3R5PA

Structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
113
structure length
113
Chain Sequence
GTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (40-43)TIV1 (101-104)S1 (47-52)S3 (72-76)TI2 (53-56)EMPTYTI3 (54-57)S2 (59-69)TII'1 (69-72)S5 (105-113)AH1 (88-94)TVIII1 (82-85)S4 (97-102)Updating...
connected with : NaN
publication title Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.
pubmed doi rcsb
molecule keywords Deazaflavin-dependent nitroreductase
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
total genus 25
structure length 113
sequence length 113
ec nomenclature ec 1.-.-.-:
pdb deposition date 2011-03-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3r5pA00
1W9AA 2RDEA 3EC6A 3R5YA 1RZ0A 3A6RA 4HX6A 2HTDA 4XJ2A 1W3QA 2HQ9A 4ZKYA 3VY5A 4L82A 3NFWA 3BPKA 3HY8A 4Z85A 1FLMA 3DNHA 2I51A 3HMZA 3AWHA 3U0IA 3A20A 3DB0A 3VY2A 2NR4A 3DMBA 4Y9IA 2FG9A 4HMWA 4R82A 3U5WA 4XHYA 2D38A 3R5WA 1Y30A 1DNLA 3VYAA 3SWJA 3TGVA 2ED4A 4YBNA 2ASFA 1WGBA 2ECUA 2IMLA 3BA3A 2D5MA 3ZOGA 3U34A 3KYFA 3KYGA 2R6VA 1AXJA 3ZOHA 3AMFA 3K88A 1NRGA 1TY9A 4HMVA 1G77A 2HHZA 1CI0A 2X1KA 2IG6A 1USCA 3H96A 3FKHA 1WLKA 1XHNA 1T9MA 2Q9KA 1I0SA 2OL5A 4HMTA 3IN6A 3PFTA 1YOAA 2R0XA 2PTFA 2X1JA 1YLNA 3F7EA 2HTIA 5CHOA 3K86A 3CP3A 2ECRA 1RFEA 1VL7A 1W3OA 4IRAA 1WV4A 2VPAA 3ZOCA 1USFA 2AQ6A 3RH7A 3FGEA 1EJEA 5BNCA 5JABA 3A6QA 3R5PA 1G79A 4HMSA 4N7RC 3K87A 1G78A 2HQ7A 2FURA 3ZOEA 4F07A 1W3RA 4QVBA 2A2JA 2D36A 2IABA 3R5ZA 4HMXA 5CHEC 2QCKA 1W3PA 2OU5A 2GJGA 3B5MA 3U35A 2QEAA 5ESCA 1RZ1A 1G76A 2E83A 2RE7A 3BNKA 1WLIA 1XXOA 3E4VA 4HMUA 3ZOFA 3R5LA 4YWNA 3R5RA 2ARZA 1I0RA 3ZODA 2D37A 1JNWA 2FHQA 3GASA 2I02A 3CB0A
chains in the Genus database with same CATH superfamily
1W9AA 2RDEA 3EC6A 3R5YA 1RZ0A 3A6RA 4HX6A 2HTDA 4XJ2A 1W3QA 4W64A 2HQ9A 4ZKYA 3VY5A 4L82A 3NFWA 3BPKA 3HY8A 4Z85A 1FLMA 3DNHA 2I51A 3HMZA 3AWHA 3U0IA 3A20A 3DB0A 4HKHA 3VY2A 2NR4A 3DMBA 4Y9IA 2FG9A 4HMWA 4R82A 4UHVA 3U5WA 4XHYA 2D38A 3R5WA 1Y30A 1DNLA 3VYAA 3SWJA 3TGVA 2ED4A 4YBNA 2ASFA 1WGBA 2ECUA 2IMLA 3BA3A 4MTKA 2D5MA 3ZOGA 3U34A 3KYFA 3KYGA 2R6VA 1AXJA 3ZOHA 3AMFA 3K88A 2GUJA 1NRGA 1TY9A 4HMVA 1G77A 2HHZA 1CI0A 2X1KA 2IG6A 1USCA 3H96A 3FKHA 1WLKA 1XHNA 1T9MA 2Q9KA 1I0SA 2OL5A 4HMTA 2P5ZX 3HE1A 3IN6A 3PFTA 1YOAA 2R0XA 2PTFA 2X1JA 1YLNA 3F7EA 2L1TA 3V4HA 2HTIA 5CHOA 3K86A 3CP3A 2ECRA 1RFEA 1VL7A 1W3OA 4IRAA 1WV4A 2VPAA 3ZOCA 1USFA 2AQ6A 3RH7A 3FGEA 1EJEA 5BNCA 5JABA 3EAAA 3A6QA 3R5PA 1G79A 4HMSA 4N7RC 3K87A 1G78A 2HQ7A 2FURA 3ZOEA 4F07A 1W3RA 4TV4A 4QVBA 2A2JA 2D36A 2IABA 3R5ZA 4HMXA 5CHEC 2QCKA 1W3PA 2OU5A 2GJGA 3B5MA 3U35A 2QEAA 5ESCA 1RZ1A 1G76A 2E83A 2RE7A 3BNKA 1WLIA 1XXOA 1Y12A 3E4VA 4HMUA 3ZOFA 3R5LA 4YWNA 3R5RA 2ARZA 1I0RA 2K4QA 3ZODA 2D37A 1JNWA 2FHQA 3GASA 2I02A 3CB0A
chains in the Genus database with same CATH topology
1W9AA 2RDEA 3EC6A 3R5YA 1RZ0A 3A6RA 4HX6A 2HTDA 4XJ2A 1W3QA 2HQ9A 4ZKYA 3VY5A 4L82A 3NFWA 3BPKA 3HY8A 4Z85A 1FLMA 3DNHA 2I51A 3HMZA 3AWHA 3U0IA 3A20A 3DB0A 3VY2A 2NR4A 3DMBA 4Y9IA 2FG9A 4HMWA 4R82A 3U5WA 4XHYA 2D38A 3R5WA 1Y30A 1DNLA 3VYAA 3SWJA 3TGVA 2ED4A 4YBNA 2ASFA 1WGBA 2ECUA 2IMLA 3BA3A 2D5MA 3ZOGA 3U34A 3KYFA 3KYGA 2R6VA 1AXJA 3ZOHA 3AMFA 3K88A 1NRGA 1TY9A 4HMVA 1G77A 2HHZA 1CI0A 2X1KA 2IG6A 1USCA 3H96A 3FKHA 1WLKA 1XHNA 1T9MA 2Q9KA 1I0SA 2OL5A 4HMTA 3IN6A 3PFTA 1YOAA 2R0XA 2PTFA 2X1JA 1YLNA 3F7EA 2HTIA 5CHOA 3K86A 3CP3A 2ECRA 1RFEA 1VL7A 1W3OA 4IRAA 1WV4A 2VPAA 3ZOCA 1USFA 2AQ6A 3RH7A 3FGEA 1EJEA 5BNCA 5JABA 3A6QA 3R5PA 1G79A 4HMSA 4N7RC 3K87A 1G78A 2HQ7A 2FURA 3ZOEA 4F07A 1W3RA 4QVBA 2A2JA 2D36A 2IABA 3R5ZA 4HMXA 5CHEC 2QCKA 1W3PA 2OU5A 2GJGA 3B5MA 3U35A 2QEAA 5ESCA 1RZ1A 1G76A 2E83A 2RE7A 3BNKA 1WLIA 1XXOA 3E4VA 4HMUA 3ZOFA 3R5LA 4YWNA 3R5RA 2ARZA 1I0RA 3ZODA 2D37A 1JNWA 2FHQA 3GASA 2I02A 3CB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W9A A;  2RDE A;  3EC6 A;  3R5Y A;  1RZ0 A;  3A6R A;  4HX6 A;  2HTD A;  4XJ2 A;  1W3Q A;  2HQ9 A;  4ZKY A;  3VY5 A;  4L82 A;  3NFW A;  3BPK A;  3HY8 A;  4Z85 A;  1FLM A;  3DNH A;  2I51 A;  3HMZ A;  3AWH A;  3U0I A;  3A20 A;  3DB0 A;  3VY2 A;  2NR4 A;  3DMB A;  4Y9I A;  2FG9 A;  4HMW A;  4R82 A;  3U5W A;  4XHY A;  2D38 A;  3R5W A;  1Y30 A;  1DNL A;  3VYA A;  3SWJ A;  3TGV A;  2ED4 A;  4YBN A;  2ASF A;  1WGB A;  2ECU A;  2IML A;  3BA3 A;  2D5M A;  3ZOG A;  3U34 A;  3KYF A;  3KYG A;  2R6V A;  1AXJ A;  3ZOH A;  3AMF A;  3K88 A;  1NRG A;  1TY9 A;  4HMV A;  1G77 A;  2HHZ A;  1CI0 A;  2X1K A;  2IG6 A;  1USC A;  3H96 A;  3FKH A;  1WLK A;  1XHN A;  1T9M A;  2Q9K A;  1I0S A;  2OL5 A;  4HMT A;  3IN6 A;  3PFT A;  1YOA A;  2R0X A;  2PTF A;  2X1J A;  1YLN A;  3F7E A;  2HTI A;  5CHO A;  3K86 A;  3CP3 A;  2ECR A;  1RFE A;  1VL7 A;  1W3O A;  4IRA A;  1WV4 A;  2VPA A;  3ZOC A;  1USF A;  2AQ6 A;  3RH7 A;  3FGE A;  1EJE A;  5BNC A;  5JAB A;  3A6Q A;  3R5P A;  1G79 A;  4HMS A;  4N7R C;  3K87 A;  1G78 A;  2HQ7 A;  2FUR A;  3ZOE A;  4F07 A;  1W3R A;  4QVB A;  2A2J A;  2D36 A;  2IAB A;  3R5Z A;  4HMX A;  5CHE C;  2QCK A;  1W3P A;  2OU5 A;  2GJG A;  3B5M A;  3U35 A;  2QEA A;  5ESC A;  1RZ1 A;  1G76 A;  2E83 A;  2RE7 A;  3BNK A;  1WLI A;  1XXO A;  3E4V A;  4HMU A;  3ZOF A;  3R5L A;  4YWN A;  3R5R A;  2ARZ A;  1I0R A;  3ZOD A;  2D37 A;  1JNW A;  2FHQ A;  3GAS A;  2I02 A;  3CB0 A; 
#chains in the Genus database with same CATH topology
 1W9A A;  2RDE A;  3EC6 A;  3R5Y A;  1RZ0 A;  3A6R A;  4HX6 A;  2HTD A;  4XJ2 A;  1W3Q A;  4W64 A;  2HQ9 A;  4ZKY A;  3VY5 A;  4L82 A;  3NFW A;  3BPK A;  3HY8 A;  4Z85 A;  1FLM A;  3DNH A;  2I51 A;  3HMZ A;  3AWH A;  3U0I A;  3A20 A;  3DB0 A;  4HKH A;  3VY2 A;  2NR4 A;  3DMB A;  4Y9I A;  2FG9 A;  4HMW A;  4R82 A;  4UHV A;  3U5W A;  4XHY A;  2D38 A;  3R5W A;  1Y30 A;  1DNL A;  3VYA A;  3SWJ A;  3TGV A;  2ED4 A;  4YBN A;  2ASF A;  1WGB A;  2ECU A;  2IML A;  3BA3 A;  4MTK A;  2D5M A;  3ZOG A;  3U34 A;  3KYF A;  3KYG A;  2R6V A;  1AXJ A;  3ZOH A;  3AMF A;  3K88 A;  2GUJ A;  1NRG A;  1TY9 A;  4HMV A;  1G77 A;  2HHZ A;  1CI0 A;  2X1K A;  2IG6 A;  1USC A;  3H96 A;  3FKH A;  1WLK A;  1XHN A;  1T9M A;  2Q9K A;  1I0S A;  2OL5 A;  4HMT A;  2P5Z X;  3HE1 A;  3IN6 A;  3PFT A;  1YOA A;  2R0X A;  2PTF A;  2X1J A;  1YLN A;  3F7E A;  2L1T A;  3V4H A;  2HTI A;  5CHO A;  3K86 A;  3CP3 A;  2ECR A;  1RFE A;  1VL7 A;  1W3O A;  4IRA A;  1WV4 A;  2VPA A;  3ZOC A;  1USF A;  2AQ6 A;  3RH7 A;  3FGE A;  1EJE A;  5BNC A;  5JAB A;  3EAA A;  3A6Q A;  3R5P A;  1G79 A;  4HMS A;  4N7R C;  3K87 A;  1G78 A;  2HQ7 A;  2FUR A;  3ZOE A;  4F07 A;  1W3R A;  4TV4 A;  4QVB A;  2A2J A;  2D36 A;  2IAB A;  3R5Z A;  4HMX A;  5CHE C;  2QCK A;  1W3P A;  2OU5 A;  2GJG A;  3B5M A;  3U35 A;  2QEA A;  5ESC A;  1RZ1 A;  1G76 A;  2E83 A;  2RE7 A;  3BNK A;  1WLI A;  1XXO A;  1Y12 A;  3E4V A;  4HMU A;  3ZOF A;  3R5L A;  4YWN A;  3R5R A;  2ARZ A;  1I0R A;  2K4Q A;  3ZOD A;  2D37 A;  1JNW A;  2FHQ A;  3GAS A;  2I02 A;  3CB0 A; 
#chains in the Genus database with same CATH homology
 1W9A A;  2RDE A;  3EC6 A;  3R5Y A;  1RZ0 A;  3A6R A;  4HX6 A;  2HTD A;  4XJ2 A;  1W3Q A;  2HQ9 A;  4ZKY A;  3VY5 A;  4L82 A;  3NFW A;  3BPK A;  3HY8 A;  4Z85 A;  1FLM A;  3DNH A;  2I51 A;  3HMZ A;  3AWH A;  3U0I A;  3A20 A;  3DB0 A;  3VY2 A;  2NR4 A;  3DMB A;  4Y9I A;  2FG9 A;  4HMW A;  4R82 A;  3U5W A;  4XHY A;  2D38 A;  3R5W A;  1Y30 A;  1DNL A;  3VYA A;  3SWJ A;  3TGV A;  2ED4 A;  4YBN A;  2ASF A;  1WGB A;  2ECU A;  2IML A;  3BA3 A;  2D5M A;  3ZOG A;  3U34 A;  3KYF A;  3KYG A;  2R6V A;  1AXJ A;  3ZOH A;  3AMF A;  3K88 A;  1NRG A;  1TY9 A;  4HMV A;  1G77 A;  2HHZ A;  1CI0 A;  2X1K A;  2IG6 A;  1USC A;  3H96 A;  3FKH A;  1WLK A;  1XHN A;  1T9M A;  2Q9K A;  1I0S A;  2OL5 A;  4HMT A;  3IN6 A;  3PFT A;  1YOA A;  2R0X A;  2PTF A;  2X1J A;  1YLN A;  3F7E A;  2HTI A;  5CHO A;  3K86 A;  3CP3 A;  2ECR A;  1RFE A;  1VL7 A;  1W3O A;  4IRA A;  1WV4 A;  2VPA A;  3ZOC A;  1USF A;  2AQ6 A;  3RH7 A;  3FGE A;  1EJE A;  5BNC A;  5JAB A;  3A6Q A;  3R5P A;  1G79 A;  4HMS A;  4N7R C;  3K87 A;  1G78 A;  2HQ7 A;  2FUR A;  3ZOE A;  4F07 A;  1W3R A;  4QVB A;  2A2J A;  2D36 A;  2IAB A;  3R5Z A;  4HMX A;  5CHE C;  2QCK A;  1W3P A;  2OU5 A;  2GJG A;  3B5M A;  3U35 A;  2QEA A;  5ESC A;  1RZ1 A;  1G76 A;  2E83 A;  2RE7 A;  3BNK A;  1WLI A;  1XXO A;  3E4V A;  4HMU A;  3ZOF A;  3R5L A;  4YWN A;  3R5R A;  2ARZ A;  1I0R A;  3ZOD A;  2D37 A;  1JNW A;  2FHQ A;  3GAS A;  2I02 A;  3CB0 A; 
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