2R6VA

Crystal structure of fmn-binding protein (np_142786.1) from pyrococcus horikoshii at 1.35 a resolution
Total Genus 41
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
182
structure length
182
Chain Sequence
HHHENLYFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (3-7)EMPTYAH1 (50-58)3H2 (20-22)TVIII2 (35-38)TI5 (157-160)S2 (31-35)AH2 (71-78)3H3 (68-70)TIV2 (28-31)S10 (160-163)S3 (40-45)TIV3 (36-39)TI1 (46-49)S8 (124-136)TI3 (104-107)S5 (93-95)TI2 (85-88)S6 (102-104)S7 (109-121)S9 (153-157)TIV6 (142-145)3H6 (148-150)S4 (60-65)3H4 (83-85)TIV4 (96-99)TI4 (141-144)3H5 (138-141)TII'1 (121-124)S1 (14-16)Updating...
connected with : NaN
publication title Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution
rcsb
molecule keywords Uncharacterized protein PH0856
molecule tags Flavoprotein
source organism Pyrococcus horikoshii
total genus 41
structure length 182
sequence length 182
ec nomenclature
pdb deposition date 2007-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2r6vA01
3SWJA 2HTIA 2Q9KA 3VY5A 3U34A 4HMVA 1TY9A 2FURA 1WV4A 2HQ9A 3ZOGA 3DNHA 3KYGA 3F7EA 1YOAA 3BPKA 4XJ2A 1NRGA 2HHZA 1W3QA 4YWNA 2NR4A 2RE7A 5CHOA 2E83A 3VYAA 1G76A 3R5YA 3TGVA 2I02A 3H96A 2ED4A 1AXJA 3A6RA 2OL5A 3BNKA 4Z85A 1JNWA 3CB0A 2IG6A 2D36A 1W9AA 2RDEA 1XHNA 4HMTA 3PFTA 2HTDA 3BA3A 2HQ7A 1FLMA 1W3RA 3CP3A 4HMSA 3NFWA 2ECRA 4XHYA 1USFA 3E4VA 2AQ6A 1RFEA 5BNCA 1WLIA 2ASFA 4HX6A 1RZ0A 3EC6A 1I0SA 3R5PA 3AWHA 4YBNA 2D37A 3R5RA 3A20A 1Y30A 1G78A 3KYFA 4L82A 3VY2A 2X1KA 2R6VA 2D5MA 2IABA 2A2JA 1YLNA 2X1JA 3FKHA 3ZOEA 3K87A 3B5MA 4IRAA 3ZOFA 4HMWA 2ECUA 1XXOA 1DNLA 1RZ1A 1VL7A 2GJGA 3K88A 3R5ZA 4F07A 3AMFA 2PTFA 3HY8A 3K86A 3R5LA 2D38A 2VPAA 4Y9IA 4R82A 3ZOHA 1WGBA 3DB0A 1USCA 3U5WA 1WLKA 3HMZA 5ESCA 3DMBA 2FHQA 3R5WA 3GASA 3U0IA 4QVBA 3A6QA 1W3PA 1EJEA 5JABA 4ZKYA 1G77A 1W3OA 2FG9A 5CHEC 2IMLA 2QCKA 3RH7A 3U35A 1T9MA 3IN6A 2OU5A 2QEAA 3FGEA 4N7RC 2R0XA 4HMXA 1CI0A 2I51A 2ARZA 3ZODA 1I0RA 4HMUA 1G79A 3ZOCA
chains in the Genus database with same CATH superfamily
3SWJA 2HTIA 2Q9KA 2P5ZX 3VY5A 3U34A 4HMVA 1TY9A 2FURA 1WV4A 2HQ9A 3ZOGA 3DNHA 3KYGA 3F7EA 1YOAA 3BPKA 4XJ2A 1NRGA 2HHZA 1W3QA 4YWNA 2NR4A 2RE7A 5CHOA 2E83A 3VYAA 1G76A 3R5YA 3TGVA 2I02A 2GUJA 3H96A 2ED4A 1AXJA 3A6RA 2OL5A 3BNKA 4Z85A 1JNWA 3CB0A 2IG6A 2D36A 4W64A 1W9AA 2RDEA 4HKHA 1XHNA 4HMTA 3PFTA 2K4QA 2HTDA 3BA3A 2HQ7A 1FLMA 1W3RA 1Y12A 3CP3A 4HMSA 3NFWA 2ECRA 4UHVA 4XHYA 1USFA 3E4VA 2AQ6A 1RFEA 5BNCA 1WLIA 2ASFA 4HX6A 1RZ0A 3EC6A 3HE1A 1I0SA 3R5PA 3AWHA 4YBNA 2D37A 3R5RA 4MTKA 3A20A 1Y30A 1G78A 3KYFA 4L82A 3VY2A 2X1KA 2R6VA 2D5MA 2IABA 2A2JA 1YLNA 2X1JA 3FKHA 3ZOEA 3K87A 3B5MA 4IRAA 3ZOFA 4HMWA 2ECUA 1XXOA 1DNLA 1RZ1A 1VL7A 2GJGA 3K88A 3R5ZA 4F07A 3AMFA 2PTFA 3HY8A 3K86A 3R5LA 2D38A 2VPAA 4Y9IA 4R82A 3ZOHA 1WGBA 3DB0A 1USCA 3U5WA 4TV4A 1WLKA 3HMZA 5ESCA 3DMBA 2FHQA 3R5WA 3GASA 3U0IA 4QVBA 3A6QA 1W3PA 1EJEA 3EAAA 5JABA 4ZKYA 1G77A 1W3OA 2FG9A 5CHEC 2IMLA 2QCKA 3RH7A 3U35A 1T9MA 3V4HA 3IN6A 2OU5A 2QEAA 3FGEA 4N7RC 2R0XA 4HMXA 1CI0A 2I51A 2ARZA 3ZODA 1I0RA 4HMUA 1G79A 2L1TA 3ZOCA
chains in the Genus database with same CATH topology
3SWJA 2HTIA 2Q9KA 3VY5A 3U34A 4HMVA 1TY9A 2FURA 1WV4A 2HQ9A 3ZOGA 3DNHA 3KYGA 3F7EA 1YOAA 3BPKA 4XJ2A 1NRGA 2HHZA 1W3QA 4YWNA 2NR4A 2RE7A 5CHOA 2E83A 3VYAA 1G76A 3R5YA 3TGVA 2I02A 3H96A 2ED4A 1AXJA 3A6RA 2OL5A 3BNKA 4Z85A 1JNWA 3CB0A 2IG6A 2D36A 1W9AA 2RDEA 1XHNA 4HMTA 3PFTA 2HTDA 3BA3A 2HQ7A 1FLMA 1W3RA 3CP3A 4HMSA 3NFWA 2ECRA 4XHYA 1USFA 3E4VA 2AQ6A 1RFEA 5BNCA 1WLIA 2ASFA 4HX6A 1RZ0A 3EC6A 1I0SA 3R5PA 3AWHA 4YBNA 2D37A 3R5RA 3A20A 1Y30A 1G78A 3KYFA 4L82A 3VY2A 2X1KA 2R6VA 2D5MA 2IABA 2A2JA 1YLNA 2X1JA 3FKHA 3ZOEA 3K87A 3B5MA 4IRAA 3ZOFA 4HMWA 2ECUA 1XXOA 1DNLA 1RZ1A 1VL7A 2GJGA 3K88A 3R5ZA 4F07A 3AMFA 2PTFA 3HY8A 3K86A 3R5LA 2D38A 2VPAA 4Y9IA 4R82A 3ZOHA 1WGBA 3DB0A 1USCA 3U5WA 1WLKA 3HMZA 5ESCA 3DMBA 2FHQA 3R5WA 3GASA 3U0IA 4QVBA 3A6QA 1W3PA 1EJEA 5JABA 4ZKYA 1G77A 1W3OA 2FG9A 5CHEC 2IMLA 2QCKA 3RH7A 3U35A 1T9MA 3IN6A 2OU5A 2QEAA 3FGEA 4N7RC 2R0XA 4HMXA 1CI0A 2I51A 2ARZA 3ZODA 1I0RA 4HMUA 1G79A 3ZOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SWJ A;  2HTI A;  2Q9K A;  3VY5 A;  3U34 A;  4HMV A;  1TY9 A;  2FUR A;  1WV4 A;  2HQ9 A;  3ZOG A;  3DNH A;  3KYG A;  3F7E A;  1YOA A;  3BPK A;  4XJ2 A;  1NRG A;  2HHZ A;  1W3Q A;  4YWN A;  2NR4 A;  2RE7 A;  5CHO A;  2E83 A;  3VYA A;  1G76 A;  3R5Y A;  3TGV A;  2I02 A;  3H96 A;  2ED4 A;  1AXJ A;  3A6R A;  2OL5 A;  3BNK A;  4Z85 A;  1JNW A;  3CB0 A;  2IG6 A;  2D36 A;  1W9A A;  2RDE A;  1XHN A;  4HMT A;  3PFT A;  2HTD A;  3BA3 A;  2HQ7 A;  1FLM A;  1W3R A;  3CP3 A;  4HMS A;  3NFW A;  2ECR A;  4XHY A;  1USF A;  3E4V A;  2AQ6 A;  1RFE A;  5BNC A;  1WLI A;  2ASF A;  4HX6 A;  1RZ0 A;  3EC6 A;  1I0S A;  3R5P A;  3AWH A;  4YBN A;  2D37 A;  3R5R A;  3A20 A;  1Y30 A;  1G78 A;  3KYF A;  4L82 A;  3VY2 A;  2X1K A;  2R6V A;  2D5M A;  2IAB A;  2A2J A;  1YLN A;  2X1J A;  3FKH A;  3ZOE A;  3K87 A;  3B5M A;  4IRA A;  3ZOF A;  4HMW A;  2ECU A;  1XXO A;  1DNL A;  1RZ1 A;  1VL7 A;  2GJG A;  3K88 A;  3R5Z A;  4F07 A;  3AMF A;  2PTF A;  3HY8 A;  3K86 A;  3R5L A;  2D38 A;  2VPA A;  4Y9I A;  4R82 A;  3ZOH A;  1WGB A;  3DB0 A;  1USC A;  3U5W A;  1WLK A;  3HMZ A;  5ESC A;  3DMB A;  2FHQ A;  3R5W A;  3GAS A;  3U0I A;  4QVB A;  3A6Q A;  1W3P A;  1EJE A;  5JAB A;  4ZKY A;  1G77 A;  1W3O A;  2FG9 A;  5CHE C;  2IML A;  2QCK A;  3RH7 A;  3U35 A;  1T9M A;  3IN6 A;  2OU5 A;  2QEA A;  3FGE A;  4N7R C;  2R0X A;  4HMX A;  1CI0 A;  2I51 A;  2ARZ A;  3ZOD A;  1I0R A;  4HMU A;  1G79 A;  3ZOC A; 
#chains in the Genus database with same CATH topology
 3SWJ A;  2HTI A;  2Q9K A;  2P5Z X;  3VY5 A;  3U34 A;  4HMV A;  1TY9 A;  2FUR A;  1WV4 A;  2HQ9 A;  3ZOG A;  3DNH A;  3KYG A;  3F7E A;  1YOA A;  3BPK A;  4XJ2 A;  1NRG A;  2HHZ A;  1W3Q A;  4YWN A;  2NR4 A;  2RE7 A;  5CHO A;  2E83 A;  3VYA A;  1G76 A;  3R5Y A;  3TGV A;  2I02 A;  2GUJ A;  3H96 A;  2ED4 A;  1AXJ A;  3A6R A;  2OL5 A;  3BNK A;  4Z85 A;  1JNW A;  3CB0 A;  2IG6 A;  2D36 A;  4W64 A;  1W9A A;  2RDE A;  4HKH A;  1XHN A;  4HMT A;  3PFT A;  2K4Q A;  2HTD A;  3BA3 A;  2HQ7 A;  1FLM A;  1W3R A;  1Y12 A;  3CP3 A;  4HMS A;  3NFW A;  2ECR A;  4UHV A;  4XHY A;  1USF A;  3E4V A;  2AQ6 A;  1RFE A;  5BNC A;  1WLI A;  2ASF A;  4HX6 A;  1RZ0 A;  3EC6 A;  3HE1 A;  1I0S A;  3R5P A;  3AWH A;  4YBN A;  2D37 A;  3R5R A;  4MTK A;  3A20 A;  1Y30 A;  1G78 A;  3KYF A;  4L82 A;  3VY2 A;  2X1K A;  2R6V A;  2D5M A;  2IAB A;  2A2J A;  1YLN A;  2X1J A;  3FKH A;  3ZOE A;  3K87 A;  3B5M A;  4IRA A;  3ZOF A;  4HMW A;  2ECU A;  1XXO A;  1DNL A;  1RZ1 A;  1VL7 A;  2GJG A;  3K88 A;  3R5Z A;  4F07 A;  3AMF A;  2PTF A;  3HY8 A;  3K86 A;  3R5L A;  2D38 A;  2VPA A;  4Y9I A;  4R82 A;  3ZOH A;  1WGB A;  3DB0 A;  1USC A;  3U5W A;  4TV4 A;  1WLK A;  3HMZ A;  5ESC A;  3DMB A;  2FHQ A;  3R5W A;  3GAS A;  3U0I A;  4QVB A;  3A6Q A;  1W3P A;  1EJE A;  3EAA A;  5JAB A;  4ZKY A;  1G77 A;  1W3O A;  2FG9 A;  5CHE C;  2IML A;  2QCK A;  3RH7 A;  3U35 A;  1T9M A;  3V4H A;  3IN6 A;  2OU5 A;  2QEA A;  3FGE A;  4N7R C;  2R0X A;  4HMX A;  1CI0 A;  2I51 A;  2ARZ A;  3ZOD A;  1I0R A;  4HMU A;  1G79 A;  2L1T A;  3ZOC A; 
#chains in the Genus database with same CATH homology
 3SWJ A;  2HTI A;  2Q9K A;  3VY5 A;  3U34 A;  4HMV A;  1TY9 A;  2FUR A;  1WV4 A;  2HQ9 A;  3ZOG A;  3DNH A;  3KYG A;  3F7E A;  1YOA A;  3BPK A;  4XJ2 A;  1NRG A;  2HHZ A;  1W3Q A;  4YWN A;  2NR4 A;  2RE7 A;  5CHO A;  2E83 A;  3VYA A;  1G76 A;  3R5Y A;  3TGV A;  2I02 A;  3H96 A;  2ED4 A;  1AXJ A;  3A6R A;  2OL5 A;  3BNK A;  4Z85 A;  1JNW A;  3CB0 A;  2IG6 A;  2D36 A;  1W9A A;  2RDE A;  1XHN A;  4HMT A;  3PFT A;  2HTD A;  3BA3 A;  2HQ7 A;  1FLM A;  1W3R A;  3CP3 A;  4HMS A;  3NFW A;  2ECR A;  4XHY A;  1USF A;  3E4V A;  2AQ6 A;  1RFE A;  5BNC A;  1WLI A;  2ASF A;  4HX6 A;  1RZ0 A;  3EC6 A;  1I0S A;  3R5P A;  3AWH A;  4YBN A;  2D37 A;  3R5R A;  3A20 A;  1Y30 A;  1G78 A;  3KYF A;  4L82 A;  3VY2 A;  2X1K A;  2R6V A;  2D5M A;  2IAB A;  2A2J A;  1YLN A;  2X1J A;  3FKH A;  3ZOE A;  3K87 A;  3B5M A;  4IRA A;  3ZOF A;  4HMW A;  2ECU A;  1XXO A;  1DNL A;  1RZ1 A;  1VL7 A;  2GJG A;  3K88 A;  3R5Z A;  4F07 A;  3AMF A;  2PTF A;  3HY8 A;  3K86 A;  3R5L A;  2D38 A;  2VPA A;  4Y9I A;  4R82 A;  3ZOH A;  1WGB A;  3DB0 A;  1USC A;  3U5W A;  1WLK A;  3HMZ A;  5ESC A;  3DMB A;  2FHQ A;  3R5W A;  3GAS A;  3U0I A;  4QVB A;  3A6Q A;  1W3P A;  1EJE A;  5JAB A;  4ZKY A;  1G77 A;  1W3O A;  2FG9 A;  5CHE C;  2IML A;  2QCK A;  3RH7 A;  3U35 A;  1T9M A;  3IN6 A;  2OU5 A;  2QEA A;  3FGE A;  4N7R C;  2R0X A;  4HMX A;  1CI0 A;  2I51 A;  2ARZ A;  3ZOD A;  1I0R A;  4HMU A;  1G79 A;  3ZOC A; 
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similar chains in the Genus database (?% sequence similarity)
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