The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
37
|
sequence length |
156
|
structure length |
156
|
Chain Sequence |
DLSPTSLREAFGHFPSGVIAIAAEVDGTRVGLAASTFVPVSLEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGEAHDTAARTLAAKTGDRFAGLETESRDSGAVFINGTSVWLESAIEQLVPAGDHTIVVLRVSDIVINEAVPPIVFHRSAFRKLG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The flavin reductase DSZD from a desulfurizing mycobacterium goodii strain: systemic manipulation and investigation based on the crystal structure
rcsb |
| molecule keywords |
Flavin reductase
|
| molecule tags |
Oxidoreductase
|
| source organism |
Mycobacterium goodii
|
| total genus |
37
|
| structure length |
156
|
| sequence length |
156
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.5.1.29: Transferred entry: 1.5.1.38, 1.5.1.39 and 1.5.1.41. |
| pdb deposition date | 2010-10-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01613 | Flavin_Reduct | Flavin reductase like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Pnp Oxidase; Chain A | Electron Transport, Fmn-binding Protein; Chain A |
#chains in the Genus database with same CATH superfamily 4Y9I A; 3F7E A; 2Q9K A; 1W3P A; 4HX6 A; 3CP3 A; 3PFT A; 5ESC A; 2X1J A; 3FKH A; 1WLK A; 3DNH A; 1WLI A; 1G78 A; 2ASF A; 1W3Q A; 3R5R A; 4R82 A; 2FG9 A; 2VPA A; 3ZOE A; 2I51 A; 2A2J A; 2D36 A; 2HTI A; 1T9M A; 3SWJ A; 1FLM A; 4XJ2 A; 3U0I A; 2HTD A; 2R0X A; 2RE7 A; 2FUR A; 2D38 A; 2ARZ A; 4YBN A; 3U34 A; 2FHQ A; 3AWH A; 3IN6 A; 3HMZ A; 2E83 A; 1WGB A; 3CB0 A; 3NFW A; 4HMW A; 2IG6 A; 3FGE A; 1I0S A; 4IRA A; 4Z85 A; 3A6R A; 1USF A; 2OL5 A; 3R5P A; 4HMS A; 1CI0 A; 3K86 A; 1NRG A; 1VL7 A; 2QCK A; 3R5Z A; 4HMX A; 3DMB A; 3VY2 A; 3R5Y A; 3BPK A; 1RFE A; 3ZOG A; 5BNC A; 3R5L A; 2RDE A; 2QEA A; 1AXJ A; 1RZ0 A; 3U35 A; 1YOA A; 4QVB A; 1DNL A; 2D5M A; 1WV4 A; 3K88 A; 1G76 A; 4XHY A; 1RZ1 A; 2I02 A; 2X1K A; 3EC6 A; 2ED4 A; 3HY8 A; 2NR4 A; 3ZOF A; 2ECU A; 3BA3 A; 3VY5 A; 2ECR A; 3A20 A; 3A6Q A; 3RH7 A; 3H96 A; 3ZOH A; 1JNW A; 3U5W A; 1G77 A; 1YLN A; 5JAB A; 2OU5 A; 3ZOD A; 4ZKY A; 4HMT A; 2PTF A; 3GAS A; 1W9A A; 5CHO A; 3B5M A; 3TGV A; 1Y30 A; 3AMF A; 3DB0 A; 2IML A; 2HQ7 A; 4F07 A; 2IAB A; 1I0R A; 2R6V A; 5CHE C; 1G79 A; 1W3O A; 4L82 A; 1XXO A; 4YWN A; 4HMV A; 3ZOC A; 3KYF A; 1USC A; 3R5W A; 2HHZ A; 4HMU A; 3E4V A; 1TY9 A; 4N7R C; 3KYG A; 2GJG A; 3BNK A; 2AQ6 A; 1EJE A; 1W3R A; 3K87 A; 3VYA A; 1XHN A; 2HQ9 A; 2D37 A; #chains in the Genus database with same CATH topology 4Y9I A; 3F7E A; 2Q9K A; 1W3P A; 4HX6 A; 3CP3 A; 3PFT A; 5ESC A; 2X1J A; 3FKH A; 1WLK A; 3DNH A; 1WLI A; 1G78 A; 2ASF A; 1W3Q A; 3R5R A; 4R82 A; 2FG9 A; 2VPA A; 3ZOE A; 2I51 A; 2A2J A; 2D36 A; 2HTI A; 1T9M A; 3SWJ A; 1FLM A; 4XJ2 A; 3U0I A; 2P5Z X; 2HTD A; 2R0X A; 2RE7 A; 2FUR A; 2D38 A; 2ARZ A; 4YBN A; 3U34 A; 2FHQ A; 3AWH A; 3IN6 A; 3HMZ A; 2E83 A; 1WGB A; 3CB0 A; 3NFW A; 4HMW A; 4UHV A; 2IG6 A; 3FGE A; 4W64 A; 1I0S A; 4IRA A; 4Z85 A; 3A6R A; 1USF A; 2OL5 A; 2L1T A; 3HE1 A; 3R5P A; 4HMS A; 1CI0 A; 3K86 A; 1NRG A; 1VL7 A; 2QCK A; 3R5Z A; 4HMX A; 3DMB A; 3VY2 A; 3R5Y A; 3BPK A; 1RFE A; 3ZOG A; 2GUJ A; 4HKH A; 5BNC A; 3R5L A; 2RDE A; 2QEA A; 1AXJ A; 1RZ0 A; 3U35 A; 1YOA A; 4QVB A; 4MTK A; 1DNL A; 2D5M A; 1WV4 A; 3K88 A; 1G76 A; 4XHY A; 1RZ1 A; 2I02 A; 2X1K A; 3EC6 A; 2ED4 A; 3HY8 A; 2NR4 A; 3ZOF A; 2ECU A; 3BA3 A; 3VY5 A; 2ECR A; 3A20 A; 3A6Q A; 3RH7 A; 3H96 A; 3ZOH A; 1JNW A; 3U5W A; 1G77 A; 1YLN A; 5JAB A; 2OU5 A; 3ZOD A; 4ZKY A; 4HMT A; 2PTF A; 3GAS A; 1W9A A; 5CHO A; 3B5M A; 3TGV A; 1Y30 A; 3AMF A; 4TV4 A; 3DB0 A; 3V4H A; 2IML A; 2HQ7 A; 4F07 A; 1Y12 A; 2IAB A; 1I0R A; 2R6V A; 5CHE C; 1G79 A; 1W3O A; 4L82 A; 1XXO A; 4YWN A; 4HMV A; 3ZOC A; 3KYF A; 1USC A; 3R5W A; 2HHZ A; 4HMU A; 3E4V A; 1TY9 A; 4N7R C; 3EAA A; 3KYG A; 2GJG A; 3BNK A; 2AQ6 A; 1EJE A; 1W3R A; 3K87 A; 3VYA A; 1XHN A; 2HQ9 A; 2K4Q A; 2D37 A; #chains in the Genus database with same CATH homology 4Y9I A; 3F7E A; 2Q9K A; 1W3P A; 4HX6 A; 3CP3 A; 3PFT A; 5ESC A; 2X1J A; 3FKH A; 1WLK A; 3DNH A; 1WLI A; 1G78 A; 2ASF A; 1W3Q A; 3R5R A; 4R82 A; 2FG9 A; 2VPA A; 3ZOE A; 2I51 A; 2A2J A; 2D36 A; 2HTI A; 1T9M A; 3SWJ A; 1FLM A; 4XJ2 A; 3U0I A; 2HTD A; 2R0X A; 2RE7 A; 2FUR A; 2D38 A; 2ARZ A; 4YBN A; 3U34 A; 2FHQ A; 3AWH A; 3IN6 A; 3HMZ A; 2E83 A; 1WGB A; 3CB0 A; 3NFW A; 4HMW A; 2IG6 A; 3FGE A; 1I0S A; 4IRA A; 4Z85 A; 3A6R A; 1USF A; 2OL5 A; 3R5P A; 4HMS A; 1CI0 A; 3K86 A; 1NRG A; 1VL7 A; 2QCK A; 3R5Z A; 4HMX A; 3DMB A; 3VY2 A; 3R5Y A; 3BPK A; 1RFE A; 3ZOG A; 5BNC A; 3R5L A; 2RDE A; 2QEA A; 1AXJ A; 1RZ0 A; 3U35 A; 1YOA A; 4QVB A; 1DNL A; 2D5M A; 1WV4 A; 3K88 A; 1G76 A; 4XHY A; 1RZ1 A; 2I02 A; 2X1K A; 3EC6 A; 2ED4 A; 3HY8 A; 2NR4 A; 3ZOF A; 2ECU A; 3BA3 A; 3VY5 A; 2ECR A; 3A20 A; 3A6Q A; 3RH7 A; 3H96 A; 3ZOH A; 1JNW A; 3U5W A; 1G77 A; 1YLN A; 5JAB A; 2OU5 A; 3ZOD A; 4ZKY A; 4HMT A; 2PTF A; 3GAS A; 1W9A A; 5CHO A; 3B5M A; 3TGV A; 1Y30 A; 3AMF A; 3DB0 A; 2IML A; 2HQ7 A; 4F07 A; 2IAB A; 1I0R A; 2R6V A; 5CHE C; 1G79 A; 1W3O A; 4L82 A; 1XXO A; 4YWN A; 4HMV A; 3ZOC A; 3KYF A; 1USC A; 3R5W A; 2HHZ A; 4HMU A; 3E4V A; 1TY9 A; 4N7R C; 3KYG A; 2GJG A; 3BNK A; 2AQ6 A; 1EJE A; 1W3R A; 3K87 A; 3VYA A; 1XHN A; 2HQ9 A; 2D37 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
