3HY8A

Crystal structure of human pyridoxine 5'-phosphate oxidase r229w mutant
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
214
structure length
211
Chain Sequence
FEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDWIVFRRGLPTPLGPMTHRGEEDWLYERLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (206-211)AH1 (58-71)AH4 (163-171)S3 (101-103)TI1 (72-75)TI2 (77-80)TVIII1 (75-78)S2 (91-98)TII1 (173-176)S4 (106-112)AH3 (151-159)TI3 (103-106)AH2 (116-123)S6 (138-148)S5 (126-133)3H1 (134-136)AH5 (181-195)TIV2 (195-198)S1 (80-87)TIV1 (87-90)TI4 (112-115)O1 (124-126)TI5 (203-206)Updating...
connected with : NaN
publication title Molecular basis of reduced pyridoxine 5'-phosphate oxidase catalytic activity in neonatal epileptic encephalopathy disorder
pubmed doi rcsb
molecule keywords Pyridoxine-5'-phosphate oxidase
molecule tags Oxidoreductase
source organism Homo sapiens
total genus 52
structure length 211
sequence length 214
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2009-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3hy8A00
3U34A 4F07A 1USCA 4HMWA 3IN6A 4XHYA 4HMXA 1FLMA 3DB0A 3PFTA 1G76A 2HTDA 3GASA 4HMTA 1WV4A 4QVBA 2E83A 2ECUA 2RE7A 1G77A 3K87A 4IRAA 2R6VA 1W3QA 2PTFA 2D36A 3DMBA 3R5YA 3FKHA 1WGBA 1I0RA 2ASFA 1I0SA 4Z85A 1YOAA 3R5ZA 2IG6A 3BA3A 3HY8A 1EJEA 4HMUA 3KYFA 3DNHA 3R5LA 3ZOHA 3U35A 2OL5A 2R0XA 2I02A 3ZOGA 1T9MA 4HX6A 4R82A 3A20A 1RZ1A 3TGVA 3AWHA 4YBNA 3K86A 1WLIA 2IABA 2HQ9A 3H96A 4HMSA 2ARZA 2D38A 5ESCA 2D5MA 3ZOCA 1RZ0A 1USFA 1XXOA 2ED4A 2NR4A 3E4VA 2QCKA 3NFWA 3R5RA 1CI0A 1G79A 2GJGA 2ECRA 3KYGA 2FG9A 2D37A 2AQ6A 3ZOFA 3K88A 3R5PA 4YWNA 5JABA 3FGEA 1Y30A 2IMLA 1DNLA 3VY5A 2A2JA 3R5WA 4ZKYA 3A6RA 3BNKA 3SWJA 3HMZA 1JNWA 2QEAA 4HMVA 2HHZA 3RH7A 3U0IA 1YLNA 4XJ2A 2HQ7A 1RFEA 1WLKA 1NRGA 3F7EA 4N7RC 3U5WA 3AMFA 4Y9IA 3CP3A 1W3RA 2FURA 5CHOA 1W3PA 3VY2A 1AXJA 1W9AA 2OU5A 3BPKA 4L82A 3B5MA 2X1KA 3ZODA 3VYAA 3EC6A 3ZOEA 1G78A 2HTIA 2RDEA 1W3OA 3CB0A 2X1JA 1VL7A 2VPAA 1TY9A 3A6QA 5BNCA 2FHQA 2I51A 1XHNA 5CHEC 2Q9KA
chains in the Genus database with same CATH superfamily
3U34A 4F07A 1USCA 4HMWA 3IN6A 3V4HA 4HMXA 4XHYA 1FLMA 3DB0A 3PFTA 1G76A 2HTDA 3GASA 4HMTA 1WV4A 4QVBA 2E83A 2ECUA 2RE7A 1G77A 3K87A 4IRAA 2R6VA 4HKHA 1W3QA 2PTFA 2D36A 3DMBA 3R5YA 3FKHA 1WGBA 1I0RA 2ASFA 1I0SA 4Z85A 1YOAA 3R5ZA 2IG6A 3BA3A 3HY8A 1EJEA 4HMUA 3KYFA 3DNHA 2L1TA 3R5LA 4UHVA 3EAAA 3ZOHA 4TV4A 3U35A 2OL5A 2R0XA 2I02A 3ZOGA 1T9MA 4HX6A 4R82A 1Y12A 3A20A 1RZ1A 3TGVA 4MTKA 3AWHA 4YBNA 3K86A 1WLIA 2IABA 2HQ9A 3H96A 4HMSA 2ARZA 2D38A 5ESCA 2D5MA 3ZOCA 1RZ0A 1USFA 1XXOA 2ED4A 2NR4A 3E4VA 2QCKA 3NFWA 3R5RA 1CI0A 2GUJA 1G79A 2GJGA 2ECRA 3KYGA 2FG9A 2D37A 2AQ6A 3ZOFA 3K88A 3R5PA 4YWNA 5JABA 3FGEA 1Y30A 2IMLA 1DNLA 2K4QA 3VY5A 2A2JA 3R5WA 4ZKYA 3A6RA 3BNKA 3SWJA 3HMZA 1JNWA 2QEAA 2P5ZX 4HMVA 2HHZA 3RH7A 3U0IA 1YLNA 4XJ2A 2HQ7A 1RFEA 1WLKA 1NRGA 3F7EA 4N7RC 3U5WA 3AMFA 4Y9IA 3CP3A 1W3RA 2FURA 5CHOA 1W3PA 3VY2A 1AXJA 1W9AA 2OU5A 4W64A 3BPKA 4L82A 3B5MA 2X1KA 3ZODA 3VYAA 3EC6A 3ZOEA 1G78A 2HTIA 2RDEA 1W3OA 3CB0A 2X1JA 2VPAA 1VL7A 1TY9A 3A6QA 3HE1A 5BNCA 2FHQA 2I51A 1XHNA 5CHEC 2Q9KA
chains in the Genus database with same CATH topology
3U34A 4F07A 1USCA 4HMWA 3IN6A 4XHYA 4HMXA 1FLMA 3DB0A 3PFTA 1G76A 2HTDA 3GASA 4HMTA 1WV4A 4QVBA 2E83A 2ECUA 2RE7A 1G77A 3K87A 4IRAA 2R6VA 1W3QA 2PTFA 2D36A 3DMBA 3R5YA 3FKHA 1WGBA 1I0RA 2ASFA 1I0SA 4Z85A 1YOAA 3R5ZA 2IG6A 3BA3A 3HY8A 1EJEA 4HMUA 3KYFA 3DNHA 3R5LA 3ZOHA 3U35A 2OL5A 2R0XA 2I02A 3ZOGA 1T9MA 4HX6A 4R82A 3A20A 1RZ1A 3TGVA 3AWHA 4YBNA 3K86A 1WLIA 2IABA 2HQ9A 3H96A 4HMSA 2ARZA 2D38A 5ESCA 2D5MA 3ZOCA 1RZ0A 1USFA 1XXOA 2ED4A 2NR4A 3E4VA 2QCKA 3NFWA 3R5RA 1CI0A 1G79A 2GJGA 2ECRA 3KYGA 2FG9A 2D37A 2AQ6A 3ZOFA 3K88A 3R5PA 4YWNA 5JABA 3FGEA 1Y30A 2IMLA 1DNLA 3VY5A 2A2JA 3R5WA 4ZKYA 3A6RA 3BNKA 3SWJA 3HMZA 1JNWA 2QEAA 4HMVA 2HHZA 3RH7A 3U0IA 1YLNA 4XJ2A 2HQ7A 1RFEA 1WLKA 1NRGA 3F7EA 4N7RC 3U5WA 3AMFA 4Y9IA 3CP3A 1W3RA 2FURA 5CHOA 1W3PA 3VY2A 1AXJA 1W9AA 2OU5A 3BPKA 4L82A 3B5MA 2X1KA 3ZODA 3VYAA 3EC6A 3ZOEA 1G78A 2HTIA 2RDEA 1W3OA 3CB0A 2X1JA 1VL7A 2VPAA 1TY9A 3A6QA 5BNCA 2FHQA 2I51A 1XHNA 5CHEC 2Q9KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U34 A;  4F07 A;  1USC A;  4HMW A;  3IN6 A;  4XHY A;  4HMX A;  1FLM A;  3DB0 A;  3PFT A;  1G76 A;  2HTD A;  3GAS A;  4HMT A;  1WV4 A;  4QVB A;  2E83 A;  2ECU A;  2RE7 A;  1G77 A;  3K87 A;  4IRA A;  2R6V A;  1W3Q A;  2PTF A;  2D36 A;  3DMB A;  3R5Y A;  3FKH A;  1WGB A;  1I0R A;  2ASF A;  1I0S A;  4Z85 A;  1YOA A;  3R5Z A;  2IG6 A;  3BA3 A;  3HY8 A;  1EJE A;  4HMU A;  3KYF A;  3DNH A;  3R5L A;  3ZOH A;  3U35 A;  2OL5 A;  2R0X A;  2I02 A;  3ZOG A;  1T9M A;  4HX6 A;  4R82 A;  3A20 A;  1RZ1 A;  3TGV A;  3AWH A;  4YBN A;  3K86 A;  1WLI A;  2IAB A;  2HQ9 A;  3H96 A;  4HMS A;  2ARZ A;  2D38 A;  5ESC A;  2D5M A;  3ZOC A;  1RZ0 A;  1USF A;  1XXO A;  2ED4 A;  2NR4 A;  3E4V A;  2QCK A;  3NFW A;  3R5R A;  1CI0 A;  1G79 A;  2GJG A;  2ECR A;  3KYG A;  2FG9 A;  2D37 A;  2AQ6 A;  3ZOF A;  3K88 A;  3R5P A;  4YWN A;  5JAB A;  3FGE A;  1Y30 A;  2IML A;  1DNL A;  3VY5 A;  2A2J A;  3R5W A;  4ZKY A;  3A6R A;  3BNK A;  3SWJ A;  3HMZ A;  1JNW A;  2QEA A;  4HMV A;  2HHZ A;  3RH7 A;  3U0I A;  1YLN A;  4XJ2 A;  2HQ7 A;  1RFE A;  1WLK A;  1NRG A;  3F7E A;  4N7R C;  3U5W A;  3AMF A;  4Y9I A;  3CP3 A;  1W3R A;  2FUR A;  5CHO A;  1W3P A;  3VY2 A;  1AXJ A;  1W9A A;  2OU5 A;  3BPK A;  4L82 A;  3B5M A;  2X1K A;  3ZOD A;  3VYA A;  3EC6 A;  3ZOE A;  1G78 A;  2HTI A;  2RDE A;  1W3O A;  3CB0 A;  2X1J A;  1VL7 A;  2VPA A;  1TY9 A;  3A6Q A;  5BNC A;  2FHQ A;  2I51 A;  1XHN A;  5CHE C;  2Q9K A; 
#chains in the Genus database with same CATH topology
 3U34 A;  4F07 A;  1USC A;  4HMW A;  3IN6 A;  3V4H A;  4HMX A;  4XHY A;  1FLM A;  3DB0 A;  3PFT A;  1G76 A;  2HTD A;  3GAS A;  4HMT A;  1WV4 A;  4QVB A;  2E83 A;  2ECU A;  2RE7 A;  1G77 A;  3K87 A;  4IRA A;  2R6V A;  4HKH A;  1W3Q A;  2PTF A;  2D36 A;  3DMB A;  3R5Y A;  3FKH A;  1WGB A;  1I0R A;  2ASF A;  1I0S A;  4Z85 A;  1YOA A;  3R5Z A;  2IG6 A;  3BA3 A;  3HY8 A;  1EJE A;  4HMU A;  3KYF A;  3DNH A;  2L1T A;  3R5L A;  4UHV A;  3EAA A;  3ZOH A;  4TV4 A;  3U35 A;  2OL5 A;  2R0X A;  2I02 A;  3ZOG A;  1T9M A;  4HX6 A;  4R82 A;  1Y12 A;  3A20 A;  1RZ1 A;  3TGV A;  4MTK A;  3AWH A;  4YBN A;  3K86 A;  1WLI A;  2IAB A;  2HQ9 A;  3H96 A;  4HMS A;  2ARZ A;  2D38 A;  5ESC A;  2D5M A;  3ZOC A;  1RZ0 A;  1USF A;  1XXO A;  2ED4 A;  2NR4 A;  3E4V A;  2QCK A;  3NFW A;  3R5R A;  1CI0 A;  2GUJ A;  1G79 A;  2GJG A;  2ECR A;  3KYG A;  2FG9 A;  2D37 A;  2AQ6 A;  3ZOF A;  3K88 A;  3R5P A;  4YWN A;  5JAB A;  3FGE A;  1Y30 A;  2IML A;  1DNL A;  2K4Q A;  3VY5 A;  2A2J A;  3R5W A;  4ZKY A;  3A6R A;  3BNK A;  3SWJ A;  3HMZ A;  1JNW A;  2QEA A;  2P5Z X;  4HMV A;  2HHZ A;  3RH7 A;  3U0I A;  1YLN A;  4XJ2 A;  2HQ7 A;  1RFE A;  1WLK A;  1NRG A;  3F7E A;  4N7R C;  3U5W A;  3AMF A;  4Y9I A;  3CP3 A;  1W3R A;  2FUR A;  5CHO A;  1W3P A;  3VY2 A;  1AXJ A;  1W9A A;  2OU5 A;  4W64 A;  3BPK A;  4L82 A;  3B5M A;  2X1K A;  3ZOD A;  3VYA A;  3EC6 A;  3ZOE A;  1G78 A;  2HTI A;  2RDE A;  1W3O A;  3CB0 A;  2X1J A;  2VPA A;  1VL7 A;  1TY9 A;  3A6Q A;  3HE1 A;  5BNC A;  2FHQ A;  2I51 A;  1XHN A;  5CHE C;  2Q9K A; 
#chains in the Genus database with same CATH homology
 3U34 A;  4F07 A;  1USC A;  4HMW A;  3IN6 A;  4XHY A;  4HMX A;  1FLM A;  3DB0 A;  3PFT A;  1G76 A;  2HTD A;  3GAS A;  4HMT A;  1WV4 A;  4QVB A;  2E83 A;  2ECU A;  2RE7 A;  1G77 A;  3K87 A;  4IRA A;  2R6V A;  1W3Q A;  2PTF A;  2D36 A;  3DMB A;  3R5Y A;  3FKH A;  1WGB A;  1I0R A;  2ASF A;  1I0S A;  4Z85 A;  1YOA A;  3R5Z A;  2IG6 A;  3BA3 A;  3HY8 A;  1EJE A;  4HMU A;  3KYF A;  3DNH A;  3R5L A;  3ZOH A;  3U35 A;  2OL5 A;  2R0X A;  2I02 A;  3ZOG A;  1T9M A;  4HX6 A;  4R82 A;  3A20 A;  1RZ1 A;  3TGV A;  3AWH A;  4YBN A;  3K86 A;  1WLI A;  2IAB A;  2HQ9 A;  3H96 A;  4HMS A;  2ARZ A;  2D38 A;  5ESC A;  2D5M A;  3ZOC A;  1RZ0 A;  1USF A;  1XXO A;  2ED4 A;  2NR4 A;  3E4V A;  2QCK A;  3NFW A;  3R5R A;  1CI0 A;  1G79 A;  2GJG A;  2ECR A;  3KYG A;  2FG9 A;  2D37 A;  2AQ6 A;  3ZOF A;  3K88 A;  3R5P A;  4YWN A;  5JAB A;  3FGE A;  1Y30 A;  2IML A;  1DNL A;  3VY5 A;  2A2J A;  3R5W A;  4ZKY A;  3A6R A;  3BNK A;  3SWJ A;  3HMZ A;  1JNW A;  2QEA A;  4HMV A;  2HHZ A;  3RH7 A;  3U0I A;  1YLN A;  4XJ2 A;  2HQ7 A;  1RFE A;  1WLK A;  1NRG A;  3F7E A;  4N7R C;  3U5W A;  3AMF A;  4Y9I A;  3CP3 A;  1W3R A;  2FUR A;  5CHO A;  1W3P A;  3VY2 A;  1AXJ A;  1W9A A;  2OU5 A;  3BPK A;  4L82 A;  3B5M A;  2X1K A;  3ZOD A;  3VYA A;  3EC6 A;  3ZOE A;  1G78 A;  2HTI A;  2RDE A;  1W3O A;  3CB0 A;  2X1J A;  1VL7 A;  2VPA A;  1TY9 A;  3A6Q A;  5BNC A;  2FHQ A;  2I51 A;  1XHN A;  5CHE C;  2Q9K A; 
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