2X1JA

H71a mutant of the antibiotic resistance protein nima from deinococcus radiodurans
Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYATNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (2-5)TI2 (3-6)EMPTYTI3 (11-14)AH2 (24-33)TI8 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)TI4 (45-48)TI5 (63-66)TIV2 (62-65)S5 (85-99)S3 (67-71)S4 (78-79)TII2 (144-147)S7 (162-175)TIV3 (83-86)AH3 (125-139)TIV4 (145-148)TIV5 (146-149)AH4 (154-158)TI9 (190-193)TIV6 (191-194)TIV1 (17-20)S2 (50-62)S6 (108-123)TI6 (103-106)TII1 (140-143)Updating...
connected with : NaN
publication title Biophysical Characterization and Mutational Analysis of the Antibiotic Resistance Protein Nima from Deinococcus Radiodurans.
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Oxidoreductase
source organism Deinococcus radiodurans
total genus 45
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2010-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2x1jA00
2IABA 3HMZA 1TY9A 3VY5A 1WGBA 1EJEA 1W3PA 3IN6A 3U5WA 1CI0A 3RH7A 1T9MA 3K88A 2ED4A 2A2JA 2R0XA 2HHZA 4HMXA 1WLKA 2D5MA 3FKHA 4HMUA 2R6VA 3U34A 3R5YA 2E83A 2IMLA 1G79A 4YBNA 1NRGA 2FURA 1DNLA 2NR4A 3CB0A 1RZ1A 3H96A 5BNCA 4ZKYA 1FLMA 3ZOFA 3DMBA 3ZOEA 2X1JA 3ZODA 1YLNA 5ESCA 4Y9IA 2ECRA 2HTIA 2QCKA 3EC6A 3F7EA 3K86A 1AXJA 2FHQA 1USCA 4HMSA 1USFA 4R82A 3A6QA 3VY2A 3A6RA 5CHEC 3ZOHA 4N7RC 2HQ9A 3U35A 1WV4A 2D38A 3ZOGA 2D36A 2X1KA 1XXOA 2ECUA 3GASA 5JABA 4HMTA 3AMFA 4XJ2A 2RDEA 2IG6A 2QEAA 4QVBA 1G77A 1YOAA 3R5LA 1XHNA 3TGVA 3SWJA 3PFTA 3KYFA 4YWNA 3BNKA 1G76A 1VL7A 4L82A 1JNWA 2HQ7A 1RFEA 2RE7A 1RZ0A 4XHYA 3NFWA 1WLIA 3K87A 2OL5A 2D37A 1W9AA 2FG9A 1W3RA 3HY8A 3AWHA 3DB0A 2ASFA 1I0SA 2GJGA 2OU5A 3FGEA 3B5MA 3R5RA 3ZOCA 1W3OA 2AQ6A 1I0RA 2I02A 3KYGA 4HMVA 3VYAA 2PTFA 3BA3A 3A20A 4IRAA 3CP3A 3R5WA 1G78A 4HMWA 4Z85A 1Y30A 2HTDA 3BPKA 3U0IA 2I51A 3E4VA 3R5PA 2ARZA 3DNHA 3R5ZA 1W3QA 4F07A 2VPAA 5CHOA 2Q9KA 4HX6A
chains in the Genus database with same CATH superfamily
2IABA 3HMZA 1TY9A 3VY5A 1WGBA 1EJEA 1W3PA 3IN6A 3U5WA 1CI0A 3RH7A 1T9MA 3K88A 2ED4A 2A2JA 2R0XA 2HHZA 4TV4A 4HMXA 1WLKA 2D5MA 3FKHA 4HMUA 3HE1A 2R6VA 3U34A 3R5YA 2E83A 4W64A 2IMLA 1G79A 4YBNA 1NRGA 2FURA 1DNLA 2NR4A 3CB0A 1RZ1A 3H96A 5BNCA 4ZKYA 1FLMA 3ZOFA 3DMBA 3ZOEA 2X1JA 3ZODA 1YLNA 5ESCA 4Y9IA 2ECRA 2HTIA 2QCKA 3EC6A 3F7EA 3K86A 1AXJA 2FHQA 1USCA 4HMSA 1USFA 4R82A 3A6QA 3VY2A 3A6RA 5CHEC 3ZOHA 4N7RC 2HQ9A 3U35A 1WV4A 2D38A 3ZOGA 2D36A 2X1KA 1XXOA 2ECUA 3GASA 5JABA 4HMTA 4MTKA 2L1TA 3AMFA 4XJ2A 2RDEA 2IG6A 2QEAA 4QVBA 1G77A 1YOAA 3EAAA 3R5LA 2GUJA 1XHNA 3TGVA 3SWJA 3PFTA 3KYFA 4YWNA 1Y12A 3BNKA 1G76A 1VL7A 4L82A 1JNWA 2HQ7A 1RFEA 2RE7A 1RZ0A 4XHYA 2P5ZX 3NFWA 1WLIA 3K87A 2OL5A 2D37A 1W9AA 2FG9A 1W3RA 2K4QA 3HY8A 3AWHA 3DB0A 2ASFA 1I0SA 2GJGA 2OU5A 3FGEA 3B5MA 3R5RA 4HKHA 3ZOCA 1W3OA 2AQ6A 1I0RA 2I02A 3KYGA 4HMVA 3VYAA 2PTFA 3BA3A 3A20A 4IRAA 3CP3A 3R5WA 1G78A 4HMWA 4Z85A 1Y30A 2HTDA 3BPKA 3U0IA 2I51A 3E4VA 3V4HA 3R5PA 2ARZA 3DNHA 3R5ZA 4UHVA 1W3QA 4F07A 2VPAA 5CHOA 2Q9KA 4HX6A
chains in the Genus database with same CATH topology
2IABA 3HMZA 1TY9A 3VY5A 1WGBA 1EJEA 1W3PA 3IN6A 3U5WA 1CI0A 3RH7A 1T9MA 3K88A 2ED4A 2A2JA 2R0XA 2HHZA 4HMXA 1WLKA 2D5MA 3FKHA 4HMUA 2R6VA 3U34A 3R5YA 2E83A 2IMLA 1G79A 4YBNA 1NRGA 2FURA 1DNLA 2NR4A 3CB0A 1RZ1A 3H96A 5BNCA 4ZKYA 1FLMA 3ZOFA 3DMBA 3ZOEA 2X1JA 3ZODA 1YLNA 5ESCA 4Y9IA 2ECRA 2HTIA 2QCKA 3EC6A 3F7EA 3K86A 1AXJA 2FHQA 1USCA 4HMSA 1USFA 4R82A 3A6QA 3VY2A 3A6RA 5CHEC 3ZOHA 4N7RC 2HQ9A 3U35A 1WV4A 2D38A 3ZOGA 2D36A 2X1KA 1XXOA 2ECUA 3GASA 5JABA 4HMTA 3AMFA 4XJ2A 2RDEA 2IG6A 2QEAA 4QVBA 1G77A 1YOAA 3R5LA 1XHNA 3TGVA 3SWJA 3PFTA 3KYFA 4YWNA 3BNKA 1G76A 1VL7A 4L82A 1JNWA 2HQ7A 1RFEA 2RE7A 1RZ0A 4XHYA 3NFWA 1WLIA 3K87A 2OL5A 2D37A 1W9AA 2FG9A 1W3RA 3HY8A 3AWHA 3DB0A 2ASFA 1I0SA 2GJGA 2OU5A 3FGEA 3B5MA 3R5RA 3ZOCA 1W3OA 2AQ6A 1I0RA 2I02A 3KYGA 4HMVA 3VYAA 2PTFA 3BA3A 3A20A 4IRAA 3CP3A 3R5WA 1G78A 4HMWA 4Z85A 1Y30A 2HTDA 3BPKA 3U0IA 2I51A 3E4VA 3R5PA 2ARZA 3DNHA 3R5ZA 1W3QA 4F07A 2VPAA 5CHOA 2Q9KA 4HX6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IAB A;  3HMZ A;  1TY9 A;  3VY5 A;  1WGB A;  1EJE A;  1W3P A;  3IN6 A;  3U5W A;  1CI0 A;  3RH7 A;  1T9M A;  3K88 A;  2ED4 A;  2A2J A;  2R0X A;  2HHZ A;  4HMX A;  1WLK A;  2D5M A;  3FKH A;  4HMU A;  2R6V A;  3U34 A;  3R5Y A;  2E83 A;  2IML A;  1G79 A;  4YBN A;  1NRG A;  2FUR A;  1DNL A;  2NR4 A;  3CB0 A;  1RZ1 A;  3H96 A;  5BNC A;  4ZKY A;  1FLM A;  3ZOF A;  3DMB A;  3ZOE A;  2X1J A;  3ZOD A;  1YLN A;  5ESC A;  4Y9I A;  2ECR A;  2HTI A;  2QCK A;  3EC6 A;  3F7E A;  3K86 A;  1AXJ A;  2FHQ A;  1USC A;  4HMS A;  1USF A;  4R82 A;  3A6Q A;  3VY2 A;  3A6R A;  5CHE C;  3ZOH A;  4N7R C;  2HQ9 A;  3U35 A;  1WV4 A;  2D38 A;  3ZOG A;  2D36 A;  2X1K A;  1XXO A;  2ECU A;  3GAS A;  5JAB A;  4HMT A;  3AMF A;  4XJ2 A;  2RDE A;  2IG6 A;  2QEA A;  4QVB A;  1G77 A;  1YOA A;  3R5L A;  1XHN A;  3TGV A;  3SWJ A;  3PFT A;  3KYF A;  4YWN A;  3BNK A;  1G76 A;  1VL7 A;  4L82 A;  1JNW A;  2HQ7 A;  1RFE A;  2RE7 A;  1RZ0 A;  4XHY A;  3NFW A;  1WLI A;  3K87 A;  2OL5 A;  2D37 A;  1W9A A;  2FG9 A;  1W3R A;  3HY8 A;  3AWH A;  3DB0 A;  2ASF A;  1I0S A;  2GJG A;  2OU5 A;  3FGE A;  3B5M A;  3R5R A;  3ZOC A;  1W3O A;  2AQ6 A;  1I0R A;  2I02 A;  3KYG A;  4HMV A;  3VYA A;  2PTF A;  3BA3 A;  3A20 A;  4IRA A;  3CP3 A;  3R5W A;  1G78 A;  4HMW A;  4Z85 A;  1Y30 A;  2HTD A;  3BPK A;  3U0I A;  2I51 A;  3E4V A;  3R5P A;  2ARZ A;  3DNH A;  3R5Z A;  1W3Q A;  4F07 A;  2VPA A;  5CHO A;  2Q9K A;  4HX6 A; 
#chains in the Genus database with same CATH topology
 2IAB A;  3HMZ A;  1TY9 A;  3VY5 A;  1WGB A;  1EJE A;  1W3P A;  3IN6 A;  3U5W A;  1CI0 A;  3RH7 A;  1T9M A;  3K88 A;  2ED4 A;  2A2J A;  2R0X A;  2HHZ A;  4TV4 A;  4HMX A;  1WLK A;  2D5M A;  3FKH A;  4HMU A;  3HE1 A;  2R6V A;  3U34 A;  3R5Y A;  2E83 A;  4W64 A;  2IML A;  1G79 A;  4YBN A;  1NRG A;  2FUR A;  1DNL A;  2NR4 A;  3CB0 A;  1RZ1 A;  3H96 A;  5BNC A;  4ZKY A;  1FLM A;  3ZOF A;  3DMB A;  3ZOE A;  2X1J A;  3ZOD A;  1YLN A;  5ESC A;  4Y9I A;  2ECR A;  2HTI A;  2QCK A;  3EC6 A;  3F7E A;  3K86 A;  1AXJ A;  2FHQ A;  1USC A;  4HMS A;  1USF A;  4R82 A;  3A6Q A;  3VY2 A;  3A6R A;  5CHE C;  3ZOH A;  4N7R C;  2HQ9 A;  3U35 A;  1WV4 A;  2D38 A;  3ZOG A;  2D36 A;  2X1K A;  1XXO A;  2ECU A;  3GAS A;  5JAB A;  4HMT A;  4MTK A;  2L1T A;  3AMF A;  4XJ2 A;  2RDE A;  2IG6 A;  2QEA A;  4QVB A;  1G77 A;  1YOA A;  3EAA A;  3R5L A;  2GUJ A;  1XHN A;  3TGV A;  3SWJ A;  3PFT A;  3KYF A;  4YWN A;  1Y12 A;  3BNK A;  1G76 A;  1VL7 A;  4L82 A;  1JNW A;  2HQ7 A;  1RFE A;  2RE7 A;  1RZ0 A;  4XHY A;  2P5Z X;  3NFW A;  1WLI A;  3K87 A;  2OL5 A;  2D37 A;  1W9A A;  2FG9 A;  1W3R A;  2K4Q A;  3HY8 A;  3AWH A;  3DB0 A;  2ASF A;  1I0S A;  2GJG A;  2OU5 A;  3FGE A;  3B5M A;  3R5R A;  4HKH A;  3ZOC A;  1W3O A;  2AQ6 A;  1I0R A;  2I02 A;  3KYG A;  4HMV A;  3VYA A;  2PTF A;  3BA3 A;  3A20 A;  4IRA A;  3CP3 A;  3R5W A;  1G78 A;  4HMW A;  4Z85 A;  1Y30 A;  2HTD A;  3BPK A;  3U0I A;  2I51 A;  3E4V A;  3V4H A;  3R5P A;  2ARZ A;  3DNH A;  3R5Z A;  4UHV A;  1W3Q A;  4F07 A;  2VPA A;  5CHO A;  2Q9K A;  4HX6 A; 
#chains in the Genus database with same CATH homology
 2IAB A;  3HMZ A;  1TY9 A;  3VY5 A;  1WGB A;  1EJE A;  1W3P A;  3IN6 A;  3U5W A;  1CI0 A;  3RH7 A;  1T9M A;  3K88 A;  2ED4 A;  2A2J A;  2R0X A;  2HHZ A;  4HMX A;  1WLK A;  2D5M A;  3FKH A;  4HMU A;  2R6V A;  3U34 A;  3R5Y A;  2E83 A;  2IML A;  1G79 A;  4YBN A;  1NRG A;  2FUR A;  1DNL A;  2NR4 A;  3CB0 A;  1RZ1 A;  3H96 A;  5BNC A;  4ZKY A;  1FLM A;  3ZOF A;  3DMB A;  3ZOE A;  2X1J A;  3ZOD A;  1YLN A;  5ESC A;  4Y9I A;  2ECR A;  2HTI A;  2QCK A;  3EC6 A;  3F7E A;  3K86 A;  1AXJ A;  2FHQ A;  1USC A;  4HMS A;  1USF A;  4R82 A;  3A6Q A;  3VY2 A;  3A6R A;  5CHE C;  3ZOH A;  4N7R C;  2HQ9 A;  3U35 A;  1WV4 A;  2D38 A;  3ZOG A;  2D36 A;  2X1K A;  1XXO A;  2ECU A;  3GAS A;  5JAB A;  4HMT A;  3AMF A;  4XJ2 A;  2RDE A;  2IG6 A;  2QEA A;  4QVB A;  1G77 A;  1YOA A;  3R5L A;  1XHN A;  3TGV A;  3SWJ A;  3PFT A;  3KYF A;  4YWN A;  3BNK A;  1G76 A;  1VL7 A;  4L82 A;  1JNW A;  2HQ7 A;  1RFE A;  2RE7 A;  1RZ0 A;  4XHY A;  3NFW A;  1WLI A;  3K87 A;  2OL5 A;  2D37 A;  1W9A A;  2FG9 A;  1W3R A;  3HY8 A;  3AWH A;  3DB0 A;  2ASF A;  1I0S A;  2GJG A;  2OU5 A;  3FGE A;  3B5M A;  3R5R A;  3ZOC A;  1W3O A;  2AQ6 A;  1I0R A;  2I02 A;  3KYG A;  4HMV A;  3VYA A;  2PTF A;  3BA3 A;  3A20 A;  4IRA A;  3CP3 A;  3R5W A;  1G78 A;  4HMW A;  4Z85 A;  1Y30 A;  2HTD A;  3BPK A;  3U0I A;  2I51 A;  3E4V A;  3R5P A;  2ARZ A;  3DNH A;  3R5Z A;  1W3Q A;  4F07 A;  2VPA A;  5CHO A;  2Q9K A;  4HX6 A; 
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