3R5PA

Structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
113
structure length
113
Chain Sequence
GTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (40-43)TIV1 (101-104)S1 (47-52)S3 (72-76)TI2 (53-56)EMPTYTI3 (54-57)S2 (59-69)TII'1 (69-72)S5 (105-113)AH1 (88-94)TVIII1 (82-85)S4 (97-102)Updating...
connected with : NaN
publication title Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.
pubmed doi rcsb
molecule keywords Deazaflavin-dependent nitroreductase
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
total genus 25
structure length 113
sequence length 113
ec nomenclature ec 1.-.-.-:
pdb deposition date 2011-03-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3r5pA00
2FHQA 1WLIA 2R0XA 3VYAA 2HQ9A 2RE7A 3F7EA 3KYGA 2I02A 2RDEA 1TY9A 2ECUA 3A6QA 1G79A 3HY8A 3CP3A 3NFWA 3R5LA 3AMFA 4XJ2A 1W9AA 1I0SA 1W3PA 2D36A 2I51A 2X1JA 2Q9KA 2ECRA 3FGEA 3DMBA 3RH7A 2QEAA 4Z85A 1I0RA 2FURA 2IG6A 3R5WA 4Y9IA 5BNCA 3R5RA 3FKHA 3CB0A 3IN6A 1AXJA 5JABA 3GASA 2AQ6A 1W3RA 2HTIA 1EJEA 3BPKA 3ZOCA 1WV4A 3H96A 2R6VA 1YOAA 2OU5A 3K87A 3BA3A 3R5PA 1DNLA 1XXOA 3R5YA 1WGBA 4N7RC 2D5MA 1G76A 5CHOA 1WLKA 4QVBA 4HX6A 3DNHA 4HMTA 4R82A 1CI0A 3SWJA 4HMUA 1RZ1A 2HTDA 1G77A 2VPAA 3E4VA 3PFTA 2ARZA 3U34A 4HMWA 2HQ7A 3U0IA 1NRGA 3ZOGA 2PTFA 3ZODA 2D37A 3ZOHA 3VY5A 1W3OA 3BNKA 2X1KA 4IRAA 4YWNA 3A6RA 4F07A 3VY2A 3AWHA 4ZKYA 4HMXA 2A2JA 1RFEA 2E83A 1XHNA 3K88A 3A20A 2NR4A 3KYFA 3TGVA 1JNWA 1G78A 1W3QA 2IMLA 1VL7A 1Y30A 4L82A 3HMZA 2FG9A 4HMSA 1USFA 4YBNA 4XHYA 3K86A 2ED4A 3R5ZA 2D38A 3ZOFA 1FLMA 1T9MA 5ESCA 2ASFA 2IABA 3EC6A 3ZOEA 2QCKA 3U5WA 1YLNA 3U35A 2GJGA 3DB0A 1RZ0A 2HHZA 4HMVA 5CHEC 1USCA 3B5MA 2OL5A
chains in the Genus database with same CATH superfamily
2FHQA 1WLIA 2R0XA 3VYAA 2HQ9A 2RE7A 3F7EA 3KYGA 2I02A 2RDEA 1TY9A 2ECUA 3A6QA 1G79A 3HY8A 3CP3A 3NFWA 3R5LA 3AMFA 4XJ2A 1W9AA 1I0SA 1W3PA 2D36A 2I51A 3V4HA 2X1JA 2Q9KA 4TV4A 2ECRA 3FGEA 3DMBA 3RH7A 2QEAA 4Z85A 1I0RA 2FURA 2IG6A 3R5WA 4MTKA 4Y9IA 5BNCA 3R5RA 3FKHA 3CB0A 3IN6A 1AXJA 5JABA 3GASA 2AQ6A 1W3RA 2HTIA 2L1TA 1EJEA 3BPKA 3ZOCA 1WV4A 3H96A 2R6VA 1YOAA 2OU5A 4UHVA 3K87A 3BA3A 3R5PA 4W64A 1DNLA 1XXOA 3R5YA 1WGBA 4N7RC 2D5MA 1G76A 3HE1A 5CHOA 1WLKA 4HKHA 4QVBA 4HX6A 3DNHA 4HMTA 4R82A 1CI0A 3SWJA 4HMUA 1RZ1A 2HTDA 1G77A 2VPAA 3E4VA 3PFTA 2ARZA 3U34A 4HMWA 2HQ7A 3U0IA 1NRGA 3ZOGA 2PTFA 3ZODA 2D37A 3ZOHA 3VY5A 1W3OA 3BNKA 2X1KA 4IRAA 4YWNA 3A6RA 4F07A 3VY2A 1Y12A 3AWHA 4ZKYA 4HMXA 2A2JA 1RFEA 2E83A 1XHNA 3K88A 3A20A 2NR4A 3KYFA 3TGVA 1JNWA 1G78A 1W3QA 2IMLA 1VL7A 1Y30A 4L82A 3HMZA 2FG9A 4HMSA 1USFA 4YBNA 4XHYA 3K86A 2ED4A 3R5ZA 2D38A 3ZOFA 2GUJA 1FLMA 1T9MA 5ESCA 2ASFA 2IABA 2P5ZX 3EC6A 3ZOEA 2QCKA 3U5WA 1YLNA 3U35A 2GJGA 3DB0A 2K4QA 1RZ0A 2HHZA 4HMVA 3EAAA 5CHEC 1USCA 3B5MA 2OL5A
chains in the Genus database with same CATH topology
2FHQA 1WLIA 2R0XA 3VYAA 2HQ9A 2RE7A 3F7EA 3KYGA 2I02A 2RDEA 1TY9A 2ECUA 3A6QA 1G79A 3HY8A 3CP3A 3NFWA 3R5LA 3AMFA 4XJ2A 1W9AA 1I0SA 1W3PA 2D36A 2I51A 2X1JA 2Q9KA 2ECRA 3FGEA 3DMBA 3RH7A 2QEAA 4Z85A 1I0RA 2FURA 2IG6A 3R5WA 4Y9IA 5BNCA 3R5RA 3FKHA 3CB0A 3IN6A 1AXJA 5JABA 3GASA 2AQ6A 1W3RA 2HTIA 1EJEA 3BPKA 3ZOCA 1WV4A 3H96A 2R6VA 1YOAA 2OU5A 3K87A 3BA3A 3R5PA 1DNLA 1XXOA 3R5YA 1WGBA 4N7RC 2D5MA 1G76A 5CHOA 1WLKA 4QVBA 4HX6A 3DNHA 4HMTA 4R82A 1CI0A 3SWJA 4HMUA 1RZ1A 2HTDA 1G77A 2VPAA 3E4VA 3PFTA 2ARZA 3U34A 4HMWA 2HQ7A 3U0IA 1NRGA 3ZOGA 2PTFA 3ZODA 2D37A 3ZOHA 3VY5A 1W3OA 3BNKA 2X1KA 4IRAA 4YWNA 3A6RA 4F07A 3VY2A 3AWHA 4ZKYA 4HMXA 2A2JA 1RFEA 2E83A 1XHNA 3K88A 3A20A 2NR4A 3KYFA 3TGVA 1JNWA 1G78A 1W3QA 2IMLA 1VL7A 1Y30A 4L82A 3HMZA 2FG9A 4HMSA 1USFA 4YBNA 4XHYA 3K86A 2ED4A 3R5ZA 2D38A 3ZOFA 1FLMA 1T9MA 5ESCA 2ASFA 2IABA 3EC6A 3ZOEA 2QCKA 3U5WA 1YLNA 3U35A 2GJGA 3DB0A 1RZ0A 2HHZA 4HMVA 5CHEC 1USCA 3B5MA 2OL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FHQ A;  1WLI A;  2R0X A;  3VYA A;  2HQ9 A;  2RE7 A;  3F7E A;  3KYG A;  2I02 A;  2RDE A;  1TY9 A;  2ECU A;  3A6Q A;  1G79 A;  3HY8 A;  3CP3 A;  3NFW A;  3R5L A;  3AMF A;  4XJ2 A;  1W9A A;  1I0S A;  1W3P A;  2D36 A;  2I51 A;  2X1J A;  2Q9K A;  2ECR A;  3FGE A;  3DMB A;  3RH7 A;  2QEA A;  4Z85 A;  1I0R A;  2FUR A;  2IG6 A;  3R5W A;  4Y9I A;  5BNC A;  3R5R A;  3FKH A;  3CB0 A;  3IN6 A;  1AXJ A;  5JAB A;  3GAS A;  2AQ6 A;  1W3R A;  2HTI A;  1EJE A;  3BPK A;  3ZOC A;  1WV4 A;  3H96 A;  2R6V A;  1YOA A;  2OU5 A;  3K87 A;  3BA3 A;  3R5P A;  1DNL A;  1XXO A;  3R5Y A;  1WGB A;  4N7R C;  2D5M A;  1G76 A;  5CHO A;  1WLK A;  4QVB A;  4HX6 A;  3DNH A;  4HMT A;  4R82 A;  1CI0 A;  3SWJ A;  4HMU A;  1RZ1 A;  2HTD A;  1G77 A;  2VPA A;  3E4V A;  3PFT A;  2ARZ A;  3U34 A;  4HMW A;  2HQ7 A;  3U0I A;  1NRG A;  3ZOG A;  2PTF A;  3ZOD A;  2D37 A;  3ZOH A;  3VY5 A;  1W3O A;  3BNK A;  2X1K A;  4IRA A;  4YWN A;  3A6R A;  4F07 A;  3VY2 A;  3AWH A;  4ZKY A;  4HMX A;  2A2J A;  1RFE A;  2E83 A;  1XHN A;  3K88 A;  3A20 A;  2NR4 A;  3KYF A;  3TGV A;  1JNW A;  1G78 A;  1W3Q A;  2IML A;  1VL7 A;  1Y30 A;  4L82 A;  3HMZ A;  2FG9 A;  4HMS A;  1USF A;  4YBN A;  4XHY A;  3K86 A;  2ED4 A;  3R5Z A;  2D38 A;  3ZOF A;  1FLM A;  1T9M A;  5ESC A;  2ASF A;  2IAB A;  3EC6 A;  3ZOE A;  2QCK A;  3U5W A;  1YLN A;  3U35 A;  2GJG A;  3DB0 A;  1RZ0 A;  2HHZ A;  4HMV A;  5CHE C;  1USC A;  3B5M A;  2OL5 A; 
#chains in the Genus database with same CATH topology
 2FHQ A;  1WLI A;  2R0X A;  3VYA A;  2HQ9 A;  2RE7 A;  3F7E A;  3KYG A;  2I02 A;  2RDE A;  1TY9 A;  2ECU A;  3A6Q A;  1G79 A;  3HY8 A;  3CP3 A;  3NFW A;  3R5L A;  3AMF A;  4XJ2 A;  1W9A A;  1I0S A;  1W3P A;  2D36 A;  2I51 A;  3V4H A;  2X1J A;  2Q9K A;  4TV4 A;  2ECR A;  3FGE A;  3DMB A;  3RH7 A;  2QEA A;  4Z85 A;  1I0R A;  2FUR A;  2IG6 A;  3R5W A;  4MTK A;  4Y9I A;  5BNC A;  3R5R A;  3FKH A;  3CB0 A;  3IN6 A;  1AXJ A;  5JAB A;  3GAS A;  2AQ6 A;  1W3R A;  2HTI A;  2L1T A;  1EJE A;  3BPK A;  3ZOC A;  1WV4 A;  3H96 A;  2R6V A;  1YOA A;  2OU5 A;  4UHV A;  3K87 A;  3BA3 A;  3R5P A;  4W64 A;  1DNL A;  1XXO A;  3R5Y A;  1WGB A;  4N7R C;  2D5M A;  1G76 A;  3HE1 A;  5CHO A;  1WLK A;  4HKH A;  4QVB A;  4HX6 A;  3DNH A;  4HMT A;  4R82 A;  1CI0 A;  3SWJ A;  4HMU A;  1RZ1 A;  2HTD A;  1G77 A;  2VPA A;  3E4V A;  3PFT A;  2ARZ A;  3U34 A;  4HMW A;  2HQ7 A;  3U0I A;  1NRG A;  3ZOG A;  2PTF A;  3ZOD A;  2D37 A;  3ZOH A;  3VY5 A;  1W3O A;  3BNK A;  2X1K A;  4IRA A;  4YWN A;  3A6R A;  4F07 A;  3VY2 A;  1Y12 A;  3AWH A;  4ZKY A;  4HMX A;  2A2J A;  1RFE A;  2E83 A;  1XHN A;  3K88 A;  3A20 A;  2NR4 A;  3KYF A;  3TGV A;  1JNW A;  1G78 A;  1W3Q A;  2IML A;  1VL7 A;  1Y30 A;  4L82 A;  3HMZ A;  2FG9 A;  4HMS A;  1USF A;  4YBN A;  4XHY A;  3K86 A;  2ED4 A;  3R5Z A;  2D38 A;  3ZOF A;  2GUJ A;  1FLM A;  1T9M A;  5ESC A;  2ASF A;  2IAB A;  2P5Z X;  3EC6 A;  3ZOE A;  2QCK A;  3U5W A;  1YLN A;  3U35 A;  2GJG A;  3DB0 A;  2K4Q A;  1RZ0 A;  2HHZ A;  4HMV A;  3EAA A;  5CHE C;  1USC A;  3B5M A;  2OL5 A; 
#chains in the Genus database with same CATH homology
 2FHQ A;  1WLI A;  2R0X A;  3VYA A;  2HQ9 A;  2RE7 A;  3F7E A;  3KYG A;  2I02 A;  2RDE A;  1TY9 A;  2ECU A;  3A6Q A;  1G79 A;  3HY8 A;  3CP3 A;  3NFW A;  3R5L A;  3AMF A;  4XJ2 A;  1W9A A;  1I0S A;  1W3P A;  2D36 A;  2I51 A;  2X1J A;  2Q9K A;  2ECR A;  3FGE A;  3DMB A;  3RH7 A;  2QEA A;  4Z85 A;  1I0R A;  2FUR A;  2IG6 A;  3R5W A;  4Y9I A;  5BNC A;  3R5R A;  3FKH A;  3CB0 A;  3IN6 A;  1AXJ A;  5JAB A;  3GAS A;  2AQ6 A;  1W3R A;  2HTI A;  1EJE A;  3BPK A;  3ZOC A;  1WV4 A;  3H96 A;  2R6V A;  1YOA A;  2OU5 A;  3K87 A;  3BA3 A;  3R5P A;  1DNL A;  1XXO A;  3R5Y A;  1WGB A;  4N7R C;  2D5M A;  1G76 A;  5CHO A;  1WLK A;  4QVB A;  4HX6 A;  3DNH A;  4HMT A;  4R82 A;  1CI0 A;  3SWJ A;  4HMU A;  1RZ1 A;  2HTD A;  1G77 A;  2VPA A;  3E4V A;  3PFT A;  2ARZ A;  3U34 A;  4HMW A;  2HQ7 A;  3U0I A;  1NRG A;  3ZOG A;  2PTF A;  3ZOD A;  2D37 A;  3ZOH A;  3VY5 A;  1W3O A;  3BNK A;  2X1K A;  4IRA A;  4YWN A;  3A6R A;  4F07 A;  3VY2 A;  3AWH A;  4ZKY A;  4HMX A;  2A2J A;  1RFE A;  2E83 A;  1XHN A;  3K88 A;  3A20 A;  2NR4 A;  3KYF A;  3TGV A;  1JNW A;  1G78 A;  1W3Q A;  2IML A;  1VL7 A;  1Y30 A;  4L82 A;  3HMZ A;  2FG9 A;  4HMS A;  1USF A;  4YBN A;  4XHY A;  3K86 A;  2ED4 A;  3R5Z A;  2D38 A;  3ZOF A;  1FLM A;  1T9M A;  5ESC A;  2ASF A;  2IAB A;  3EC6 A;  3ZOE A;  2QCK A;  3U5W A;  1YLN A;  3U35 A;  2GJG A;  3DB0 A;  1RZ0 A;  2HHZ A;  4HMV A;  5CHE C;  1USC A;  3B5M A;  2OL5 A; 
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