A;  3EC6 A;  5CHE C;  2D36 A;  1RZ1 A;  1JNW A;  1W3Q A;  2FHQ A;  3R5Y A;  2I02 A;  3A6R A;  3FGE A;  3TGV A;  2RDE A;  2GJG A;  1G76 A;  1USC A;  1W3O A;  3HMZ A;  3R5Z A;  3E4V A;  2RE7 A;  3AWH A;  2QEA A;  3GAS A;  3RH7 A;  4YWN A;  1TY9 A;  3A20 A;  1G77 A;  3ZOG A;  4HMT A;  4F07 A;  2HTI A;  5JAB A;  1WGB A;  4YBN A;  3SWJ A;  1WLK A;  3KYG A;  4IRA A;  2D37 A;  1I0S A;  1XHN A;  2ED4 A;  3PFT A;  1YLN A;  2OU5 A;  3FKH A;  2FUR A;  3R5L A;  4N7R C;  2HTD A;  1RZ0 A;  1CI0 A;  3CP3 A;  2AQ6 A;  2IG6 A;  3ZOC A;  3R5W A;  4HX6 A;  2FG9 A;  1W3P A;  2IML A;  4HMV A;  4HMX A;  4Y9I A;  1I0R A;  2X1K A;  3U0I A;  1WLI A;  3ZOF A;  5CHO A;  3KYF A;  3BA3 A;  3B5M A;  3BPK A;  3K88 A;  2X1J A;  3R5P A;  2VPA A;  4HMU A;  2D38 A;  1W9A A;  1FLM A;  1WV4 A;  3CB0 A;  3VY5 A;  2HQ7 A;  3DB0 A;  4QVB A;  1G78 A;  1DNL A;  1XXO A;  2ECU A;  3ZOE A;  3K87 A;  2QCK A;  2HQ9 A;  2Q9K A;  1RFE A;  2A2J A;  3F7E A;  1EJE A;  1W3R A;  3VY2 A;  1T9M A;  3K86 A;  1USF A;  4R82 A;  3A6Q A;  4L82 A;  2PTF A;  3DMB A;  2ARZ A;  2R6V A;  3ZOH A;  4ZKY A;  3HY8 A;  4Z85 A;  1YOA A;  1NRG A;  2I51 A;  2IAB A;  3U5W A; 
#chains in the Genus database with same CATH topology
 2GUJ A;  2ECR A;  4XJ2 A;  3U35 A;  3BNK A;  5ESC A;  3V4H A;  1G79 A;  3NFW A;  2D5M A;  1AXJ A;  2E83 A;  2OL5 A;  3IN6 A;  3ZOD A;  4XHY A;  2NR4 A;  1Y30 A;  3H96 A;  4HMW A;  4HMS A;  5BNC A;  3AMF A;  1VL7 A;  3DNH A;  3VYA A;  4TV4 A;  3R5R A;  2P5Z X;  3U34 A;  2HHZ A;  2ASF A;  2R0X A;  3EC6 A;  5CHE C;  2D36 A;  1RZ1 A;  1JNW A;  1W3Q A;  4HKH A;  2FHQ A;  3R5Y A;  1Y12 A;  2I02 A;  3A6R A;  3FGE A;  3TGV A;  2RDE A;  2GJG A;  1G76 A;  1USC A;  1W3O A;  3HMZ A;  3R5Z A;  3E4V A;  2RE7 A;  3AWH A;  2QEA A;  3GAS A;  3RH7 A;  4YWN A;  1TY9 A;  3A20 A;  1G77 A;  3ZOG A;  4HMT A;  4F07 A;  2HTI A;  5JAB A;  1WGB A;  4YBN A;  3SWJ A;  1WLK A;  3KYG A;  4IRA A;  2D37 A;  1I0S A;  1XHN A;  2ED4 A;  4MTK A;  4W64 A;  3PFT A;  1YLN A;  2OU5 A;  3FKH A;  2FUR A;  3R5L A;  4N7R C;  3HE1 A;  2HTD A;  1RZ0 A;  1CI0 A;  3CP3 A;  2AQ6 A;  2IG6 A;  3ZOC A;  3R5W A;  4HX6 A;  2FG9 A;  1W3P A;  2IML A;  4HMV A;  4HMX A;  4Y9I A;  1I0R A;  2X1K A;  3U0I A;  2L1T A;  1WLI A;  3ZOF A;  5CHO A;  3KYF A;  3BA3 A;  3B5M A;  3BPK A;  3K88 A;  2X1J A;  3R5P A;  2VPA A;  4HMU A;  2D38 A;  1W9A A;  1FLM A;  1WV4 A;  3CB0 A;  3VY5 A;  2HQ7 A;  3DB0 A;  4QVB A;  1G78 A;  1DNL A;  1XXO A;  2ECU A;  3ZOE A;  3K87 A;  2QCK A;  2HQ9 A;  2K4Q A;  3EAA A;  2Q9K A;  1RFE A;  2A2J A;  3F7E A;  1EJE A;  1W3R A;  4UHV A;  3VY2 A;  1T9M A;  3K86 A;  1USF A;  4R82 A;  3A6Q A;  4L82 A;  2PTF A;  3DMB A;  2ARZ A;  2R6V A;  3ZOH A;  4ZKY A;  3HY8 A;  4Z85 A;  1YOA A;  1NRG A;  2I51 A;  2IAB A;  3U5W A; 
#chains in the Genus database with same CATH homology
 4XJ2 A;  2ECR A;  3U35 A;  3BNK A;  5ESC A;  1G79 A;  3NFW A;  2D5M A;  1AXJ A;  2E83 A;  2OL5 A;  3IN6 A;  3ZOD A;  4XHY A;  2NR4 A;  1Y30 A;  3H96 A;  4HMW A;  4HMS A;  5BNC A;  3AMF A;  1VL7 A;  3DNH A;  3VYA A;  3R5R A;  3U34 A;  2HHZ A;  2ASF A;  2R0X A;  3EC6 A;  5CHE C;  2D36 A;  1RZ1 A;  1JNW A;  1W3Q A;  2FHQ A;  3R5Y A;  2I02 A;  3A6R A;  3FGE A;  3TGV A;  2RDE A;  2GJG A;  1G76 A;  1USC A;  1W3O A;  3HMZ A;  3R5Z A;  3E4V A;  2RE7 A;  3AWH A;  2QEA A;  3GAS A;  3RH7 A;  4YWN A;  1TY9 A;  3A20 A;  1G77 A;  3ZOG A;  4HMT A;  4F07 A;  2HTI A;  5JAB A;  1WGB A;  4YBN A;  3SWJ A;  1WLK A;  3KYG A;  4IRA A;  2D37 A;  1I0S A;  1XHN A;  2ED4 A;  3PFT A;  1YLN A;  2OU5 A;  3FKH A;  2FUR A;  3R5L A;  4N7R C;  2HTD A;  1RZ0 A;  1CI0 A;  3CP3 A;  2AQ6 A;  2IG6 A;  3ZOC A;  3R5W A;  4HX6 A;  2FG9 A;  1W3P A;  2IML A;  4HMV A;  4HMX A;  4Y9I A;  1I0R A;  2X1K A;  3U0I A;  1WLI A;  3ZOF A;  5CHO A;  3KYF A;  3BA3 A;  3B5M A;  3BPK A;  3K88 A;  2X1J A;  3R5P A;  2VPA A;  4HMU A;  2D38 A;  1W9A A;  1FLM A;  1WV4 A;  3CB0 A;  3VY5 A;  2HQ7 A;  3DB0 A;  4QVB A;  1G78 A;  1DNL A;  1XXO A;  2ECU A;  3ZOE A;  3K87 A;  2QCK A;  2HQ9 A;  2Q9K A;  1RFE A;  2A2J A;  3F7E A;  1EJE A;  1W3R A;  3VY2 A;  1T9M A;  3K86 A;  1USF A;  4R82 A;  3A6Q A;  4L82 A;  2PTF A;  3DMB A;  2ARZ A;  2R6V A;  3ZOH A;  4ZKY A;  3HY8 A;  4Z85 A;  1YOA A;  1NRG A;  2I51 A;  2IAB A;  3U5W A; 
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