2X1KA

H71s mutant of the antibiotic resistance protein nima from deinococcus radiodurans
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
215
structure length
206
Chain Sequence
SYYHHHHHHLELSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYSTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (11-14)TIV1 (17-20)S1 (36-44)TI2 (45-48)S3 (67-71)TI3 (103-106)3H2 (63-65)S2 (50-62)EMPTYTIV5 (146-149)TVIII2 (177-180)S4 (78-79)S7 (162-175)S5 (85-99)TIV2 (83-86)TIV3 (101-104)S6 (108-123)TI4 (104-107)TI7 (191-194)TI5 (183-186)AH3 (125-139)TII2 (144-147)TIV4 (145-148)TVIII1 (147-150)AH4 (154-159)TI6 (190-193)AH2 (24-33)TII1 (140-143)3H1 (3-5)Updating...
connected with : NaN
publication title Biophysical Characterization and Mutational Analysis of the Antibiotic Resistance Protein Nima from Deinococcus Radiodurans.
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Oxidoreductase
source organism Deinococcus radiodurans
total genus 49
structure length 206
sequence length 215
ec nomenclature
pdb deposition date 2010-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2x1kA00
2FHQA 3PFTA 2D38A 4QVBA 1WLIA 3CB0A 3TGVA 1DNLA 2GJGA 1VL7A 3IN6A 3KYFA 1G77A 1USCA 2A2JA 3E4VA 3R5ZA 3U34A 1W9AA 3U5WA 2ASFA 2HQ9A 3DNHA 3K86A 1G76A 1I0SA 2RDEA 3AMFA 2HTDA 1XHNA 3R5YA 3RH7A 2ARZA 1W3RA 2I51A 3ZOCA 3FKHA 2VPAA 3K87A 2HHZA 2IG6A 3ZOGA 2QEAA 4Y9IA 3A20A 5JABA 4HMUA 1NRGA 4HMTA 3U35A 2AQ6A 2D37A 1AXJA 4HX6A 3CP3A 3SWJA 3U0IA 3BA3A 1CI0A 3K88A 3ZOFA 3GASA 1W3QA 4ZKYA 3AWHA 3FGEA 4HMVA 4HMXA 2X1KA 1YOAA 1Y30A 3EC6A 1JNWA 4HMWA 1W3PA 3BPKA 3DB0A 1T9MA 3KYGA 1FLMA 3B5MA 2HQ7A 2FURA 2OL5A 4YWNA 4L82A 3DMBA 3ZOEA 5BNCA 4IRAA 3VYAA 3R5RA 3R5PA 3H96A 1G79A 3R5LA 3A6QA 3VY2A 3ZOHA 3NFWA 1WLKA 1WGBA 1WV4A 3R5WA 2FG9A 2Q9KA 1YLNA 4XJ2A 4F07A 2ECRA 2X1JA 2E83A 5ESCA 3VY5A 1RZ1A 1W3OA 2R6VA 1RFEA 2D36A 2ECUA 1EJEA 1TY9A 2R0XA 4HMSA 2OU5A 2IABA 3HY8A 4N7RC 2HTIA 1G78A 1XXOA 2ED4A 3BNKA 1I0RA 3ZODA 3HMZA 2RE7A 2D5MA 2NR4A 3A6RA 5CHOA 4YBNA 4R82A 5CHEC 4Z85A 3F7EA 1RZ0A 1USFA 2QCKA 4XHYA 2I02A 2PTFA 2IMLA
chains in the Genus database with same CATH superfamily
2FHQA 3PFTA 2D38A 4QVBA 1WLIA 3CB0A 3TGVA 1DNLA 2GJGA 1VL7A 3IN6A 3KYFA 1G77A 1USCA 2A2JA 3E4VA 3R5ZA 3U34A 1W9AA 3U5WA 2ASFA 2HQ9A 3DNHA 3K86A 1G76A 1I0SA 2RDEA 3AMFA 2HTDA 1XHNA 3R5YA 3RH7A 2ARZA 1Y12A 1W3RA 2I51A 3ZOCA 3FKHA 2VPAA 3K87A 2HHZA 2IG6A 3ZOGA 2QEAA 4Y9IA 3A20A 5JABA 2K4QA 1NRGA 4HMUA 4HMTA 3U35A 2AQ6A 3EAAA 2D37A 1AXJA 4HX6A 3CP3A 3SWJA 3U0IA 3BA3A 1CI0A 3K88A 2GUJA 3ZOFA 3GASA 1W3QA 4ZKYA 3AWHA 3FGEA 4HMVA 4MTKA 4HMXA 2X1KA 1YOAA 1Y30A 3EC6A 1JNWA 4HMWA 1W3PA 3BPKA 3DB0A 1T9MA 3KYGA 1FLMA 3B5MA 2HQ7A 2FURA 2OL5A 4YWNA 4L82A 3DMBA 3ZOEA 5BNCA 4IRAA 4W64A 3VYAA 3R5RA 3R5PA 3H96A 1G79A 3R5LA 3A6QA 3VY2A 3ZOHA 3NFWA 1WLKA 3V4HA 1WGBA 1WV4A 3R5WA 2FG9A 2Q9KA 1YLNA 4XJ2A 4F07A 2ECRA 2X1JA 2E83A 5ESCA 3VY5A 1RZ1A 4UHVA 1W3OA 2R6VA 1RFEA 2D36A 2ECUA 1EJEA 1TY9A 2R0XA 4HMSA 2OU5A 2IABA 3HY8A 4N7RC 2HTIA 1G78A 1XXOA 2ED4A 3BNKA 1I0RA 3ZODA 3HMZA 2P5ZX 2RE7A 2D5MA 2NR4A 3A6RA 5CHOA 3HE1A 4YBNA 4HKHA 4R82A 5CHEC 4Z85A 3F7EA 1RZ0A 1USFA 2QCKA 4XHYA 2I02A 2PTFA 4TV4A 2IMLA 2L1TA
chains in the Genus database with same CATH topology
2FHQA 3PFTA 2D38A 4QVBA 1WLIA 3CB0A 3TGVA 1DNLA 2GJGA 1VL7A 3IN6A 3KYFA 1G77A 1USCA 2A2JA 3E4VA 3R5ZA 3U34A 1W9AA 3U5WA 2ASFA 2HQ9A 3DNHA 3K86A 1G76A 1I0SA 2RDEA 3AMFA 2HTDA 1XHNA 3R5YA 3RH7A 2ARZA 1W3RA 2I51A 3ZOCA 3FKHA 2VPAA 3K87A 2HHZA 2IG6A 3ZOGA 2QEAA 4Y9IA 3A20A 5JABA 4HMUA 1NRGA 4HMTA 3U35A 2AQ6A 2D37A 1AXJA 4HX6A 3CP3A 3SWJA 3U0IA 3BA3A 1CI0A 3K88A 3ZOFA 3GASA 1W3QA 4ZKYA 3AWHA 3FGEA 4HMVA 4HMXA 2X1KA 1YOAA 1Y30A 3EC6A 1JNWA 4HMWA 1W3PA 3BPKA 3DB0A 1T9MA 3KYGA 1FLMA 3B5MA 2HQ7A 2FURA 2OL5A 4YWNA 4L82A 3DMBA 3ZOEA 5BNCA 4IRAA 3VYAA 3R5RA 3R5PA 3H96A 1G79A 3R5LA 3A6QA 3VY2A 3ZOHA 3NFWA 1WLKA 1WGBA 1WV4A 3R5WA 2FG9A 2Q9KA 1YLNA 4XJ2A 4F07A 2ECRA 2X1JA 2E83A 5ESCA 3VY5A 1RZ1A 1W3OA 2R6VA 1RFEA 2D36A 2ECUA 1EJEA 1TY9A 2R0XA 4HMSA 2OU5A 2IABA 3HY8A 4N7RC 2HTIA 1G78A 1XXOA 2ED4A 3BNKA 1I0RA 3ZODA 3HMZA 2RE7A 2D5MA 2NR4A 3A6RA 5CHOA 4YBNA 4R82A 5CHEC 4Z85A 3F7EA 1RZ0A 1USFA 2QCKA 4XHYA 2I02A 2PTFA 2IMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FHQ A;  3PFT A;  2D38 A;  4QVB A;  1WLI A;  3CB0 A;  3TGV A;  1DNL A;  2GJG A;  1VL7 A;  3IN6 A;  3KYF A;  1G77 A;  1USC A;  2A2J A;  3E4V A;  3R5Z A;  3U34 A;  1W9A A;  3U5W A;  2ASF A;  2HQ9 A;  3DNH A;  3K86 A;  1G76 A;  1I0S A;  2RDE A;  3AMF A;  2HTD A;  1XHN A;  3R5Y A;  3RH7 A;  2ARZ A;  1W3R A;  2I51 A;  3ZOC A;  3FKH A;  2VPA A;  3K87 A;  2HHZ A;  2IG6 A;  3ZOG A;  2QEA A;  4Y9I A;  3A20 A;  5JAB A;  4HMU A;  1NRG A;  4HMT A;  3U35 A;  2AQ6 A;  2D37 A;  1AXJ A;  4HX6 A;  3CP3 A;  3SWJ A;  3U0I A;  3BA3 A;  1CI0 A;  3K88 A;  3ZOF A;  3GAS A;  1W3Q A;  4ZKY A;  3AWH A;  3FGE A;  4HMV A;  4HMX A;  2X1K A;  1YOA A;  1Y30 A;  3EC6 A;  1JNW A;  4HMW A;  1W3P A;  3BPK A;  3DB0 A;  1T9M A;  3KYG A;  1FLM A;  3B5M A;  2HQ7 A;  2FUR A;  2OL5 A;  4YWN A;  4L82 A;  3DMB A;  3ZOE A;  5BNC A;  4IRA A;  3VYA A;  3R5R A;  3R5P A;  3H96 A;  1G79 A;  3R5L A;  3A6Q A;  3VY2 A;  3ZOH A;  3NFW A;  1WLK A;  1WGB A;  1WV4 A;  3R5W A;  2FG9 A;  2Q9K A;  1YLN A;  4XJ2 A;  4F07 A;  2ECR A;  2X1J A;  2E83 A;  5ESC A;  3VY5 A;  1RZ1 A;  1W3O A;  2R6V A;  1RFE A;  2D36 A;  2ECU A;  1EJE A;  1TY9 A;  2R0X A;  4HMS A;  2OU5 A;  2IAB A;  3HY8 A;  4N7R C;  2HTI A;  1G78 A;  1XXO A;  2ED4 A;  3BNK A;  1I0R A;  3ZOD A;  3HMZ A;  2RE7 A;  2D5M A;  2NR4 A;  3A6R A;  5CHO A;  4YBN A;  4R82 A;  5CHE C;  4Z85 A;  3F7E A;  1RZ0 A;  1USF A;  2QCK A;  4XHY A;  2I02 A;  2PTF A;  2IML A; 
#chains in the Genus database with same CATH topology
 2FHQ A;  3PFT A;  2D38 A;  4QVB A;  1WLI A;  3CB0 A;  3TGV A;  1DNL A;  2GJG A;  1VL7 A;  3IN6 A;  3KYF A;  1G77 A;  1USC A;  2A2J A;  3E4V A;  3R5Z A;  3U34 A;  1W9A A;  3U5W A;  2ASF A;  2HQ9 A;  3DNH A;  3K86 A;  1G76 A;  1I0S A;  2RDE A;  3AMF A;  2HTD A;  1XHN A;  3R5Y A;  3RH7 A;  2ARZ A;  1Y12 A;  1W3R A;  2I51 A;  3ZOC A;  3FKH A;  2VPA A;  3K87 A;  2HHZ A;  2IG6 A;  3ZOG A;  2QEA A;  4Y9I A;  3A20 A;  5JAB A;  2K4Q A;  1NRG A;  4HMU A;  4HMT A;  3U35 A;  2AQ6 A;  3EAA A;  2D37 A;  1AXJ A;  4HX6 A;  3CP3 A;  3SWJ A;  3U0I A;  3BA3 A;  1CI0 A;  3K88 A;  2GUJ A;  3ZOF A;  3GAS A;  1W3Q A;  4ZKY A;  3AWH A;  3FGE A;  4HMV A;  4MTK A;  4HMX A;  2X1K A;  1YOA A;  1Y30 A;  3EC6 A;  1JNW A;  4HMW A;  1W3P A;  3BPK A;  3DB0 A;  1T9M A;  3KYG A;  1FLM A;  3B5M A;  2HQ7 A;  2FUR A;  2OL5 A;  4YWN A;  4L82 A;  3DMB A;  3ZOE A;  5BNC A;  4IRA A;  4W64 A;  3VYA A;  3R5R A;  3R5P A;  3H96 A;  1G79 A;  3R5L A;  3A6Q A;  3VY2 A;  3ZOH A;  3NFW A;  1WLK A;  3V4H A;  1WGB A;  1WV4 A;  3R5W A;  2FG9 A;  2Q9K A;  1YLN A;  4XJ2 A;  4F07 A;  2ECR A;  2X1J A;  2E83 A;  5ESC A;  3VY5 A;  1RZ1 A;  4UHV A;  1W3O A;  2R6V A;  1RFE A;  2D36 A;  2ECU A;  1EJE A;  1TY9 A;  2R0X A;  4HMS A;  2OU5 A;  2IAB A;  3HY8 A;  4N7R C;  2HTI A;  1G78 A;  1XXO A;  2ED4 A;  3BNK A;  1I0R A;  3ZOD A;  3HMZ A;  2P5Z X;  2RE7 A;  2D5M A;  2NR4 A;  3A6R A;  5CHO A;  3HE1 A;  4YBN A;  4HKH A;  4R82 A;  5CHE C;  4Z85 A;  3F7E A;  1RZ0 A;  1USF A;  2QCK A;  4XHY A;  2I02 A;  2PTF A;  4TV4 A;  2IML A;  2L1T A; 
#chains in the Genus database with same CATH homology
 2FHQ A;  3PFT A;  2D38 A;  4QVB A;  1WLI A;  3CB0 A;  3TGV A;  1DNL A;  2GJG A;  1VL7 A;  3IN6 A;  3KYF A;  1G77 A;  1USC A;  2A2J A;  3E4V A;  3R5Z A;  3U34 A;  1W9A A;  3U5W A;  2ASF A;  2HQ9 A;  3DNH A;  3K86 A;  1G76 A;  1I0S A;  2RDE A;  3AMF A;  2HTD A;  1XHN A;  3R5Y A;  3RH7 A;  2ARZ A;  1W3R A;  2I51 A;  3ZOC A;  3FKH A;  2VPA A;  3K87 A;  2HHZ A;  2IG6 A;  3ZOG A;  2QEA A;  4Y9I A;  3A20 A;  5JAB A;  4HMU A;  1NRG A;  4HMT A;  3U35 A;  2AQ6 A;  2D37 A;  1AXJ A;  4HX6 A;  3CP3 A;  3SWJ A;  3U0I A;  3BA3 A;  1CI0 A;  3K88 A;  3ZOF A;  3GAS A;  1W3Q A;  4ZKY A;  3AWH A;  3FGE A;  4HMV A;  4HMX A;  2X1K A;  1YOA A;  1Y30 A;  3EC6 A;  1JNW A;  4HMW A;  1W3P A;  3BPK A;  3DB0 A;  1T9M A;  3KYG A;  1FLM A;  3B5M A;  2HQ7 A;  2FUR A;  2OL5 A;  4YWN A;  4L82 A;  3DMB A;  3ZOE A;  5BNC A;  4IRA A;  3VYA A;  3R5R A;  3R5P A;  3H96 A;  1G79 A;  3R5L A;  3A6Q A;  3VY2 A;  3ZOH A;  3NFW A;  1WLK A;  1WGB A;  1WV4 A;  3R5W A;  2FG9 A;  2Q9K A;  1YLN A;  4XJ2 A;  4F07 A;  2ECR A;  2X1J A;  2E83 A;  5ESC A;  3VY5 A;  1RZ1 A;  1W3O A;  2R6V A;  1RFE A;  2D36 A;  2ECU A;  1EJE A;  1TY9 A;  2R0X A;  4HMS A;  2OU5 A;  2IAB A;  3HY8 A;  4N7R C;  2HTI A;  1G78 A;  1XXO A;  2ED4 A;  3BNK A;  1I0R A;  3ZOD A;  3HMZ A;  2RE7 A;  2D5M A;  2NR4 A;  3A6R A;  5CHO A;  4YBN A;  4R82 A;  5CHE C;  4Z85 A;  3F7E A;  1RZ0 A;  1USF A;  2QCK A;  4XHY A;  2I02 A;  2PTF A;  2IML A; 
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