2R6VA

Crystal structure of fmn-binding protein (np_142786.1) from pyrococcus horikoshii at 1.35 a resolution
Total Genus 41
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
182
structure length
182
Chain Sequence
HHHENLYFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (3-7)EMPTYAH1 (50-58)3H2 (20-22)TVIII2 (35-38)TI5 (157-160)S2 (31-35)AH2 (71-78)3H3 (68-70)TIV2 (28-31)S10 (160-163)S3 (40-45)TIV3 (36-39)TI1 (46-49)S8 (124-136)TI3 (104-107)S5 (93-95)TI2 (85-88)S6 (102-104)S7 (109-121)S9 (153-157)TIV6 (142-145)3H6 (148-150)S4 (60-65)3H4 (83-85)TIV4 (96-99)TI4 (141-144)3H5 (138-141)TII'1 (121-124)S1 (14-16)Updating...
connected with : NaN
publication title Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution
rcsb
molecule keywords Uncharacterized protein PH0856
molecule tags Flavoprotein
source organism Pyrococcus horikoshii
total genus 41
structure length 182
sequence length 182
ec nomenclature
pdb deposition date 2007-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2r6vA01
2IMLA 1WV4A 2OU5A 3R5YA 3TGVA 2HHZA 2IG6A 3A6QA 5CHOA 4HMSA 1TY9A 2QEAA 3VYAA 1T9MA 2X1KA 3EC6A 4IRAA 2R6VA 1VL7A 2HTDA 1W9AA 4YBNA 2RDEA 3NFWA 2I51A 4HMWA 3K86A 2AQ6A 4L82A 1WGBA 4F07A 2FHQA 4Z85A 3SWJA 4HMUA 2NR4A 3R5ZA 3HMZA 3U0IA 1G76A 2D38A 2ECRA 2PTFA 2OL5A 1RFEA 1W3QA 3R5PA 3R5WA 3ZOHA 3ZOEA 2GJGA 3AWHA 2D36A 3RH7A 2IABA 1AXJA 1JNWA 4HMXA 2ASFA 3AMFA 2HQ9A 4Y9IA 3DMBA 3DNHA 3F7EA 4QVBA 3A20A 2FG9A 3K87A 1I0SA 3K88A 1W3PA 3E4VA 2D5MA 4N7RC 1CI0A 3BA3A 4HX6A 1EJEA 2ED4A 4HMVA 3U35A 2ARZA 3ZOCA 1I0RA 5BNCA 1XHNA 3R5RA 3CB0A 3KYGA 2QCKA 1G77A 2A2JA 2R0XA 3BNKA 3HY8A 1XXOA 3H96A 3VY5A 3ZODA 2HTIA 2HQ7A 3IN6A 1YOAA 4YWNA 1G78A 2D37A 2E83A 2I02A 3R5LA 4HMTA 3FKHA 1RZ1A 3CP3A 3KYFA 1W3OA 1Y30A 4ZKYA 5JABA 2FURA 3U5WA 3ZOFA 3GASA 3VY2A 2RE7A 3ZOGA 4R82A 1G79A 3PFTA 1USFA 1USCA 1DNLA 1WLIA 3FGEA 2X1JA 3U34A 3DB0A 2VPAA 1WLKA 5ESCA 1FLMA 1RZ0A 4XHYA 2ECUA 1W3RA 3BPKA 1YLNA 5CHEC 3B5MA 1NRGA 3A6RA 2Q9KA 4XJ2A
chains in the Genus database with same CATH superfamily
2IMLA 1WV4A 2OU5A 3R5YA 3TGVA 2HHZA 2IG6A 3A6QA 4HKHA 5CHOA 2K4QA 4HMSA 1TY9A 2QEAA 3VYAA 1T9MA 2X1KA 3EC6A 4IRAA 2R6VA 1VL7A 2HTDA 1W9AA 4YBNA 2RDEA 3NFWA 2I51A 4HMWA 3K86A 4UHVA 2AQ6A 4L82A 1WGBA 4F07A 2FHQA 4Z85A 3SWJA 4HMUA 2NR4A 3R5ZA 3HMZA 3U0IA 1G76A 2D38A 2ECRA 2PTFA 2OL5A 1RFEA 1W3QA 3R5PA 3R5WA 3ZOHA 3ZOEA 2GJGA 3AWHA 2D36A 3RH7A 2IABA 1AXJA 1JNWA 4HMXA 2ASFA 3AMFA 2HQ9A 4W64A 4Y9IA 3DMBA 3DNHA 3F7EA 4QVBA 3A20A 2FG9A 3V4HA 3K87A 1I0SA 3K88A 1W3PA 3E4VA 2D5MA 4N7RC 2GUJA 1CI0A 3BA3A 1Y12A 4HX6A 1EJEA 2ED4A 4HMVA 3U35A 2ARZA 3ZOCA 1I0RA 5BNCA 1XHNA 3R5RA 4MTKA 3CB0A 3KYGA 2QCKA 1G77A 2A2JA 2R0XA 3BNKA 3HY8A 1XXOA 3HE1A 3H96A 3VY5A 3ZODA 2P5ZX 2HTIA 2HQ7A 3IN6A 1YOAA 4YWNA 1G78A 2D37A 2E83A 2I02A 3R5LA 4HMTA 3FKHA 1RZ1A 3CP3A 3KYFA 4TV4A 1W3OA 1Y30A 4ZKYA 5JABA 2FURA 3U5WA 3ZOFA 3GASA 3VY2A 3EAAA 2RE7A 3ZOGA 4R82A 1G79A 3PFTA 1USFA 1USCA 1DNLA 1WLIA 3FGEA 2X1JA 3U34A 3DB0A 2VPAA 1WLKA 5ESCA 1FLMA 2L1TA 1RZ0A 4XHYA 2ECUA 1W3RA 3BPKA 1YLNA 5CHEC 3B5MA 1NRGA 3A6RA 2Q9KA 4XJ2A
chains in the Genus database with same CATH topology
2IMLA 1WV4A 2OU5A 3R5YA 3TGVA 2HHZA 2IG6A 3A6QA 5CHOA 4HMSA 1TY9A 2QEAA 3VYAA 1T9MA 2X1KA 3EC6A 4IRAA 2R6VA 1VL7A 2HTDA 1W9AA 4YBNA 2RDEA 3NFWA 2I51A 4HMWA 3K86A 2AQ6A 4L82A 1WGBA 4F07A 2FHQA 4Z85A 3SWJA 4HMUA 2NR4A 3R5ZA 3HMZA 3U0IA 1G76A 2D38A 2ECRA 2PTFA 2OL5A 1RFEA 1W3QA 3R5PA 3R5WA 3ZOHA 3ZOEA 2GJGA 3AWHA 2D36A 3RH7A 2IABA 1AXJA 1JNWA 4HMXA 2ASFA 3AMFA 2HQ9A 4Y9IA 3DMBA 3DNHA 3F7EA 4QVBA 3A20A 2FG9A 3K87A 1I0SA 3K88A 1W3PA 3E4VA 2D5MA 4N7RC 1CI0A 3BA3A 4HX6A 1EJEA 2ED4A 4HMVA 3U35A 2ARZA 3ZOCA 1I0RA 5BNCA 1XHNA 3R5RA 3CB0A 3KYGA 2QCKA 1G77A 2A2JA 2R0XA 3BNKA 3HY8A 1XXOA 3H96A 3VY5A 3ZODA 2HTIA 2HQ7A 3IN6A 1YOAA 4YWNA 1G78A 2D37A 2E83A 2I02A 3R5LA 4HMTA 3FKHA 1RZ1A 3CP3A 3KYFA 1W3OA 1Y30A 4ZKYA 5JABA 2FURA 3U5WA 3ZOFA 3GASA 3VY2A 2RE7A 3ZOGA 4R82A 1G79A 3PFTA 1USFA 1USCA 1DNLA 1WLIA 3FGEA 2X1JA 3U34A 3DB0A 2VPAA 1WLKA 5ESCA 1FLMA 1RZ0A 4XHYA 2ECUA 1W3RA 3BPKA 1YLNA 5CHEC 3B5MA 1NRGA 3A6RA 2Q9KA 4XJ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IML A;  1WV4 A;  2OU5 A;  3R5Y A;  3TGV A;  2HHZ A;  2IG6 A;  3A6Q A;  5CHO A;  4HMS A;  1TY9 A;  2QEA A;  3VYA A;  1T9M A;  2X1K A;  3EC6 A;  4IRA A;  2R6V A;  1VL7 A;  2HTD A;  1W9A A;  4YBN A;  2RDE A;  3NFW A;  2I51 A;  4HMW A;  3K86 A;  2AQ6 A;  4L82 A;  1WGB A;  4F07 A;  2FHQ A;  4Z85 A;  3SWJ A;  4HMU A;  2NR4 A;  3R5Z A;  3HMZ A;  3U0I A;  1G76 A;  2D38 A;  2ECR A;  2PTF A;  2OL5 A;  1RFE A;  1W3Q A;  3R5P A;  3R5W A;  3ZOH A;  3ZOE A;  2GJG A;  3AWH A;  2D36 A;  3RH7 A;  2IAB A;  1AXJ A;  1JNW A;  4HMX A;  2ASF A;  3AMF A;  2HQ9 A;  4Y9I A;  3DMB A;  3DNH A;  3F7E A;  4QVB A;  3A20 A;  2FG9 A;  3K87 A;  1I0S A;  3K88 A;  1W3P A;  3E4V A;  2D5M A;  4N7R C;  1CI0 A;  3BA3 A;  4HX6 A;  1EJE A;  2ED4 A;  4HMV A;  3U35 A;  2ARZ A;  3ZOC A;  1I0R A;  5BNC A;  1XHN A;  3R5R A;  3CB0 A;  3KYG A;  2QCK A;  1G77 A;  2A2J A;  2R0X A;  3BNK A;  3HY8 A;  1XXO A;  3H96 A;  3VY5 A;  3ZOD A;  2HTI A;  2HQ7 A;  3IN6 A;  1YOA A;  4YWN A;  1G78 A;  2D37 A;  2E83 A;  2I02 A;  3R5L A;  4HMT A;  3FKH A;  1RZ1 A;  3CP3 A;  3KYF A;  1W3O A;  1Y30 A;  4ZKY A;  5JAB A;  2FUR A;  3U5W A;  3ZOF A;  3GAS A;  3VY2 A;  2RE7 A;  3ZOG A;  4R82 A;  1G79 A;  3PFT A;  1USF A;  1USC A;  1DNL A;  1WLI A;  3FGE A;  2X1J A;  3U34 A;  3DB0 A;  2VPA A;  1WLK A;  5ESC A;  1FLM A;  1RZ0 A;  4XHY A;  2ECU A;  1W3R A;  3BPK A;  1YLN A;  5CHE C;  3B5M A;  1NRG A;  3A6R A;  2Q9K A;  4XJ2 A; 
#chains in the Genus database with same CATH topology
 2IML A;  1WV4 A;  2OU5 A;  3R5Y A;  3TGV A;  2HHZ A;  2IG6 A;  3A6Q A;  4HKH A;  5CHO A;  2K4Q A;  4HMS A;  1TY9 A;  2QEA A;  3VYA A;  1T9M A;  2X1K A;  3EC6 A;  4IRA A;  2R6V A;  1VL7 A;  2HTD A;  1W9A A;  4YBN A;  2RDE A;  3NFW A;  2I51 A;  4HMW A;  3K86 A;  4UHV A;  2AQ6 A;  4L82 A;  1WGB A;  4F07 A;  2FHQ A;  4Z85 A;  3SWJ A;  4HMU A;  2NR4 A;  3R5Z A;  3HMZ A;  3U0I A;  1G76 A;  2D38 A;  2ECR A;  2PTF A;  2OL5 A;  1RFE A;  1W3Q A;  3R5P A;  3R5W A;  3ZOH A;  3ZOE A;  2GJG A;  3AWH A;  2D36 A;  3RH7 A;  2IAB A;  1AXJ A;  1JNW A;  4HMX A;  2ASF A;  3AMF A;  2HQ9 A;  4W64 A;  4Y9I A;  3DMB A;  3DNH A;  3F7E A;  4QVB A;  3A20 A;  2FG9 A;  3V4H A;  3K87 A;  1I0S A;  3K88 A;  1W3P A;  3E4V A;  2D5M A;  4N7R C;  2GUJ A;  1CI0 A;  3BA3 A;  1Y12 A;  4HX6 A;  1EJE A;  2ED4 A;  4HMV A;  3U35 A;  2ARZ A;  3ZOC A;  1I0R A;  5BNC A;  1XHN A;  3R5R A;  4MTK A;  3CB0 A;  3KYG A;  2QCK A;  1G77 A;  2A2J A;  2R0X A;  3BNK A;  3HY8 A;  1XXO A;  3HE1 A;  3H96 A;  3VY5 A;  3ZOD A;  2P5Z X;  2HTI A;  2HQ7 A;  3IN6 A;  1YOA A;  4YWN A;  1G78 A;  2D37 A;  2E83 A;  2I02 A;  3R5L A;  4HMT A;  3FKH A;  1RZ1 A;  3CP3 A;  3KYF A;  4TV4 A;  1W3O A;  1Y30 A;  4ZKY A;  5JAB A;  2FUR A;  3U5W A;  3ZOF A;  3GAS A;  3VY2 A;  3EAA A;  2RE7 A;  3ZOG A;  4R82 A;  1G79 A;  3PFT A;  1USF A;  1USC A;  1DNL A;  1WLI A;  3FGE A;  2X1J A;  3U34 A;  3DB0 A;  2VPA A;  1WLK A;  5ESC A;  1FLM A;  2L1T A;  1RZ0 A;  4XHY A;  2ECU A;  1W3R A;  3BPK A;  1YLN A;  5CHE C;  3B5M A;  1NRG A;  3A6R A;  2Q9K A;  4XJ2 A; 
#chains in the Genus database with same CATH homology
 2IML A;  1WV4 A;  2OU5 A;  3R5Y A;  3TGV A;  2HHZ A;  2IG6 A;  3A6Q A;  5CHO A;  4HMS A;  1TY9 A;  2QEA A;  3VYA A;  1T9M A;  2X1K A;  3EC6 A;  4IRA A;  2R6V A;  1VL7 A;  2HTD A;  1W9A A;  4YBN A;  2RDE A;  3NFW A;  2I51 A;  4HMW A;  3K86 A;  2AQ6 A;  4L82 A;  1WGB A;  4F07 A;  2FHQ A;  4Z85 A;  3SWJ A;  4HMU A;  2NR4 A;  3R5Z A;  3HMZ A;  3U0I A;  1G76 A;  2D38 A;  2ECR A;  2PTF A;  2OL5 A;  1RFE A;  1W3Q A;  3R5P A;  3R5W A;  3ZOH A;  3ZOE A;  2GJG A;  3AWH A;  2D36 A;  3RH7 A;  2IAB A;  1AXJ A;  1JNW A;  4HMX A;  2ASF A;  3AMF A;  2HQ9 A;  4Y9I A;  3DMB A;  3DNH A;  3F7E A;  4QVB A;  3A20 A;  2FG9 A;  3K87 A;  1I0S A;  3K88 A;  1W3P A;  3E4V A;  2D5M A;  4N7R C;  1CI0 A;  3BA3 A;  4HX6 A;  1EJE A;  2ED4 A;  4HMV A;  3U35 A;  2ARZ A;  3ZOC A;  1I0R A;  5BNC A;  1XHN A;  3R5R A;  3CB0 A;  3KYG A;  2QCK A;  1G77 A;  2A2J A;  2R0X A;  3BNK A;  3HY8 A;  1XXO A;  3H96 A;  3VY5 A;  3ZOD A;  2HTI A;  2HQ7 A;  3IN6 A;  1YOA A;  4YWN A;  1G78 A;  2D37 A;  2E83 A;  2I02 A;  3R5L A;  4HMT A;  3FKH A;  1RZ1 A;  3CP3 A;  3KYF A;  1W3O A;  1Y30 A;  4ZKY A;  5JAB A;  2FUR A;  3U5W A;  3ZOF A;  3GAS A;  3VY2 A;  2RE7 A;  3ZOG A;  4R82 A;  1G79 A;  3PFT A;  1USF A;  1USC A;  1DNL A;  1WLI A;  3FGE A;  2X1J A;  3U34 A;  3DB0 A;  2VPA A;  1WLK A;  5ESC A;  1FLM A;  1RZ0 A;  4XHY A;  2ECU A;  1W3R A;  3BPK A;  1YLN A;  5CHE C;  3B5M A;  1NRG A;  3A6R A;  2Q9K A;  4XJ2 A; 
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