3EAAA

Structure of a type six secretion system protein
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
162
structure length
162
Chain Sequence
AFDTYIKLDKVDGESTDDKHKKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMSVLRVTKWMDCASVKLASAAVQGQNFPTLELEICTQAGDKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQDQNGKAGGKIGPEGWSLITNKKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (4-9)S2 (25-27)TII1 (21-24)S3 (57-61)TIV1 (9-12)TIV2 (19-22)TI1 (18-21)S4 (79-88)TIV5 (91-94)S7 (132-134)TIV4 (89-92)S5 (96-113)TIV8 (115-118)TI2 (141-144)TI3 (156-159)AH1 (66-76)S8 (154-156)S6 (123-129)Updating...
connected with : NaN
publication title Structural basis for the secretion of EvpC: a key type VI secretion system protein from Edwardsiella tarda
pubmed doi rcsb
molecule keywords EvpC
molecule tags Unknown function
source organism Edwardsiella tarda
total genus 23
structure length 162
sequence length 162
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05638 T6SS_HCP Type VI secretion system effector, Hcp
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.20 Mainly Beta Roll Pnp Oxidase; Chain A Hcp1-like 3eaaA00
3V4HA 1Y12A 4W64A 3HE1A 3EAAA 4TV4A 4HKHA
chains in the Genus database with same CATH superfamily
4HX6A 1AXJA 2VPAA 2HTDA 4YBNA 3U34A 3U5WA 3SWJA 3FGEA 1I0SA 2ED4A 3ZOFA 2D5MA 2ASFA 4Y9IA 3K87A 1G76A 1T9MA 3CP3A 4HMWA 2I51A 3R5YA 5BNCA 1RZ1A 3F7EA 4IRAA 1WV4A 2OL5A 2GUJA 3U0IA 3V4HA 2X1JA 2NR4A 1W3QA 3EC6A 1Y30A 4ZKYA 4HMXA 4TV4A 3KYGA 5ESCA 3ZOGA 3R5PA 3ZODA 4HMVA 1XXOA 3K88A 1WGBA 1YLNA 3CB0A 1RFEA 3K86A 2QCKA 3GASA 2IABA 2K4QA 3R5RA 2GJGA 2D36A 2I02A 4YWNA 4F07A 4L82A 1Y12A 4Z85A 2A2JA 2HQ7A 4QVBA 3BA3A 2FURA 3E4VA 3AMFA 3H96A 1W3PA 1RZ0A 2RDEA 2QEAA 1USCA 2FHQA 3AWHA 4HMSA 1EJEA 3A6QA 3U35A 2ECRA 4HKHA 3ZOEA 4XHYA 5JABA 4UHVA 1XHNA 4HMUA 4XJ2A 3VYAA 1G79A 2R6VA 1DNLA 1NRGA 2RE7A 5CHOA 2R0XA 3A6RA 1G78A 3IN6A 1YOAA 3R5ZA 2IG6A 3R5LA 3FKHA 2L1TA 4HMTA 4MTKA 3A20A 3TGVA 2P5ZX 1W3OA 3EAAA 3VY5A 2HTIA 3RH7A 2X1KA 1G77A 2OU5A 3BPKA 2FG9A 2IMLA 1FLMA 1I0RA 1VL7A 3HE1A 1W9AA 2Q9KA 3DNHA 2E83A 3ZOCA 1CI0A 3HY8A 1WLIA 2AQ6A 5CHEC 3PFTA 3DB0A 1WLKA 3ZOHA 1TY9A 1W3RA 1JNWA 3BNKA 4R82A 2HHZA 3R5WA 4N7RC 3VY2A 2D37A 3NFWA 3HMZA 4W64A 3KYFA 3B5MA 2D38A 2HQ9A 2ECUA 1USFA 2PTFA 2ARZA 3DMBA
chains in the Genus database with same CATH topology
3V4HA 1Y12A 4W64A 3HE1A 3EAAA 4TV4A 4HKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V4H A;  1Y12 A;  4W64 A;  3HE1 A;  3EAA A;  4TV4 A;  4HKH A; 
#chains in the Genus database with same CATH topology
 4HX6 A;  1AXJ A;  2VPA A;  2HTD A;  4YBN A;  3U34 A;  3U5W A;  3SWJ A;  3FGE A;  1I0S A;  2ED4 A;  3ZOF A;  2D5M A;  2ASF A;  4Y9I A;  3K87 A;  1G76 A;  1T9M A;  3CP3 A;  4HMW A;  2I51 A;  3R5Y A;  5BNC A;  1RZ1 A;  3F7E A;  4IRA A;  1WV4 A;  2OL5 A;  2GUJ A;  3U0I A;  3V4H A;  2X1J A;  2NR4 A;  1W3Q A;  3EC6 A;  1Y30 A;  4ZKY A;  4HMX A;  4TV4 A;  3KYG A;  5ESC A;  3ZOG A;  3R5P A;  3ZOD A;  4HMV A;  1XXO A;  3K88 A;  1WGB A;  1YLN A;  3CB0 A;  1RFE A;  3K86 A;  2QCK A;  3GAS A;  2IAB A;  2K4Q A;  3R5R A;  2GJG A;  2D36 A;  2I02 A;  4YWN A;  4F07 A;  4L82 A;  1Y12 A;  4Z85 A;  2A2J A;  2HQ7 A;  4QVB A;  3BA3 A;  2FUR A;  3E4V A;  3AMF A;  3H96 A;  1W3P A;  1RZ0 A;  2RDE A;  2QEA A;  1USC A;  2FHQ A;  3AWH A;  4HMS A;  1EJE A;  3A6Q A;  3U35 A;  2ECR A;  4HKH A;  3ZOE A;  4XHY A;  5JAB A;  4UHV A;  1XHN A;  4HMU A;  4XJ2 A;  3VYA A;  1G79 A;  2R6V A;  1DNL A;  1NRG A;  2RE7 A;  5CHO A;  2R0X A;  3A6R A;  1G78 A;  3IN6 A;  1YOA A;  3R5Z A;  2IG6 A;  3R5L A;  3FKH A;  2L1T A;  4HMT A;  4MTK A;  3A20 A;  3TGV A;  2P5Z X;  1W3O A;  3EAA A;  3VY5 A;  2HTI A;  3RH7 A;  2X1K A;  1G77 A;  2OU5 A;  3BPK A;  2FG9 A;  2IML A;  1FLM A;  1I0R A;  1VL7 A;  3HE1 A;  1W9A A;  2Q9K A;  3DNH A;  2E83 A;  3ZOC A;  1CI0 A;  3HY8 A;  1WLI A;  2AQ6 A;  5CHE C;  3PFT A;  3DB0 A;  1WLK A;  3ZOH A;  1TY9 A;  1W3R A;  1JNW A;  3BNK A;  4R82 A;  2HHZ A;  3R5W A;  4N7R C;  3VY2 A;  2D37 A;  3NFW A;  3HMZ A;  4W64 A;  3KYF A;  3B5M A;  2D38 A;  2HQ9 A;  2ECU A;  1USF A;  2PTF A;  2ARZ A;  3DMB A; 
#chains in the Genus database with same CATH homology
 3V4H A;  1Y12 A;  4W64 A;  3HE1 A;  3EAA A;  4TV4 A;  4HKH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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