3EAAA

Structure of a type six secretion system protein
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
162
structure length
162
Chain Sequence
AFDTYIKLDKVDGESTDDKHKKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMSVLRVTKWMDCASVKLASAAVQGQNFPTLELEICTQAGDKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQDQNGKAGGKIGPEGWSLITNKKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (4-9)S2 (25-27)TII1 (21-24)S3 (57-61)TIV1 (9-12)TIV2 (19-22)TI1 (18-21)S4 (79-88)TIV5 (91-94)S7 (132-134)TIV4 (89-92)S5 (96-113)TIV8 (115-118)TI2 (141-144)TI3 (156-159)AH1 (66-76)S8 (154-156)S6 (123-129)Updating...
connected with : NaN
publication title Structural basis for the secretion of EvpC: a key type VI secretion system protein from Edwardsiella tarda
pubmed doi rcsb
molecule keywords EvpC
molecule tags Unknown function
source organism Edwardsiella tarda
total genus 23
structure length 162
sequence length 162
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05638 T6SS_HCP Type VI secretion system effector, Hcp
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.20 Mainly Beta Roll Pnp Oxidase; Chain A Hcp1-like 3eaaA00
3EAAA 4W64A 4HKHA 4TV4A 3V4HA 1Y12A 3HE1A
chains in the Genus database with same CATH superfamily
2ASFA 1Y30A 3ZOGA 2D38A 3R5PA 3FGEA 2Q9KA 4HKHA 3U34A 3ZOHA 3BPKA 1YOAA 3U35A 3B5MA 2D36A 2ECUA 4HMTA 1CI0A 1FLMA 3H96A 1AXJA 3ZODA 3TGVA 3GASA 3U5WA 2IABA 3A6RA 2OU5A 2E83A 2D5MA 4N7RC 2PTFA 4F07A 5CHOA 3DMBA 3IN6A 4HMUA 4W64A 2AQ6A 3BA3A 2HTDA 5BNCA 2X1JA 2IG6A 4HMXA 1RZ0A 3A6QA 3V4HA 1YLNA 2HQ7A 2P5ZX 3VY5A 2D37A 2FHQA 2HQ9A 1RFEA 3VYAA 1Y12A 3DB0A 4HX6A 4HMVA 1VL7A 2HHZA 4XJ2A 1W3RA 3R5ZA 2I51A 3HY8A 5CHEC 2L1TA 4XHYA 1NRGA 3AWHA 1T9MA 1W9AA 2QEAA 3K86A 3A20A 4HMSA 1I0RA 3CP3A 1WLIA 2FG9A 1W3PA 3KYGA 5ESCA 2K4QA 1XHNA 2HTIA 4TV4A 2X1KA 3E4VA 2A2JA 4Z85A 1TY9A 2OL5A 2RDEA 3R5RA 1WGBA 3HE1A 2I02A 4Y9IA 4IRAA 3EAAA 3ZOEA 3FKHA 2R6VA 5JABA 3R5YA 3ZOCA 1WLKA 3VY2A 4HMWA 1XXOA 1JNWA 3NFWA 2ED4A 1EJEA 3BNKA 2VPAA 3EC6A 2GUJA 2RE7A 3R5WA 2ARZA 1WV4A 2NR4A 2QCKA 4QVBA 1USFA 1W3QA 4R82A 3U0IA 1G78A 4L82A 3K88A 1RZ1A 1USCA 3PFTA 4YBNA 3HMZA 2GJGA 1G79A 4ZKYA 3K87A 2ECRA 1I0SA 2IMLA 1DNLA 2FURA 3ZOFA 3SWJA 3RH7A 1W3OA 3R5LA 3DNHA 4MTKA 3KYFA 3F7EA 2R0XA 3CB0A 4UHVA 1G77A 1G76A 3AMFA 4YWNA
chains in the Genus database with same CATH topology
3EAAA 4W64A 4HKHA 4TV4A 3V4HA 1Y12A 3HE1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EAA A;  4W64 A;  4HKH A;  4TV4 A;  3V4H A;  1Y12 A;  3HE1 A; 
#chains in the Genus database with same CATH topology
 2ASF A;  1Y30 A;  3ZOG A;  2D38 A;  3R5P A;  3FGE A;  2Q9K A;  4HKH A;  3U34 A;  3ZOH A;  3BPK A;  1YOA A;  3U35 A;  3B5M A;  2D36 A;  2ECU A;  4HMT A;  1CI0 A;  1FLM A;  3H96 A;  1AXJ A;  3ZOD A;  3TGV A;  3GAS A;  3U5W A;  2IAB A;  3A6R A;  2OU5 A;  2E83 A;  2D5M A;  4N7R C;  2PTF A;  4F07 A;  5CHO A;  3DMB A;  3IN6 A;  4HMU A;  4W64 A;  2AQ6 A;  3BA3 A;  2HTD A;  5BNC A;  2X1J A;  2IG6 A;  4HMX A;  1RZ0 A;  3A6Q A;  3V4H A;  1YLN A;  2HQ7 A;  2P5Z X;  3VY5 A;  2D37 A;  2FHQ A;  2HQ9 A;  1RFE A;  3VYA A;  1Y12 A;  3DB0 A;  4HX6 A;  4HMV A;  1VL7 A;  2HHZ A;  4XJ2 A;  1W3R A;  3R5Z A;  2I51 A;  3HY8 A;  5CHE C;  2L1T A;  4XHY A;  1NRG A;  3AWH A;  1T9M A;  1W9A A;  2QEA A;  3K86 A;  3A20 A;  4HMS A;  1I0R A;  3CP3 A;  1WLI A;  2FG9 A;  1W3P A;  3KYG A;  5ESC A;  2K4Q A;  1XHN A;  2HTI A;  4TV4 A;  2X1K A;  3E4V A;  2A2J A;  4Z85 A;  1TY9 A;  2OL5 A;  2RDE A;  3R5R A;  1WGB A;  3HE1 A;  2I02 A;  4Y9I A;  4IRA A;  3EAA A;  3ZOE A;  3FKH A;  2R6V A;  5JAB A;  3R5Y A;  3ZOC A;  1WLK A;  3VY2 A;  4HMW A;  1XXO A;  1JNW A;  3NFW A;  2ED4 A;  1EJE A;  3BNK A;  2VPA A;  3EC6 A;  2GUJ A;  2RE7 A;  3R5W A;  2ARZ A;  1WV4 A;  2NR4 A;  2QCK A;  4QVB A;  1USF A;  1W3Q A;  4R82 A;  3U0I A;  1G78 A;  4L82 A;  3K88 A;  1RZ1 A;  1USC A;  3PFT A;  4YBN A;  3HMZ A;  2GJG A;  1G79 A;  4ZKY A;  3K87 A;  2ECR A;  1I0S A;  2IML A;  1DNL A;  2FUR A;  3ZOF A;  3SWJ A;  3RH7 A;  1W3O A;  3R5L A;  3DNH A;  4MTK A;  3KYF A;  3F7E A;  2R0X A;  3CB0 A;  4UHV A;  1G77 A;  1G76 A;  3AMF A;  4YWN A; 
#chains in the Genus database with same CATH homology
 3EAA A;  4W64 A;  4HKH A;  4TV4 A;  3V4H A;  1Y12 A;  3HE1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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