3R5P | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	113
structure length	113
Chain Sequence	GTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. pubmed doi rcsb
molecule keywords	Deazaflavin-dependent nitroreductase
molecule tags	Oxidoreductase
source organism	Mycobacterium tuberculosis
total genus	25
structure length	113
sequence length	113
ec nomenclature	ec 1.-.-.-:
pdb deposition date	2011-03-19

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	3r5pA00

4L82A 3E4VA 1W9AA 4QVBA 2RDEA 1G78A 1CI0A 1RZ0A 3U34A 3K88A 1G77A 3A20A 3A6QA 1XHNA 1I0SA 3BPKA 2ED4A 1WV4A 3K87A 3R5LA 3HMZA 4HX6A 2A2JA 2ECUA 4XHYA 1WLKA 3BA3A 3CB0A 3R5WA 1JNWA 4XJ2A 4HMUA 3ZOEA 2VPAA 2FHQA 1EJEA 1YLNA 2HTIA 3KYFA 3SWJA 1NRGA 1W3QA 3AMFA 2PTFA 1TY9A 3KYGA 1RZ1A 4IRAA 3ZOHA 1W3PA 5JABA 3VY2A 2X1JA 3DNHA 3AWHA 2R6VA 1RFEA 3H96A 2FG9A 1G76A 2FURA 1I0RA 5CHOA 3EC6A 2HQ9A 3CP3A 4HMWA 2OL5A 2GJGA 2E83A 3K86A 1FLMA 3PFTA 3VYAA 2ASFA 2D37A 1USFA 3RH7A 3IN6A 3BNKA 4ZKYA 1DNLA 2OU5A 1G79A 2ARZA 3R5ZA 2RE7A 3GASA 1VL7A 1WLIA 3R5YA 4HMSA 2Q9KA 3DB0A 2ECRA 3U35A 1T9MA 2QEAA 5BNCA 5CHEC 1AXJA 1XXOA 2AQ6A 4F07A 3TGVA 2I02A 3R5PA 2D36A 4HMXA 3U5WA 5ESCA 1USCA 3A6RA 3NFWA 1YOAA 4R82A 4Y9IA 3ZOFA 3HY8A 3ZOCA 3DMBA 1WGBA 3ZOGA 1W3OA 2HQ7A 4N7RC 2QCKA 3FKHA 3B5MA 2NR4A 2HHZA 3F7EA 2I51A 3VY5A 3ZODA 1Y30A 2D5MA 2X1KA 1W3RA 4HMVA 2R0XA 2D38A 4YBNA 2IMLA 4Z85A 4YWNA 2IABA 4HMTA 2IG6A 3U0IA 3R5RA 2HTDA 3FGEA
chains in the Genus database with same CATH superfamily

4L82A 3E4VA 1W9AA 4QVBA 2RDEA 1G78A 1CI0A 1RZ0A 3U34A 3K88A 1G77A 3A20A 3A6QA 1XHNA 1I0SA 3BPKA 2ED4A 1WV4A 3K87A 3R5LA 3HMZA 4HX6A 2A2JA 2ECUA 4XHYA 1WLKA 3BA3A 3CB0A 3R5WA 1JNWA 4XJ2A 4HMUA 4HKHA 3ZOEA 2VPAA 2FHQA 1EJEA 1YLNA 2HTIA 3KYFA 3V4HA 3SWJA 1NRGA 1W3QA 3AMFA 2PTFA 1TY9A 3KYGA 1RZ1A 2GUJA 4IRAA 3ZOHA 1Y12A 1W3PA 5JABA 3VY2A 2X1JA 3DNHA 3AWHA 2R6VA 1RFEA 4W64A 3H96A 2FG9A 1G76A 2FURA 4UHVA 1I0RA 5CHOA 3EC6A 2HQ9A 3CP3A 4HMWA 2OL5A 2GJGA 2E83A 3K86A 1FLMA 3PFTA 3VYAA 2ASFA 2D37A 1USFA 3RH7A 3IN6A 3BNKA 4ZKYA 1DNLA 2OU5A 1G79A 2ARZA 3R5ZA 2RE7A 3GASA 1VL7A 1WLIA 3R5YA 4HMSA 2Q9KA 3DB0A 2ECRA 3U35A 1T9MA 2QEAA 5BNCA 5CHEC 3HE1A 2L1TA 1AXJA 1XXOA 2AQ6A 4F07A 3TGVA 2K4QA 2I02A 3R5PA 2D36A 4HMXA 3U5WA 5ESCA 1USCA 3A6RA 3NFWA 2P5ZX 1YOAA 4R82A 4Y9IA 3EAAA 4TV4A 3HY8A 3ZOFA 3ZOCA 4MTKA 3DMBA 1WGBA 3ZOGA 1W3OA 2HQ7A 4N7RC 2QCKA 3FKHA 3B5MA 2NR4A 2HHZA 3F7EA 2I51A 3VY5A 3ZODA 1Y30A 2D5MA 2X1KA 1W3RA 4HMVA 2R0XA 2D38A 4YBNA 2IMLA 4Z85A 4YWNA 2IABA 4HMTA 2IG6A 3U0IA 3R5RA 2HTDA 3FGEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4L82 A;  3E4V A;  1W9A A;  4QVB A;  2RDE A;  1G78 A;  1CI0 A;  1RZ0 A;  3U34 A;  3K88 A;  1G77 A;  3A20 A;  3A6Q A;  1XHN A;  1I0S A;  3BPK A;  2ED4 A;  1WV4 A;  3K87 A;  3R5L A;  3HMZ A;  4HX6 A;  2A2J A;  2ECU A;  4XHY A;  1WLK A;  3BA3 A;  3CB0 A;  3R5W A;  1JNW A;  4XJ2 A;  4HMU A;  3ZOE A;  2VPA A;  2FHQ A;  1EJE A;  1YLN A;  2HTI A;  3KYF A;  3SWJ A;  1NRG A;  1W3Q A;  3AMF A;  2PTF A;  1TY9 A;  3KYG A;  1RZ1 A;  4IRA A;  3ZOH A;  1W3P A;  5JAB A;  3VY2 A;  2X1J A;  3DNH A;  3AWH A;  2R6V A;  1RFE A;  3H96 A;  2FG9 A;  1G76 A;  2FUR A;  1I0R A;  5CHO A;  3EC6 A;  2HQ9 A;  3CP3 A;  4HMW A;  2OL5 A;  2GJG A;  2E83 A;  3K86 A;  1FLM A;  3PFT A;  3VYA A;  2ASF A;  2D37 A;  1USF A;  3RH7 A;  3IN6 A;  3BNK A;  4ZKY A;  1DNL A;  2OU5 A;  1G79 A;  2ARZ A;  3R5Z A;  2RE7 A;  3GAS A;  1VL7 A;  1WLI A;  3R5Y A;  4HMS A;  2Q9K A;  3DB0 A;  2ECR A;  3U35 A;  1T9M A;  2QEA A;  5BNC A;  5CHE C;  1AXJ A;  1XXO A;  2AQ6 A;  4F07 A;  3TGV A;  2I02 A;  3R5P A;  2D36 A;  4HMX A;  3U5W A;  5ESC A;  1USC A;  3A6R A;  3NFW A;  1YOA A;  4R82 A;  4Y9I A;  3ZOF A;  3HY8 A;  3ZOC A;  3DMB A;  1WGB A;  3ZOG A;  1W3O A;  2HQ7 A;  4N7R C;  2QCK A;  3FKH A;  3B5M A;  2NR4 A;  2HHZ A;  3F7E A;  2I51 A;  3VY5 A;  3ZOD A;  1Y30 A;  2D5M A;  2X1K A;  1W3R A;  4HMV A;  2R0X A;  2D38 A;  4YBN A;  2IML A;  4Z85 A;  4YWN A;  2IAB A;  4HMT A;  2IG6 A;  3U0I A;  3R5R A;  2HTD A;  3FGE A; 
#chains in the Genus database with same CATH topology
 4L82 A;  3E4V A;  1W9A A;  4QVB A;  2RDE A;  1G78 A;  1CI0 A;  1RZ0 A;  3U34 A;  3K88 A;  1G77 A;  3A20 A;  3A6Q A;  1XHN A;  1I0S A;  3BPK A;  2ED4 A;  1WV4 A;  3K87 A;  3R5L A;  3HMZ A;  4HX6 A;  2A2J A;  2ECU A;  4XHY A;  1WLK A;  3BA3 A;  3CB0 A;  3R5W A;  1JNW A;  4XJ2 A;  4HMU A;  4HKH A;  3ZOE A;  2VPA A;  2FHQ A;  1EJE A;  1YLN A;  2HTI A;  3KYF A;  3V4H A;  3SWJ A;  1NRG A;  1W3Q A;  3AMF A;  2PTF A;  1TY9 A;  3KYG A;  1RZ1 A;  2GUJ A;  4IRA A;  3ZOH A;  1Y12 A;  1W3P A;  5JAB A;  3VY2 A;  2X1J A;  3DNH A;  3AWH A;  2R6V A;  1RFE A;  4W64 A;  3H96 A;  2FG9 A;  1G76 A;  2FUR A;  4UHV A;  1I0R A;  5CHO A;  3EC6 A;  2HQ9 A;  3CP3 A;  4HMW A;  2OL5 A;  2GJG A;  2E83 A;  3K86 A;  1FLM A;  3PFT A;  3VYA A;  2ASF A;  2D37 A;  1USF A;  3RH7 A;  3IN6 A;  3BNK A;  4ZKY A;  1DNL A;  2OU5 A;  1G79 A;  2ARZ A;  3R5Z A;  2RE7 A;  3GAS A;  1VL7 A;  1WLI A;  3R5Y A;  4HMS A;  2Q9K A;  3DB0 A;  2ECR A;  3U35 A;  1T9M A;  2QEA A;  5BNC A;  5CHE C;  3HE1 A;  2L1T A;  1AXJ A;  1XXO A;  2AQ6 A;  4F07 A;  3TGV A;  2K4Q A;  2I02 A;  3R5P A;  2D36 A;  4HMX A;  3U5W A;  5ESC A;  1USC A;  3A6R A;  3NFW A;  2P5Z X;  1YOA A;  4R82 A;  4Y9I A;  3EAA A;  4TV4 A;  3HY8 A;  3ZOF A;  3ZOC A;  4MTK A;  3DMB A;  1WGB A;  3ZOG A;  1W3O A;  2HQ7 A;  4N7R C;  2QCK A;  3FKH A;  3B5M A;  2NR4 A;  2HHZ A;  3F7E A;  2I51 A;  3VY5 A;  3ZOD A;  1Y30 A;  2D5M A;  2X1K A;  1W3R A;  4HMV A;  2R0X A;  2D38 A;  4YBN A;  2IML A;  4Z85 A;  4YWN A;  2IAB A;  4HMT A;  2IG6 A;  3U0I A;  3R5R A;  2HTD A;  3FGE A; 
#chains in the Genus database with same CATH homology
 4L82 A;  3E4V A;  1W9A A;  4QVB A;  2RDE A;  1G78 A;  1CI0 A;  1RZ0 A;  3U34 A;  3K88 A;  1G77 A;  3A20 A;  3A6Q A;  1XHN A;  1I0S A;  3BPK A;  2ED4 A;  1WV4 A;  3K87 A;  3R5L A;  3HMZ A;  4HX6 A;  2A2J A;  2ECU A;  4XHY A;  1WLK A;  3BA3 A;  3CB0 A;  3R5W A;  1JNW A;  4XJ2 A;  4HMU A;  3ZOE A;  2VPA A;  2FHQ A;  1EJE A;  1YLN A;  2HTI A;  3KYF A;  3SWJ A;  1NRG A;  1W3Q A;  3AMF A;  2PTF A;  1TY9 A;  3KYG A;  1RZ1 A;  4IRA A;  3ZOH A;  1W3P A;  5JAB A;  3VY2 A;  2X1J A;  3DNH A;  3AWH A;  2R6V A;  1RFE A;  3H96 A;  2FG9 A;  1G76 A;  2FUR A;  1I0R A;  5CHO A;  3EC6 A;  2HQ9 A;  3CP3 A;  4HMW A;  2OL5 A;  2GJG A;  2E83 A;  3K86 A;  1FLM A;  3PFT A;  3VYA A;  2ASF A;  2D37 A;  1USF A;  3RH7 A;  3IN6 A;  3BNK A;  4ZKY A;  1DNL A;  2OU5 A;  1G79 A;  2ARZ A;  3R5Z A;  2RE7 A;  3GAS A;  1VL7 A;  1WLI A;  3R5Y A;  4HMS A;  2Q9K A;  3DB0 A;  2ECR A;  3U35 A;  1T9M A;  2QEA A;  5BNC A;  5CHE C;  1AXJ A;  1XXO A;  2AQ6 A;  4F07 A;  3TGV A;  2I02 A;  3R5P A;  2D36 A;  4HMX A;  3U5W A;  5ESC A;  1USC A;  3A6R A;  3NFW A;  1YOA A;  4R82 A;  4Y9I A;  3ZOF A;  3HY8 A;  3ZOC A;  3DMB A;  1WGB A;  3ZOG A;  1W3O A;  2HQ7 A;  4N7R C;  2QCK A;  3FKH A;  3B5M A;  2NR4 A;  2HHZ A;  3F7E A;  2I51 A;  3VY5 A;  3ZOD A;  1Y30 A;  2D5M A;  2X1K A;  1W3R A;  4HMV A;  2R0X A;  2D38 A;  4YBN A;  2IML A;  4Z85 A;  4YWN A;  2IAB A;  4HMT A;  2IG6 A;  3U0I A;  3R5R A;  2HTD A;  3FGE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3R5PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN