2X1JA

H71a mutant of the antibiotic resistance protein nima from deinococcus radiodurans
Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYATNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (2-5)TI2 (3-6)EMPTYTI3 (11-14)AH2 (24-33)TI8 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)TI4 (45-48)TI5 (63-66)TIV2 (62-65)S5 (85-99)S3 (67-71)S4 (78-79)TII2 (144-147)S7 (162-175)TIV3 (83-86)AH3 (125-139)TIV4 (145-148)TIV5 (146-149)AH4 (154-158)TI9 (190-193)TIV6 (191-194)TIV1 (17-20)S2 (50-62)S6 (108-123)TI6 (103-106)TII1 (140-143)Updating...
connected with : NaN
publication title Biophysical Characterization and Mutational Analysis of the Antibiotic Resistance Protein Nima from Deinococcus Radiodurans.
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Oxidoreductase
source organism Deinococcus radiodurans
total genus 45
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2010-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2x1jA00
3HMZA 2HTIA 2R6VA 4HMSA 3EC6A 3VY2A 2VPAA 2D5MA 1Y30A 3ZODA 1XXOA 1WV4A 2FURA 4HX6A 3ZOFA 3DB0A 1XHNA 3BNKA 3CP3A 3U5WA 2HTDA 4HMVA 1YLNA 3U35A 2QEAA 3AMFA 3A20A 1VL7A 1DNLA 4HMWA 2ARZA 5ESCA 2QCKA 4HMTA 1WLKA 1W3OA 3F7EA 2D37A 2GJGA 3K88A 3U0IA 3HY8A 2X1JA 2I51A 2RE7A 3DMBA 2FHQA 2IMLA 4XJ2A 1EJEA 1G76A 2AQ6A 3K87A 3B5MA 4N7RC 1FLMA 4F07A 3R5WA 3A6QA 3VYAA 3K86A 3ZOGA 3GASA 4YBNA 1YOAA 3VY5A 1G77A 2HQ7A 2HHZA 4HMUA 1RFEA 3U34A 2HQ9A 3NFWA 3R5YA 1USFA 1WLIA 1W3QA 3BPKA 3ZOHA 1NRGA 5JABA 3RH7A 4YWNA 5CHOA 2FG9A 2PTFA 2IABA 2X1KA 3FKHA 1WGBA 1RZ0A 3IN6A 3R5PA 1RZ1A 2E83A 3BA3A 3DNHA 2R0XA 1CI0A 4R82A 1AXJA 2ECUA 4HMXA 4ZKYA 3TGVA 1TY9A 2ASFA 3CB0A 2NR4A 3R5RA 1W9AA 4Y9IA 4IRAA 1G78A 2OU5A 1W3RA 1JNWA 3PFTA 2IG6A 2I02A 3FGEA 3R5ZA 1G79A 5CHEC 3AWHA 3SWJA 2A2JA 4Z85A 4L82A 3ZOCA 1I0SA 2RDEA 1W3PA 1USCA 3A6RA 1T9MA 3KYGA 3E4VA 2OL5A 3R5LA 4XHYA 2Q9KA 5BNCA 4QVBA 2ED4A 3ZOEA 1I0RA 2D36A 2D38A 3KYFA 2ECRA 3H96A
chains in the Genus database with same CATH superfamily
3HMZA 2HTIA 2R6VA 4HMSA 3EC6A 3VY2A 2VPAA 2D5MA 1Y30A 3ZODA 1XXOA 2L1TA 1WV4A 2FURA 4HX6A 3ZOFA 3DB0A 1XHNA 3BNKA 3CP3A 3U5WA 2HTDA 4HMVA 1YLNA 3U35A 2QEAA 3AMFA 3A20A 1VL7A 1DNLA 4HMWA 2ARZA 5ESCA 2QCKA 4HMTA 1WLKA 1W3OA 3F7EA 2D37A 2GJGA 2P5ZX 3K88A 3U0IA 3HY8A 4MTKA 2X1JA 2I51A 2RE7A 3DMBA 2FHQA 2IMLA 4XJ2A 1EJEA 1G76A 2AQ6A 3K87A 3B5MA 4N7RC 1FLMA 4F07A 3R5WA 3A6QA 4W64A 3VYAA 3K86A 3ZOGA 3GASA 4YBNA 1YOAA 3VY5A 1G77A 2HQ7A 2HHZA 4TV4A 4HMUA 1RFEA 3U34A 2HQ9A 3NFWA 3R5YA 1USFA 1WLIA 1W3QA 3BPKA 1Y12A 1NRGA 3ZOHA 5JABA 3RH7A 4YWNA 5CHOA 2FG9A 2PTFA 2IABA 2X1KA 3HE1A 3V4HA 3FKHA 1WGBA 1RZ0A 2K4QA 3IN6A 3R5PA 1RZ1A 2E83A 3BA3A 3DNHA 2R0XA 1CI0A 4R82A 1AXJA 2ECUA 4UHVA 4HMXA 4ZKYA 3TGVA 1TY9A 2ASFA 3CB0A 2NR4A 3R5RA 1W9AA 4HKHA 4Y9IA 4IRAA 1G78A 2OU5A 1W3RA 1JNWA 3PFTA 2IG6A 2I02A 3FGEA 3R5ZA 1G79A 5CHEC 3AWHA 3SWJA 2A2JA 4Z85A 3EAAA 4L82A 3ZOCA 1I0SA 2RDEA 1W3PA 1USCA 3A6RA 1T9MA 3KYGA 3E4VA 2OL5A 3R5LA 4XHYA 2Q9KA 5BNCA 4QVBA 2ED4A 3ZOEA 1I0RA 2D36A 2GUJA 2D38A 3KYFA 2ECRA 3H96A
chains in the Genus database with same CATH topology
3HMZA 2HTIA 2R6VA 4HMSA 3EC6A 3VY2A 2VPAA 2D5MA 1Y30A 3ZODA 1XXOA 1WV4A 2FURA 4HX6A 3ZOFA 3DB0A 1XHNA 3BNKA 3CP3A 3U5WA 2HTDA 4HMVA 1YLNA 3U35A 2QEAA 3AMFA 3A20A 1VL7A 1DNLA 4HMWA 2ARZA 5ESCA 2QCKA 4HMTA 1WLKA 1W3OA 3F7EA 2D37A 2GJGA 3K88A 3U0IA 3HY8A 2X1JA 2I51A 2RE7A 3DMBA 2FHQA 2IMLA 4XJ2A 1EJEA 1G76A 2AQ6A 3K87A 3B5MA 4N7RC 1FLMA 4F07A 3R5WA 3A6QA 3VYAA 3K86A 3ZOGA 3GASA 4YBNA 1YOAA 3VY5A 1G77A 2HQ7A 2HHZA 4HMUA 1RFEA 3U34A 2HQ9A 3NFWA 3R5YA 1USFA 1WLIA 1W3QA 3BPKA 3ZOHA 1NRGA 5JABA 3RH7A 4YWNA 5CHOA 2FG9A 2PTFA 2IABA 2X1KA 3FKHA 1WGBA 1RZ0A 3IN6A 3R5PA 1RZ1A 2E83A 3BA3A 3DNHA 2R0XA 1CI0A 4R82A 1AXJA 2ECUA 4HMXA 4ZKYA 3TGVA 1TY9A 2ASFA 3CB0A 2NR4A 3R5RA 1W9AA 4Y9IA 4IRAA 1G78A 2OU5A 1W3RA 1JNWA 3PFTA 2IG6A 2I02A 3FGEA 3R5ZA 1G79A 5CHEC 3AWHA 3SWJA 2A2JA 4Z85A 4L82A 3ZOCA 1I0SA 2RDEA 1W3PA 1USCA 3A6RA 1T9MA 3KYGA 3E4VA 2OL5A 3R5LA 4XHYA 2Q9KA 5BNCA 4QVBA 2ED4A 3ZOEA 1I0RA 2D36A 2D38A 3KYFA 2ECRA 3H96A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HMZ A;  2HTI A;  2R6V A;  4HMS A;  3EC6 A;  3VY2 A;  2VPA A;  2D5M A;  1Y30 A;  3ZOD A;  1XXO A;  1WV4 A;  2FUR A;  4HX6 A;  3ZOF A;  3DB0 A;  1XHN A;  3BNK A;  3CP3 A;  3U5W A;  2HTD A;  4HMV A;  1YLN A;  3U35 A;  2QEA A;  3AMF A;  3A20 A;  1VL7 A;  1DNL A;  4HMW A;  2ARZ A;  5ESC A;  2QCK A;  4HMT A;  1WLK A;  1W3O A;  3F7E A;  2D37 A;  2GJG A;  3K88 A;  3U0I A;  3HY8 A;  2X1J A;  2I51 A;  2RE7 A;  3DMB A;  2FHQ A;  2IML A;  4XJ2 A;  1EJE A;  1G76 A;  2AQ6 A;  3K87 A;  3B5M A;  4N7R C;  1FLM A;  4F07 A;  3R5W A;  3A6Q A;  3VYA A;  3K86 A;  3ZOG A;  3GAS A;  4YBN A;  1YOA A;  3VY5 A;  1G77 A;  2HQ7 A;  2HHZ A;  4HMU A;  1RFE A;  3U34 A;  2HQ9 A;  3NFW A;  3R5Y A;  1USF A;  1WLI A;  1W3Q A;  3BPK A;  3ZOH A;  1NRG A;  5JAB A;  3RH7 A;  4YWN A;  5CHO A;  2FG9 A;  2PTF A;  2IAB A;  2X1K A;  3FKH A;  1WGB A;  1RZ0 A;  3IN6 A;  3R5P A;  1RZ1 A;  2E83 A;  3BA3 A;  3DNH A;  2R0X A;  1CI0 A;  4R82 A;  1AXJ A;  2ECU A;  4HMX A;  4ZKY A;  3TGV A;  1TY9 A;  2ASF A;  3CB0 A;  2NR4 A;  3R5R A;  1W9A A;  4Y9I A;  4IRA A;  1G78 A;  2OU5 A;  1W3R A;  1JNW A;  3PFT A;  2IG6 A;  2I02 A;  3FGE A;  3R5Z A;  1G79 A;  5CHE C;  3AWH A;  3SWJ A;  2A2J A;  4Z85 A;  4L82 A;  3ZOC A;  1I0S A;  2RDE A;  1W3P A;  1USC A;  3A6R A;  1T9M A;  3KYG A;  3E4V A;  2OL5 A;  3R5L A;  4XHY A;  2Q9K A;  5BNC A;  4QVB A;  2ED4 A;  3ZOE A;  1I0R A;  2D36 A;  2D38 A;  3KYF A;  2ECR A;  3H96 A; 
#chains in the Genus database with same CATH topology
 3HMZ A;  2HTI A;  2R6V A;  4HMS A;  3EC6 A;  3VY2 A;  2VPA A;  2D5M A;  1Y30 A;  3ZOD A;  1XXO A;  2L1T A;  1WV4 A;  2FUR A;  4HX6 A;  3ZOF A;  3DB0 A;  1XHN A;  3BNK A;  3CP3 A;  3U5W A;  2HTD A;  4HMV A;  1YLN A;  3U35 A;  2QEA A;  3AMF A;  3A20 A;  1VL7 A;  1DNL A;  4HMW A;  2ARZ A;  5ESC A;  2QCK A;  4HMT A;  1WLK A;  1W3O A;  3F7E A;  2D37 A;  2GJG A;  2P5Z X;  3K88 A;  3U0I A;  3HY8 A;  4MTK A;  2X1J A;  2I51 A;  2RE7 A;  3DMB A;  2FHQ A;  2IML A;  4XJ2 A;  1EJE A;  1G76 A;  2AQ6 A;  3K87 A;  3B5M A;  4N7R C;  1FLM A;  4F07 A;  3R5W A;  3A6Q A;  4W64 A;  3VYA A;  3K86 A;  3ZOG A;  3GAS A;  4YBN A;  1YOA A;  3VY5 A;  1G77 A;  2HQ7 A;  2HHZ A;  4TV4 A;  4HMU A;  1RFE A;  3U34 A;  2HQ9 A;  3NFW A;  3R5Y A;  1USF A;  1WLI A;  1W3Q A;  3BPK A;  1Y12 A;  1NRG A;  3ZOH A;  5JAB A;  3RH7 A;  4YWN A;  5CHO A;  2FG9 A;  2PTF A;  2IAB A;  2X1K A;  3HE1 A;  3V4H A;  3FKH A;  1WGB A;  1RZ0 A;  2K4Q A;  3IN6 A;  3R5P A;  1RZ1 A;  2E83 A;  3BA3 A;  3DNH A;  2R0X A;  1CI0 A;  4R82 A;  1AXJ A;  2ECU A;  4UHV A;  4HMX A;  4ZKY A;  3TGV A;  1TY9 A;  2ASF A;  3CB0 A;  2NR4 A;  3R5R A;  1W9A A;  4HKH A;  4Y9I A;  4IRA A;  1G78 A;  2OU5 A;  1W3R A;  1JNW A;  3PFT A;  2IG6 A;  2I02 A;  3FGE A;  3R5Z A;  1G79 A;  5CHE C;  3AWH A;  3SWJ A;  2A2J A;  4Z85 A;  3EAA A;  4L82 A;  3ZOC A;  1I0S A;  2RDE A;  1W3P A;  1USC A;  3A6R A;  1T9M A;  3KYG A;  3E4V A;  2OL5 A;  3R5L A;  4XHY A;  2Q9K A;  5BNC A;  4QVB A;  2ED4 A;  3ZOE A;  1I0R A;  2D36 A;  2GUJ A;  2D38 A;  3KYF A;  2ECR A;  3H96 A; 
#chains in the Genus database with same CATH homology
 3HMZ A;  2HTI A;  2R6V A;  4HMS A;  3EC6 A;  3VY2 A;  2VPA A;  2D5M A;  1Y30 A;  3ZOD A;  1XXO A;  1WV4 A;  2FUR A;  4HX6 A;  3ZOF A;  3DB0 A;  1XHN A;  3BNK A;  3CP3 A;  3U5W A;  2HTD A;  4HMV A;  1YLN A;  3U35 A;  2QEA A;  3AMF A;  3A20 A;  1VL7 A;  1DNL A;  4HMW A;  2ARZ A;  5ESC A;  2QCK A;  4HMT A;  1WLK A;  1W3O A;  3F7E A;  2D37 A;  2GJG A;  3K88 A;  3U0I A;  3HY8 A;  2X1J A;  2I51 A;  2RE7 A;  3DMB A;  2FHQ A;  2IML A;  4XJ2 A;  1EJE A;  1G76 A;  2AQ6 A;  3K87 A;  3B5M A;  4N7R C;  1FLM A;  4F07 A;  3R5W A;  3A6Q A;  3VYA A;  3K86 A;  3ZOG A;  3GAS A;  4YBN A;  1YOA A;  3VY5 A;  1G77 A;  2HQ7 A;  2HHZ A;  4HMU A;  1RFE A;  3U34 A;  2HQ9 A;  3NFW A;  3R5Y A;  1USF A;  1WLI A;  1W3Q A;  3BPK A;  3ZOH A;  1NRG A;  5JAB A;  3RH7 A;  4YWN A;  5CHO A;  2FG9 A;  2PTF A;  2IAB A;  2X1K A;  3FKH A;  1WGB A;  1RZ0 A;  3IN6 A;  3R5P A;  1RZ1 A;  2E83 A;  3BA3 A;  3DNH A;  2R0X A;  1CI0 A;  4R82 A;  1AXJ A;  2ECU A;  4HMX A;  4ZKY A;  3TGV A;  1TY9 A;  2ASF A;  3CB0 A;  2NR4 A;  3R5R A;  1W9A A;  4Y9I A;  4IRA A;  1G78 A;  2OU5 A;  1W3R A;  1JNW A;  3PFT A;  2IG6 A;  2I02 A;  3FGE A;  3R5Z A;  1G79 A;  5CHE C;  3AWH A;  3SWJ A;  2A2J A;  4Z85 A;  4L82 A;  3ZOC A;  1I0S A;  2RDE A;  1W3P A;  1USC A;  3A6R A;  1T9M A;  3KYG A;  3E4V A;  2OL5 A;  3R5L A;  4XHY A;  2Q9K A;  5BNC A;  4QVB A;  2ED4 A;  3ZOE A;  1I0R A;  2D36 A;  2D38 A;  3KYF A;  2ECR A;  3H96 A; 
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