3EAAA

Structure of a type six secretion system protein
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
162
structure length
162
Chain Sequence
AFDTYIKLDKVDGESTDDKHKKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMSVLRVTKWMDCASVKLASAAVQGQNFPTLELEICTQAGDKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQDQNGKAGGKIGPEGWSLITNKKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (4-9)S2 (25-27)TII1 (21-24)S3 (57-61)TIV1 (9-12)TIV2 (19-22)TI1 (18-21)S4 (79-88)TIV5 (91-94)S7 (132-134)TIV4 (89-92)S5 (96-113)TIV8 (115-118)TI2 (141-144)TI3 (156-159)AH1 (66-76)S8 (154-156)S6 (123-129)Updating...
connected with : NaN
publication title Structural basis for the secretion of EvpC: a key type VI secretion system protein from Edwardsiella tarda
pubmed doi rcsb
molecule keywords EvpC
molecule tags Unknown function
source organism Edwardsiella tarda
total genus 23
structure length 162
sequence length 162
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05638 T6SS_HCP Type VI secretion system effector, Hcp
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.20 Mainly Beta Roll Pnp Oxidase; Chain A Hcp1-like 3eaaA00
3EAAA 4HKHA 3HE1A 3V4HA 4W64A 4TV4A 1Y12A
chains in the Genus database with same CATH superfamily
3HMZA 3BA3A 3FGEA 2RDEA 3CB0A 3DB0A 4HMVA 1VL7A 2VPAA 3ZOGA 2ECRA 3NFWA 1I0SA 3R5RA 2ECUA 3F7EA 3R5WA 3A6RA 3BPKA 2E83A 1XHNA 2RE7A 3U5WA 1TY9A 3ZODA 1G78A 3KYFA 2R0XA 5BNCA 3KYGA 4HMTA 2IABA 3A6QA 3U0IA 3VY2A 5CHEC 2ARZA 4L82A 3HY8A 1WLIA 3EAAA 1DNLA 2PTFA 1EJEA 1FLMA 3IN6A 2I51A 1CI0A 4XHYA 2Q9KA 2X1JA 1I0RA 5CHOA 1Y30A 1YOAA 2D5MA 4Y9IA 3ZOCA 3SWJA 2I02A 3V4HA 3E4VA 3VYAA 3RH7A 4HMUA 2D36A 4UHVA 3R5YA 2D37A 4W64A 2FURA 1XXOA 3B5MA 4TV4A 4F07A 2X1KA 3TGVA 1WLKA 2IG6A 4R82A 2K4QA 3ZOHA 2QEAA 4HMSA 2ED4A 2IMLA 3R5ZA 4YBNA 1JNWA 4Z85A 1USCA 3U35A 4QVBA 3R5LA 1RZ1A 1G77A 3H96A 2GJGA 4MTKA 2HHZA 4N7RC 3VY5A 2P5ZX 3U34A 2FG9A 4XJ2A 2R6VA 3ZOFA 1NRGA 2OU5A 4YWNA 2GUJA 1RZ0A 3AMFA 1WV4A 1W3RA 2L1TA 3AWHA 1G76A 1W3OA 1W3PA 4HX6A 3ZOEA 1T9MA 3K88A 2HTIA 1Y12A 3GASA 4HKHA 5ESCA 2FHQA 1W3QA 3BNKA 2D38A 3DNHA 3R5PA 5JABA 2A2JA 4ZKYA 3PFTA 2ASFA 3A20A 3CP3A 3HE1A 4HMXA 4HMWA 2AQ6A 3K86A 2HQ9A 1YLNA 3FKHA 1AXJA 3K87A 1RFEA 2OL5A 3DMBA 1USFA 1WGBA 2QCKA 1W9AA 2NR4A 1G79A 2HQ7A 3EC6A 4IRAA 2HTDA
chains in the Genus database with same CATH topology
3EAAA 4HKHA 3HE1A 3V4HA 4W64A 4TV4A 1Y12A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EAA A;  4HKH A;  3HE1 A;  3V4H A;  4W64 A;  4TV4 A;  1Y12 A; 
#chains in the Genus database with same CATH topology
 3HMZ A;  3BA3 A;  3FGE A;  2RDE A;  3CB0 A;  3DB0 A;  4HMV A;  1VL7 A;  2VPA A;  3ZOG A;  2ECR A;  3NFW A;  1I0S A;  3R5R A;  2ECU A;  3F7E A;  3R5W A;  3A6R A;  3BPK A;  2E83 A;  1XHN A;  2RE7 A;  3U5W A;  1TY9 A;  3ZOD A;  1G78 A;  3KYF A;  2R0X A;  5BNC A;  3KYG A;  4HMT A;  2IAB A;  3A6Q A;  3U0I A;  3VY2 A;  5CHE C;  2ARZ A;  4L82 A;  3HY8 A;  1WLI A;  3EAA A;  1DNL A;  2PTF A;  1EJE A;  1FLM A;  3IN6 A;  2I51 A;  1CI0 A;  4XHY A;  2Q9K A;  2X1J A;  1I0R A;  5CHO A;  1Y30 A;  1YOA A;  2D5M A;  4Y9I A;  3ZOC A;  3SWJ A;  2I02 A;  3V4H A;  3E4V A;  3VYA A;  3RH7 A;  4HMU A;  2D36 A;  4UHV A;  3R5Y A;  2D37 A;  4W64 A;  2FUR A;  1XXO A;  3B5M A;  4TV4 A;  4F07 A;  2X1K A;  3TGV A;  1WLK A;  2IG6 A;  4R82 A;  2K4Q A;  3ZOH A;  2QEA A;  4HMS A;  2ED4 A;  2IML A;  3R5Z A;  4YBN A;  1JNW A;  4Z85 A;  1USC A;  3U35 A;  4QVB A;  3R5L A;  1RZ1 A;  1G77 A;  3H96 A;  2GJG A;  4MTK A;  2HHZ A;  4N7R C;  3VY5 A;  2P5Z X;  3U34 A;  2FG9 A;  4XJ2 A;  2R6V A;  3ZOF A;  1NRG A;  2OU5 A;  4YWN A;  2GUJ A;  1RZ0 A;  3AMF A;  1WV4 A;  1W3R A;  2L1T A;  3AWH A;  1G76 A;  1W3O A;  1W3P A;  4HX6 A;  3ZOE A;  1T9M A;  3K88 A;  2HTI A;  1Y12 A;  3GAS A;  4HKH A;  5ESC A;  2FHQ A;  1W3Q A;  3BNK A;  2D38 A;  3DNH A;  3R5P A;  5JAB A;  2A2J A;  4ZKY A;  3PFT A;  2ASF A;  3A20 A;  3CP3 A;  3HE1 A;  4HMX A;  4HMW A;  2AQ6 A;  3K86 A;  2HQ9 A;  1YLN A;  3FKH A;  1AXJ A;  3K87 A;  1RFE A;  2OL5 A;  3DMB A;  1USF A;  1WGB A;  2QCK A;  1W9A A;  2NR4 A;  1G79 A;  2HQ7 A;  3EC6 A;  4IRA A;  2HTD A; 
#chains in the Genus database with same CATH homology
 3EAA A;  4HKH A;  3HE1 A;  3V4H A;  4W64 A;  4TV4 A;  1Y12 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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