2R6V | Genus

Total Genus 41

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	182
structure length	182
Chain Sequence	HHHENLYFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution rcsb
molecule keywords	Uncharacterized protein PH0856
molecule tags	Flavoprotein
source organism	Pyrococcus horikoshii
total genus	41
structure length	182
sequence length	182
ec nomenclature
pdb deposition date	2007-09-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	2r6vA01

1W9AA 1USCA 3DB0A 1TY9A 3BNKA 1FLMA 2RE7A 4HMTA 4Y9IA 4HMSA 3K87A 2VPAA 3SWJA 1YOAA 3TGVA 1W3QA 2E83A 3BA3A 3FGEA 2GJGA 4R82A 3ZOGA 2D37A 2A2JA 3HY8A 2OL5A 2IABA 3F7EA 1G76A 3R5LA 1WLKA 3R5RA 3R5ZA 3R5WA 3KYFA 3B5MA 2IG6A 3NFWA 3VY2A 2IMLA 5BNCA 2ASFA 1G77A 1G78A 1RFEA 3A6QA 1NRGA 2X1KA 1RZ0A 2ECRA 3EC6A 1WV4A 4HX6A 4XJ2A 1XXOA 2HHZA 2ECUA 5ESCA 4F07A 1DNLA 2OU5A 2HTDA 4HMXA 3U35A 3GASA 4YWNA 1XHNA 2D36A 3CP3A 5CHEC 3R5YA 2FG9A 4IRAA 3ZOCA 3AMFA 2RDEA 3A6RA 2ARZA 4YBNA 5JABA 3U0IA 3ZOHA 2ED4A 1AXJA 3K88A 3KYGA 3U34A 3E4VA 4QVBA 1VL7A 2X1JA 3ZODA 2PTFA 1W3PA 1W3OA 2R0XA 5CHOA 2HTIA 3CB0A 1W3RA 1WLIA 1JNWA 3ZOFA 2D5MA 2D38A 1RZ1A 2AQ6A 3ZOEA 3AWHA 1I0RA 3R5PA 3PFTA 1WGBA 2FHQA 2I02A 4Z85A 3A20A 3VY5A 1EJEA 2I51A 3HMZA 2Q9KA 3DNHA 3U5WA 1Y30A 2NR4A 1G79A 2QCKA 3IN6A 3K86A 3H96A 1CI0A 2QEAA 1I0SA 3BPKA 4N7RC 3DMBA 4HMUA 1YLNA 4L82A 4HMVA 4HMWA 2R6VA 1USFA 4ZKYA 2HQ7A 2HQ9A 3VYAA 4XHYA 2FURA 3FKHA 3RH7A 1T9MA
chains in the Genus database with same CATH superfamily

1W9AA 1USCA 3DB0A 4MTKA 1TY9A 3BNKA 1FLMA 2RE7A 4HMTA 4Y9IA 4HMSA 3K87A 2VPAA 3SWJA 1YOAA 3TGVA 1W3QA 2E83A 3BA3A 3FGEA 2GJGA 4R82A 3ZOGA 2D37A 2A2JA 3HY8A 2OL5A 2IABA 3F7EA 1G76A 3R5LA 1WLKA 3R5RA 3R5ZA 3R5WA 3KYFA 3B5MA 2IG6A 3NFWA 3HE1A 3VY2A 2IMLA 5BNCA 2ASFA 1G77A 1G78A 1RFEA 3EAAA 3A6QA 1NRGA 2X1KA 1RZ0A 2ECRA 3EC6A 1WV4A 4HX6A 4XJ2A 4W64A 1XXOA 2HHZA 2ECUA 5ESCA 4F07A 2L1TA 2GUJA 1DNLA 2OU5A 2HTDA 4HMXA 3U35A 3V4HA 3GASA 4YWNA 1XHNA 2D36A 3CP3A 1Y12A 5CHEC 2K4QA 3R5YA 2FG9A 4IRAA 3ZOCA 3AMFA 2RDEA 3A6RA 2ARZA 4YBNA 5JABA 3U0IA 3ZOHA 2ED4A 1AXJA 3K88A 3KYGA 3U34A 3E4VA 4QVBA 1VL7A 2X1JA 3ZODA 2PTFA 1W3PA 1W3OA 2R0XA 5CHOA 2HTIA 3CB0A 1W3RA 1WLIA 1JNWA 3ZOFA 2D5MA 4TV4A 2D38A 1RZ1A 2AQ6A 4UHVA 3ZOEA 3AWHA 1I0RA 3R5PA 3PFTA 1WGBA 2FHQA 2I02A 4Z85A 3A20A 3VY5A 1EJEA 2I51A 3HMZA 4HKHA 2Q9KA 3DNHA 3U5WA 1Y30A 2NR4A 1G79A 2QCKA 3IN6A 3K86A 3H96A 1CI0A 2QEAA 1I0SA 3BPKA 4N7RC 3DMBA 4HMUA 1YLNA 4L82A 2P5ZX 4HMVA 4HMWA 2R6VA 1USFA 4ZKYA 2HQ7A 2HQ9A 3VYAA 4XHYA 2FURA 3FKHA 3RH7A 1T9MA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1W9A A;  1USC A;  3DB0 A;  1TY9 A;  3BNK A;  1FLM A;  2RE7 A;  4HMT A;  4Y9I A;  4HMS A;  3K87 A;  2VPA A;  3SWJ A;  1YOA A;  3TGV A;  1W3Q A;  2E83 A;  3BA3 A;  3FGE A;  2GJG A;  4R82 A;  3ZOG A;  2D37 A;  2A2J A;  3HY8 A;  2OL5 A;  2IAB A;  3F7E A;  1G76 A;  3R5L A;  1WLK A;  3R5R A;  3R5Z A;  3R5W A;  3KYF A;  3B5M A;  2IG6 A;  3NFW A;  3VY2 A;  2IML A;  5BNC A;  2ASF A;  1G77 A;  1G78 A;  1RFE A;  3A6Q A;  1NRG A;  2X1K A;  1RZ0 A;  2ECR A;  3EC6 A;  1WV4 A;  4HX6 A;  4XJ2 A;  1XXO A;  2HHZ A;  2ECU A;  5ESC A;  4F07 A;  1DNL A;  2OU5 A;  2HTD A;  4HMX A;  3U35 A;  3GAS A;  4YWN A;  1XHN A;  2D36 A;  3CP3 A;  5CHE C;  3R5Y A;  2FG9 A;  4IRA A;  3ZOC A;  3AMF A;  2RDE A;  3A6R A;  2ARZ A;  4YBN A;  5JAB A;  3U0I A;  3ZOH A;  2ED4 A;  1AXJ A;  3K88 A;  3KYG A;  3U34 A;  3E4V A;  4QVB A;  1VL7 A;  2X1J A;  3ZOD A;  2PTF A;  1W3P A;  1W3O A;  2R0X A;  5CHO A;  2HTI A;  3CB0 A;  1W3R A;  1WLI A;  1JNW A;  3ZOF A;  2D5M A;  2D38 A;  1RZ1 A;  2AQ6 A;  3ZOE A;  3AWH A;  1I0R A;  3R5P A;  3PFT A;  1WGB A;  2FHQ A;  2I02 A;  4Z85 A;  3A20 A;  3VY5 A;  1EJE A;  2I51 A;  3HMZ A;  2Q9K A;  3DNH A;  3U5W A;  1Y30 A;  2NR4 A;  1G79 A;  2QCK A;  3IN6 A;  3K86 A;  3H96 A;  1CI0 A;  2QEA A;  1I0S A;  3BPK A;  4N7R C;  3DMB A;  4HMU A;  1YLN A;  4L82 A;  4HMV A;  4HMW A;  2R6V A;  1USF A;  4ZKY A;  2HQ7 A;  2HQ9 A;  3VYA A;  4XHY A;  2FUR A;  3FKH A;  3RH7 A;  1T9M A; 
#chains in the Genus database with same CATH topology
 1W9A A;  1USC A;  3DB0 A;  4MTK A;  1TY9 A;  3BNK A;  1FLM A;  2RE7 A;  4HMT A;  4Y9I A;  4HMS A;  3K87 A;  2VPA A;  3SWJ A;  1YOA A;  3TGV A;  1W3Q A;  2E83 A;  3BA3 A;  3FGE A;  2GJG A;  4R82 A;  3ZOG A;  2D37 A;  2A2J A;  3HY8 A;  2OL5 A;  2IAB A;  3F7E A;  1G76 A;  3R5L A;  1WLK A;  3R5R A;  3R5Z A;  3R5W A;  3KYF A;  3B5M A;  2IG6 A;  3NFW A;  3HE1 A;  3VY2 A;  2IML A;  5BNC A;  2ASF A;  1G77 A;  1G78 A;  1RFE A;  3EAA A;  3A6Q A;  1NRG A;  2X1K A;  1RZ0 A;  2ECR A;  3EC6 A;  1WV4 A;  4HX6 A;  4XJ2 A;  4W64 A;  1XXO A;  2HHZ A;  2ECU A;  5ESC A;  4F07 A;  2L1T A;  2GUJ A;  1DNL A;  2OU5 A;  2HTD A;  4HMX A;  3U35 A;  3V4H A;  3GAS A;  4YWN A;  1XHN A;  2D36 A;  3CP3 A;  1Y12 A;  5CHE C;  2K4Q A;  3R5Y A;  2FG9 A;  4IRA A;  3ZOC A;  3AMF A;  2RDE A;  3A6R A;  2ARZ A;  4YBN A;  5JAB A;  3U0I A;  3ZOH A;  2ED4 A;  1AXJ A;  3K88 A;  3KYG A;  3U34 A;  3E4V A;  4QVB A;  1VL7 A;  2X1J A;  3ZOD A;  2PTF A;  1W3P A;  1W3O A;  2R0X A;  5CHO A;  2HTI A;  3CB0 A;  1W3R A;  1WLI A;  1JNW A;  3ZOF A;  2D5M A;  4TV4 A;  2D38 A;  1RZ1 A;  2AQ6 A;  4UHV A;  3ZOE A;  3AWH A;  1I0R A;  3R5P A;  3PFT A;  1WGB A;  2FHQ A;  2I02 A;  4Z85 A;  3A20 A;  3VY5 A;  1EJE A;  2I51 A;  3HMZ A;  4HKH A;  2Q9K A;  3DNH A;  3U5W A;  1Y30 A;  2NR4 A;  1G79 A;  2QCK A;  3IN6 A;  3K86 A;  3H96 A;  1CI0 A;  2QEA A;  1I0S A;  3BPK A;  4N7R C;  3DMB A;  4HMU A;  1YLN A;  4L82 A;  2P5Z X;  4HMV A;  4HMW A;  2R6V A;  1USF A;  4ZKY A;  2HQ7 A;  2HQ9 A;  3VYA A;  4XHY A;  2FUR A;  3FKH A;  3RH7 A;  1T9M A; 
#chains in the Genus database with same CATH homology
 1W9A A;  1USC A;  3DB0 A;  1TY9 A;  3BNK A;  1FLM A;  2RE7 A;  4HMT A;  4Y9I A;  4HMS A;  3K87 A;  2VPA A;  3SWJ A;  1YOA A;  3TGV A;  1W3Q A;  2E83 A;  3BA3 A;  3FGE A;  2GJG A;  4R82 A;  3ZOG A;  2D37 A;  2A2J A;  3HY8 A;  2OL5 A;  2IAB A;  3F7E A;  1G76 A;  3R5L A;  1WLK A;  3R5R A;  3R5Z A;  3R5W A;  3KYF A;  3B5M A;  2IG6 A;  3NFW A;  3VY2 A;  2IML A;  5BNC A;  2ASF A;  1G77 A;  1G78 A;  1RFE A;  3A6Q A;  1NRG A;  2X1K A;  1RZ0 A;  2ECR A;  3EC6 A;  1WV4 A;  4HX6 A;  4XJ2 A;  1XXO A;  2HHZ A;  2ECU A;  5ESC A;  4F07 A;  1DNL A;  2OU5 A;  2HTD A;  4HMX A;  3U35 A;  3GAS A;  4YWN A;  1XHN A;  2D36 A;  3CP3 A;  5CHE C;  3R5Y A;  2FG9 A;  4IRA A;  3ZOC A;  3AMF A;  2RDE A;  3A6R A;  2ARZ A;  4YBN A;  5JAB A;  3U0I A;  3ZOH A;  2ED4 A;  1AXJ A;  3K88 A;  3KYG A;  3U34 A;  3E4V A;  4QVB A;  1VL7 A;  2X1J A;  3ZOD A;  2PTF A;  1W3P A;  1W3O A;  2R0X A;  5CHO A;  2HTI A;  3CB0 A;  1W3R A;  1WLI A;  1JNW A;  3ZOF A;  2D5M A;  2D38 A;  1RZ1 A;  2AQ6 A;  3ZOE A;  3AWH A;  1I0R A;  3R5P A;  3PFT A;  1WGB A;  2FHQ A;  2I02 A;  4Z85 A;  3A20 A;  3VY5 A;  1EJE A;  2I51 A;  3HMZ A;  2Q9K A;  3DNH A;  3U5W A;  1Y30 A;  2NR4 A;  1G79 A;  2QCK A;  3IN6 A;  3K86 A;  3H96 A;  1CI0 A;  2QEA A;  1I0S A;  3BPK A;  4N7R C;  3DMB A;  4HMU A;  1YLN A;  4L82 A;  4HMV A;  4HMW A;  2R6V A;  1USF A;  4ZKY A;  2HQ7 A;  2HQ9 A;  3VYA A;  4XHY A;  2FUR A;  3FKH A;  3RH7 A;  1T9M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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2R6VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations