2R6VA

Crystal structure of fmn-binding protein (np_142786.1) from pyrococcus horikoshii at 1.35 a resolution
Total Genus 41
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
182
structure length
182
Chain Sequence
HHHENLYFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (3-7)EMPTYAH1 (50-58)3H2 (20-22)TVIII2 (35-38)TI5 (157-160)S2 (31-35)AH2 (71-78)3H3 (68-70)TIV2 (28-31)S10 (160-163)S3 (40-45)TIV3 (36-39)TI1 (46-49)S8 (124-136)TI3 (104-107)S5 (93-95)TI2 (85-88)S6 (102-104)S7 (109-121)S9 (153-157)TIV6 (142-145)3H6 (148-150)S4 (60-65)3H4 (83-85)TIV4 (96-99)TI4 (141-144)3H5 (138-141)TII'1 (121-124)S1 (14-16)Updating...
connected with : NaN
publication title Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution
rcsb
molecule keywords Uncharacterized protein PH0856
molecule tags Flavoprotein
source organism Pyrococcus horikoshii
total genus 41
structure length 182
sequence length 182
ec nomenclature
pdb deposition date 2007-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2r6vA01
4HMVA 4HMUA 2HHZA 3KYGA 4L82A 1W3RA 3SWJA 4HMSA 1NRGA 2QCKA 1G76A 3F7EA 2ARZA 3EC6A 3HMZA 3R5ZA 1AXJA 2A2JA 2FG9A 3BNKA 3K87A 3PFTA 3U35A 2QEAA 2R6VA 2HQ9A 3A6RA 2ECRA 1DNLA 2ASFA 4ZKYA 3ZOEA 3CP3A 2X1JA 3KYFA 1FLMA 1WV4A 5JABA 1G78A 3R5RA 2OU5A 4YBNA 3ZOCA 1I0RA 1CI0A 1W9AA 1WLKA 4IRAA 3FGEA 1TY9A 2RE7A 3AMFA 1T9MA 1WGBA 2OL5A 3VY5A 2D38A 2FURA 1W3QA 3BPKA 1W3PA 2D5MA 1VL7A 2HQ7A 5CHEC 3GASA 3K88A 3TGVA 4YWNA 2HTDA 3BA3A 2I02A 2IABA 2Q9KA 3NFWA 2ECUA 1RFEA 3FKHA 3B5MA 4R82A 2IMLA 4Z85A 2X1KA 3K86A 3IN6A 2E83A 3HY8A 4HMTA 4XJ2A 3R5LA 2FHQA 1I0SA 2PTFA 2I51A 1RZ1A 3VY2A 1XHNA 3R5PA 3DNHA 2NR4A 2R0XA 3RH7A 3DB0A 1G77A 3ZOFA 1YLNA 4XHYA 1WLIA 3ZOHA 3DMBA 1G79A 5CHOA 3A20A 3E4VA 1JNWA 2ED4A 3R5YA 1W3OA 2HTIA 4HMWA 5ESCA 1YOAA 3ZODA 5BNCA 2GJGA 3ZOGA 1EJEA 2VPAA 1USCA 1USFA 3U34A 2RDEA 4Y9IA 3CB0A 1Y30A 4HMXA 4QVBA 4HX6A 3VYAA 2D36A 2D37A 2AQ6A 3U0IA 1XXOA 4F07A 3A6QA 3R5WA 1RZ0A 3AWHA 3H96A 2IG6A 4N7RC 3U5WA
chains in the Genus database with same CATH superfamily
4HMVA 4HMUA 2HHZA 3KYGA 4L82A 1W3RA 3EAAA 4HMSA 3SWJA 1NRGA 2QCKA 1G76A 3F7EA 4TV4A 2ARZA 3EC6A 3HMZA 3R5ZA 1AXJA 2A2JA 2FG9A 3BNKA 3K87A 2L1TA 3PFTA 3U35A 2QEAA 2R6VA 2HQ9A 3A6RA 2ECRA 1DNLA 2ASFA 4ZKYA 3ZOEA 3CP3A 2X1JA 3KYFA 1FLMA 1WV4A 5JABA 1G78A 3R5RA 2OU5A 4YBNA 3ZOCA 1I0RA 1CI0A 1W9AA 1WLKA 4IRAA 3FGEA 1TY9A 2RE7A 3AMFA 1T9MA 1WGBA 2OL5A 3VY5A 2D38A 2FURA 1W3QA 3BPKA 1W3PA 2D5MA 2K4QA 1VL7A 2HQ7A 5CHEC 3GASA 3K88A 3TGVA 4YWNA 2HTDA 3BA3A 2I02A 2IABA 2Q9KA 3NFWA 2ECUA 1RFEA 3FKHA 3B5MA 4R82A 2IMLA 4Z85A 2X1KA 3K86A 4W64A 4MTKA 3IN6A 2E83A 3HY8A 4HMTA 4XJ2A 3R5LA 2FHQA 1I0SA 2PTFA 2I51A 1RZ1A 3HE1A 3VY2A 1XHNA 3R5PA 3DNHA 2NR4A 2R0XA 3RH7A 3DB0A 1G77A 3ZOFA 1YLNA 4XHYA 1WLIA 3ZOHA 3DMBA 1G79A 5CHOA 3A20A 3E4VA 1JNWA 2ED4A 3R5YA 1W3OA 2HTIA 4HMWA 5ESCA 1YOAA 3ZODA 5BNCA 2GJGA 3ZOGA 1EJEA 4HKHA 2VPAA 1USCA 1USFA 3U34A 2GUJA 2RDEA 4Y9IA 3CB0A 4UHVA 1Y30A 4HMXA 4QVBA 1Y12A 4HX6A 3VYAA 2D36A 2D37A 2AQ6A 3U0IA 1XXOA 4F07A 2P5ZX 3A6QA 3R5WA 1RZ0A 3AWHA 3H96A 2IG6A 3V4HA 4N7RC 3U5WA
chains in the Genus database with same CATH topology
4HMVA 4HMUA 2HHZA 3KYGA 4L82A 1W3RA 3SWJA 4HMSA 1NRGA 2QCKA 1G76A 3F7EA 2ARZA 3EC6A 3HMZA 3R5ZA 1AXJA 2A2JA 2FG9A 3BNKA 3K87A 3PFTA 3U35A 2QEAA 2R6VA 2HQ9A 3A6RA 2ECRA 1DNLA 2ASFA 4ZKYA 3ZOEA 3CP3A 2X1JA 3KYFA 1FLMA 1WV4A 5JABA 1G78A 3R5RA 2OU5A 4YBNA 3ZOCA 1I0RA 1CI0A 1W9AA 1WLKA 4IRAA 3FGEA 1TY9A 2RE7A 3AMFA 1T9MA 1WGBA 2OL5A 3VY5A 2D38A 2FURA 1W3QA 3BPKA 1W3PA 2D5MA 1VL7A 2HQ7A 5CHEC 3GASA 3K88A 3TGVA 4YWNA 2HTDA 3BA3A 2I02A 2IABA 2Q9KA 3NFWA 2ECUA 1RFEA 3FKHA 3B5MA 4R82A 2IMLA 4Z85A 2X1KA 3K86A 3IN6A 2E83A 3HY8A 4HMTA 4XJ2A 3R5LA 2FHQA 1I0SA 2PTFA 2I51A 1RZ1A 3VY2A 1XHNA 3R5PA 3DNHA 2NR4A 2R0XA 3RH7A 3DB0A 1G77A 3ZOFA 1YLNA 4XHYA 1WLIA 3ZOHA 3DMBA 1G79A 5CHOA 3A20A 3E4VA 1JNWA 2ED4A 3R5YA 1W3OA 2HTIA 4HMWA 5ESCA 1YOAA 3ZODA 5BNCA 2GJGA 3ZOGA 1EJEA 2VPAA 1USCA 1USFA 3U34A 2RDEA 4Y9IA 3CB0A 1Y30A 4HMXA 4QVBA 4HX6A 3VYAA 2D36A 2D37A 2AQ6A 3U0IA 1XXOA 4F07A 3A6QA 3R5WA 1RZ0A 3AWHA 3H96A 2IG6A 4N7RC 3U5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HMV A;  4HMU A;  2HHZ A;  3KYG A;  4L82 A;  1W3R A;  3SWJ A;  4HMS A;  1NRG A;  2QCK A;  1G76 A;  3F7E A;  2ARZ A;  3EC6 A;  3HMZ A;  3R5Z A;  1AXJ A;  2A2J A;  2FG9 A;  3BNK A;  3K87 A;  3PFT A;  3U35 A;  2QEA A;  2R6V A;  2HQ9 A;  3A6R A;  2ECR A;  1DNL A;  2ASF A;  4ZKY A;  3ZOE A;  3CP3 A;  2X1J A;  3KYF A;  1FLM A;  1WV4 A;  5JAB A;  1G78 A;  3R5R A;  2OU5 A;  4YBN A;  3ZOC A;  1I0R A;  1CI0 A;  1W9A A;  1WLK A;  4IRA A;  3FGE A;  1TY9 A;  2RE7 A;  3AMF A;  1T9M A;  1WGB A;  2OL5 A;  3VY5 A;  2D38 A;  2FUR A;  1W3Q A;  3BPK A;  1W3P A;  2D5M A;  1VL7 A;  2HQ7 A;  5CHE C;  3GAS A;  3K88 A;  3TGV A;  4YWN A;  2HTD A;  3BA3 A;  2I02 A;  2IAB A;  2Q9K A;  3NFW A;  2ECU A;  1RFE A;  3FKH A;  3B5M A;  4R82 A;  2IML A;  4Z85 A;  2X1K A;  3K86 A;  3IN6 A;  2E83 A;  3HY8 A;  4HMT A;  4XJ2 A;  3R5L A;  2FHQ A;  1I0S A;  2PTF A;  2I51 A;  1RZ1 A;  3VY2 A;  1XHN A;  3R5P A;  3DNH A;  2NR4 A;  2R0X A;  3RH7 A;  3DB0 A;  1G77 A;  3ZOF A;  1YLN A;  4XHY A;  1WLI A;  3ZOH A;  3DMB A;  1G79 A;  5CHO A;  3A20 A;  3E4V A;  1JNW A;  2ED4 A;  3R5Y A;  1W3O A;  2HTI A;  4HMW A;  5ESC A;  1YOA A;  3ZOD A;  5BNC A;  2GJG A;  3ZOG A;  1EJE A;  2VPA A;  1USC A;  1USF A;  3U34 A;  2RDE A;  4Y9I A;  3CB0 A;  1Y30 A;  4HMX A;  4QVB A;  4HX6 A;  3VYA A;  2D36 A;  2D37 A;  2AQ6 A;  3U0I A;  1XXO A;  4F07 A;  3A6Q A;  3R5W A;  1RZ0 A;  3AWH A;  3H96 A;  2IG6 A;  4N7R C;  3U5W A; 
#chains in the Genus database with same CATH topology
 4HMV A;  4HMU A;  2HHZ A;  3KYG A;  4L82 A;  1W3R A;  3EAA A;  4HMS A;  3SWJ A;  1NRG A;  2QCK A;  1G76 A;  3F7E A;  4TV4 A;  2ARZ A;  3EC6 A;  3HMZ A;  3R5Z A;  1AXJ A;  2A2J A;  2FG9 A;  3BNK A;  3K87 A;  2L1T A;  3PFT A;  3U35 A;  2QEA A;  2R6V A;  2HQ9 A;  3A6R A;  2ECR A;  1DNL A;  2ASF A;  4ZKY A;  3ZOE A;  3CP3 A;  2X1J A;  3KYF A;  1FLM A;  1WV4 A;  5JAB A;  1G78 A;  3R5R A;  2OU5 A;  4YBN A;  3ZOC A;  1I0R A;  1CI0 A;  1W9A A;  1WLK A;  4IRA A;  3FGE A;  1TY9 A;  2RE7 A;  3AMF A;  1T9M A;  1WGB A;  2OL5 A;  3VY5 A;  2D38 A;  2FUR A;  1W3Q A;  3BPK A;  1W3P A;  2D5M A;  2K4Q A;  1VL7 A;  2HQ7 A;  5CHE C;  3GAS A;  3K88 A;  3TGV A;  4YWN A;  2HTD A;  3BA3 A;  2I02 A;  2IAB A;  2Q9K A;  3NFW A;  2ECU A;  1RFE A;  3FKH A;  3B5M A;  4R82 A;  2IML A;  4Z85 A;  2X1K A;  3K86 A;  4W64 A;  4MTK A;  3IN6 A;  2E83 A;  3HY8 A;  4HMT A;  4XJ2 A;  3R5L A;  2FHQ A;  1I0S A;  2PTF A;  2I51 A;  1RZ1 A;  3HE1 A;  3VY2 A;  1XHN A;  3R5P A;  3DNH A;  2NR4 A;  2R0X A;  3RH7 A;  3DB0 A;  1G77 A;  3ZOF A;  1YLN A;  4XHY A;  1WLI A;  3ZOH A;  3DMB A;  1G79 A;  5CHO A;  3A20 A;  3E4V A;  1JNW A;  2ED4 A;  3R5Y A;  1W3O A;  2HTI A;  4HMW A;  5ESC A;  1YOA A;  3ZOD A;  5BNC A;  2GJG A;  3ZOG A;  1EJE A;  4HKH A;  2VPA A;  1USC A;  1USF A;  3U34 A;  2GUJ A;  2RDE A;  4Y9I A;  3CB0 A;  4UHV A;  1Y30 A;  4HMX A;  4QVB A;  1Y12 A;  4HX6 A;  3VYA A;  2D36 A;  2D37 A;  2AQ6 A;  3U0I A;  1XXO A;  4F07 A;  2P5Z X;  3A6Q A;  3R5W A;  1RZ0 A;  3AWH A;  3H96 A;  2IG6 A;  3V4H A;  4N7R C;  3U5W A; 
#chains in the Genus database with same CATH homology
 4HMV A;  4HMU A;  2HHZ A;  3KYG A;  4L82 A;  1W3R A;  3SWJ A;  4HMS A;  1NRG A;  2QCK A;  1G76 A;  3F7E A;  2ARZ A;  3EC6 A;  3HMZ A;  3R5Z A;  1AXJ A;  2A2J A;  2FG9 A;  3BNK A;  3K87 A;  3PFT A;  3U35 A;  2QEA A;  2R6V A;  2HQ9 A;  3A6R A;  2ECR A;  1DNL A;  2ASF A;  4ZKY A;  3ZOE A;  3CP3 A;  2X1J A;  3KYF A;  1FLM A;  1WV4 A;  5JAB A;  1G78 A;  3R5R A;  2OU5 A;  4YBN A;  3ZOC A;  1I0R A;  1CI0 A;  1W9A A;  1WLK A;  4IRA A;  3FGE A;  1TY9 A;  2RE7 A;  3AMF A;  1T9M A;  1WGB A;  2OL5 A;  3VY5 A;  2D38 A;  2FUR A;  1W3Q A;  3BPK A;  1W3P A;  2D5M A;  1VL7 A;  2HQ7 A;  5CHE C;  3GAS A;  3K88 A;  3TGV A;  4YWN A;  2HTD A;  3BA3 A;  2I02 A;  2IAB A;  2Q9K A;  3NFW A;  2ECU A;  1RFE A;  3FKH A;  3B5M A;  4R82 A;  2IML A;  4Z85 A;  2X1K A;  3K86 A;  3IN6 A;  2E83 A;  3HY8 A;  4HMT A;  4XJ2 A;  3R5L A;  2FHQ A;  1I0S A;  2PTF A;  2I51 A;  1RZ1 A;  3VY2 A;  1XHN A;  3R5P A;  3DNH A;  2NR4 A;  2R0X A;  3RH7 A;  3DB0 A;  1G77 A;  3ZOF A;  1YLN A;  4XHY A;  1WLI A;  3ZOH A;  3DMB A;  1G79 A;  5CHO A;  3A20 A;  3E4V A;  1JNW A;  2ED4 A;  3R5Y A;  1W3O A;  2HTI A;  4HMW A;  5ESC A;  1YOA A;  3ZOD A;  5BNC A;  2GJG A;  3ZOG A;  1EJE A;  2VPA A;  1USC A;  1USF A;  3U34 A;  2RDE A;  4Y9I A;  3CB0 A;  1Y30 A;  4HMX A;  4QVB A;  4HX6 A;  3VYA A;  2D36 A;  2D37 A;  2AQ6 A;  3U0I A;  1XXO A;  4F07 A;  3A6Q A;  3R5W A;  1RZ0 A;  3AWH A;  3H96 A;  2IG6 A;  4N7R C;  3U5W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.