3R5PA

Structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
113
structure length
113
Chain Sequence
GTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (40-43)TIV1 (101-104)S1 (47-52)S3 (72-76)TI2 (53-56)EMPTYTI3 (54-57)S2 (59-69)TII'1 (69-72)S5 (105-113)AH1 (88-94)TVIII1 (82-85)S4 (97-102)Updating...
connected with : NaN
publication title Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.
pubmed doi rcsb
molecule keywords Deazaflavin-dependent nitroreductase
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
total genus 25
structure length 113
sequence length 113
ec nomenclature ec 1.-.-.-:
pdb deposition date 2011-03-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3r5pA00
3F7EA 3GASA 3ZOEA 4HX6A 5BNCA 2R0XA 1NRGA 1W9AA 5CHOA 2GJGA 3KYFA 3R5WA 2OU5A 2D36A 3B5MA 1XHNA 1WV4A 3ZOHA 1G77A 4HMTA 1XXOA 3R5RA 1G76A 3EC6A 1USCA 4Z85A 1G78A 2HTIA 4L82A 3U0IA 2QCKA 3DMBA 2AQ6A 1Y30A 2HHZA 1VL7A 2IG6A 3CB0A 3HY8A 3FKHA 3IN6A 2I51A 1G79A 1FLMA 3A20A 4XJ2A 2X1JA 3DNHA 2D37A 3R5YA 3DB0A 1W3PA 4HMVA 1YLNA 4F07A 3VY5A 2QEAA 1W3RA 2IABA 2E83A 4HMUA 3H96A 3R5LA 1WGBA 2HTDA 1EJEA 3PFTA 3K86A 3CP3A 3E4VA 2I02A 1WLKA 3VY2A 2IMLA 2A2JA 1T9MA 1WLIA 1USFA 4YWNA 1DNLA 1CI0A 2D38A 2R6VA 3U34A 3U35A 4HMSA 4YBNA 4HMWA 4QVBA 3A6QA 3ZODA 3TGVA 3BNKA 3NFWA 2RE7A 3VYAA 5ESCA 3AWHA 1I0RA 2ASFA 4R82A 2ARZA 2RDEA 1RFEA 2ECUA 1AXJA 3ZOFA 3A6RA 4HMXA 3HMZA 1RZ0A 2FG9A 3U5WA 2HQ7A 5CHEC 1RZ1A 2FHQA 1JNWA 1I0SA 1W3OA 1YOAA 2Q9KA 3ZOGA 2ECRA 4IRAA 2X1KA 3K88A 4XHYA 3R5PA 2D5MA 3ZOCA 4Y9IA 2HQ9A 4N7RC 1W3QA 2NR4A 3RH7A 2PTFA 3AMFA 2ED4A 3FGEA 3R5ZA 3SWJA 3BPKA 5JABA 3BA3A 3KYGA 2VPAA 3K87A 4ZKYA 2OL5A 1TY9A 2FURA
chains in the Genus database with same CATH superfamily
3F7EA 3GASA 3ZOEA 4HX6A 5BNCA 2R0XA 4TV4A 1NRGA 1W9AA 5CHOA 2GJGA 3HE1A 3KYFA 3R5WA 2OU5A 2D36A 3B5MA 1XHNA 1WV4A 3ZOHA 1G77A 4HMTA 1XXOA 3R5RA 1G76A 3EC6A 1USCA 4Z85A 1G78A 2HTIA 4L82A 3U0IA 2QCKA 3DMBA 2P5ZX 2AQ6A 1Y30A 2HHZA 1VL7A 2IG6A 3CB0A 3HY8A 3FKHA 3IN6A 2I51A 1G79A 1FLMA 3A20A 4XJ2A 2L1TA 2X1JA 3DNHA 2D37A 3R5YA 3DB0A 1W3PA 2GUJA 4HMVA 1YLNA 4HKHA 4F07A 3VY5A 2QEAA 1W3RA 2IABA 2E83A 4HMUA 3EAAA 4MTKA 3H96A 3R5LA 1WGBA 2HTDA 1EJEA 3PFTA 3K86A 3CP3A 3E4VA 2I02A 1WLKA 3VY2A 2IMLA 2A2JA 1T9MA 1WLIA 1USFA 4YWNA 1DNLA 1CI0A 3V4HA 2D38A 2R6VA 3U34A 3U35A 4HMSA 4YBNA 4HMWA 4QVBA 3A6QA 3ZODA 3TGVA 3BNKA 3NFWA 2RE7A 3VYAA 5ESCA 3AWHA 1I0RA 2ASFA 4R82A 2ARZA 2RDEA 1RFEA 2ECUA 1AXJA 3ZOFA 3A6RA 4HMXA 3HMZA 1RZ0A 2FG9A 3U5WA 2HQ7A 5CHEC 1RZ1A 2FHQA 4UHVA 1JNWA 1I0SA 1W3OA 1YOAA 4W64A 2Q9KA 3ZOGA 2ECRA 4IRAA 2X1KA 3K88A 4XHYA 3R5PA 2D5MA 3ZOCA 4Y9IA 2HQ9A 4N7RC 1W3QA 2NR4A 3RH7A 2PTFA 3AMFA 2ED4A 3FGEA 3R5ZA 3SWJA 3BPKA 2K4QA 5JABA 3BA3A 3KYGA 2VPAA 1Y12A 3K87A 4ZKYA 2OL5A 1TY9A 2FURA
chains in the Genus database with same CATH topology
3F7EA 3GASA 3ZOEA 4HX6A 5BNCA 2R0XA 1NRGA 1W9AA 5CHOA 2GJGA 3KYFA 3R5WA 2OU5A 2D36A 3B5MA 1XHNA 1WV4A 3ZOHA 1G77A 4HMTA 1XXOA 3R5RA 1G76A 3EC6A 1USCA 4Z85A 1G78A 2HTIA 4L82A 3U0IA 2QCKA 3DMBA 2AQ6A 1Y30A 2HHZA 1VL7A 2IG6A 3CB0A 3HY8A 3FKHA 3IN6A 2I51A 1G79A 1FLMA 3A20A 4XJ2A 2X1JA 3DNHA 2D37A 3R5YA 3DB0A 1W3PA 4HMVA 1YLNA 4F07A 3VY5A 2QEAA 1W3RA 2IABA 2E83A 4HMUA 3H96A 3R5LA 1WGBA 2HTDA 1EJEA 3PFTA 3K86A 3CP3A 3E4VA 2I02A 1WLKA 3VY2A 2IMLA 2A2JA 1T9MA 1WLIA 1USFA 4YWNA 1DNLA 1CI0A 2D38A 2R6VA 3U34A 3U35A 4HMSA 4YBNA 4HMWA 4QVBA 3A6QA 3ZODA 3TGVA 3BNKA 3NFWA 2RE7A 3VYAA 5ESCA 3AWHA 1I0RA 2ASFA 4R82A 2ARZA 2RDEA 1RFEA 2ECUA 1AXJA 3ZOFA 3A6RA 4HMXA 3HMZA 1RZ0A 2FG9A 3U5WA 2HQ7A 5CHEC 1RZ1A 2FHQA 1JNWA 1I0SA 1W3OA 1YOAA 2Q9KA 3ZOGA 2ECRA 4IRAA 2X1KA 3K88A 4XHYA 3R5PA 2D5MA 3ZOCA 4Y9IA 2HQ9A 4N7RC 1W3QA 2NR4A 3RH7A 2PTFA 3AMFA 2ED4A 3FGEA 3R5ZA 3SWJA 3BPKA 5JABA 3BA3A 3KYGA 2VPAA 3K87A 4ZKYA 2OL5A 1TY9A 2FURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F7E A;  3GAS A;  3ZOE A;  4HX6 A;  5BNC A;  2R0X A;  1NRG A;  1W9A A;  5CHO A;  2GJG A;  3KYF A;  3R5W A;  2OU5 A;  2D36 A;  3B5M A;  1XHN A;  1WV4 A;  3ZOH A;  1G77 A;  4HMT A;  1XXO A;  3R5R A;  1G76 A;  3EC6 A;  1USC A;  4Z85 A;  1G78 A;  2HTI A;  4L82 A;  3U0I A;  2QCK A;  3DMB A;  2AQ6 A;  1Y30 A;  2HHZ A;  1VL7 A;  2IG6 A;  3CB0 A;  3HY8 A;  3FKH A;  3IN6 A;  2I51 A;  1G79 A;  1FLM A;  3A20 A;  4XJ2 A;  2X1J A;  3DNH A;  2D37 A;  3R5Y A;  3DB0 A;  1W3P A;  4HMV A;  1YLN A;  4F07 A;  3VY5 A;  2QEA A;  1W3R A;  2IAB A;  2E83 A;  4HMU A;  3H96 A;  3R5L A;  1WGB A;  2HTD A;  1EJE A;  3PFT A;  3K86 A;  3CP3 A;  3E4V A;  2I02 A;  1WLK A;  3VY2 A;  2IML A;  2A2J A;  1T9M A;  1WLI A;  1USF A;  4YWN A;  1DNL A;  1CI0 A;  2D38 A;  2R6V A;  3U34 A;  3U35 A;  4HMS A;  4YBN A;  4HMW A;  4QVB A;  3A6Q A;  3ZOD A;  3TGV A;  3BNK A;  3NFW A;  2RE7 A;  3VYA A;  5ESC A;  3AWH A;  1I0R A;  2ASF A;  4R82 A;  2ARZ A;  2RDE A;  1RFE A;  2ECU A;  1AXJ A;  3ZOF A;  3A6R A;  4HMX A;  3HMZ A;  1RZ0 A;  2FG9 A;  3U5W A;  2HQ7 A;  5CHE C;  1RZ1 A;  2FHQ A;  1JNW A;  1I0S A;  1W3O A;  1YOA A;  2Q9K A;  3ZOG A;  2ECR A;  4IRA A;  2X1K A;  3K88 A;  4XHY A;  3R5P A;  2D5M A;  3ZOC A;  4Y9I A;  2HQ9 A;  4N7R C;  1W3Q A;  2NR4 A;  3RH7 A;  2PTF A;  3AMF A;  2ED4 A;  3FGE A;  3R5Z A;  3SWJ A;  3BPK A;  5JAB A;  3BA3 A;  3KYG A;  2VPA A;  3K87 A;  4ZKY A;  2OL5 A;  1TY9 A;  2FUR A; 
#chains in the Genus database with same CATH topology
 3F7E A;  3GAS A;  3ZOE A;  4HX6 A;  5BNC A;  2R0X A;  4TV4 A;  1NRG A;  1W9A A;  5CHO A;  2GJG A;  3HE1 A;  3KYF A;  3R5W A;  2OU5 A;  2D36 A;  3B5M A;  1XHN A;  1WV4 A;  3ZOH A;  1G77 A;  4HMT A;  1XXO A;  3R5R A;  1G76 A;  3EC6 A;  1USC A;  4Z85 A;  1G78 A;  2HTI A;  4L82 A;  3U0I A;  2QCK A;  3DMB A;  2P5Z X;  2AQ6 A;  1Y30 A;  2HHZ A;  1VL7 A;  2IG6 A;  3CB0 A;  3HY8 A;  3FKH A;  3IN6 A;  2I51 A;  1G79 A;  1FLM A;  3A20 A;  4XJ2 A;  2L1T A;  2X1J A;  3DNH A;  2D37 A;  3R5Y A;  3DB0 A;  1W3P A;  2GUJ A;  4HMV A;  1YLN A;  4HKH A;  4F07 A;  3VY5 A;  2QEA A;  1W3R A;  2IAB A;  2E83 A;  4HMU A;  3EAA A;  4MTK A;  3H96 A;  3R5L A;  1WGB A;  2HTD A;  1EJE A;  3PFT A;  3K86 A;  3CP3 A;  3E4V A;  2I02 A;  1WLK A;  3VY2 A;  2IML A;  2A2J A;  1T9M A;  1WLI A;  1USF A;  4YWN A;  1DNL A;  1CI0 A;  3V4H A;  2D38 A;  2R6V A;  3U34 A;  3U35 A;  4HMS A;  4YBN A;  4HMW A;  4QVB A;  3A6Q A;  3ZOD A;  3TGV A;  3BNK A;  3NFW A;  2RE7 A;  3VYA A;  5ESC A;  3AWH A;  1I0R A;  2ASF A;  4R82 A;  2ARZ A;  2RDE A;  1RFE A;  2ECU A;  1AXJ A;  3ZOF A;  3A6R A;  4HMX A;  3HMZ A;  1RZ0 A;  2FG9 A;  3U5W A;  2HQ7 A;  5CHE C;  1RZ1 A;  2FHQ A;  4UHV A;  1JNW A;  1I0S A;  1W3O A;  1YOA A;  4W64 A;  2Q9K A;  3ZOG A;  2ECR A;  4IRA A;  2X1K A;  3K88 A;  4XHY A;  3R5P A;  2D5M A;  3ZOC A;  4Y9I A;  2HQ9 A;  4N7R C;  1W3Q A;  2NR4 A;  3RH7 A;  2PTF A;  3AMF A;  2ED4 A;  3FGE A;  3R5Z A;  3SWJ A;  3BPK A;  2K4Q A;  5JAB A;  3BA3 A;  3KYG A;  2VPA A;  1Y12 A;  3K87 A;  4ZKY A;  2OL5 A;  1TY9 A;  2FUR A; 
#chains in the Genus database with same CATH homology
 3F7E A;  3GAS A;  3ZOE A;  4HX6 A;  5BNC A;  2R0X A;  1NRG A;  1W9A A;  5CHO A;  2GJG A;  3KYF A;  3R5W A;  2OU5 A;  2D36 A;  3B5M A;  1XHN A;  1WV4 A;  3ZOH A;  1G77 A;  4HMT A;  1XXO A;  3R5R A;  1G76 A;  3EC6 A;  1USC A;  4Z85 A;  1G78 A;  2HTI A;  4L82 A;  3U0I A;  2QCK A;  3DMB A;  2AQ6 A;  1Y30 A;  2HHZ A;  1VL7 A;  2IG6 A;  3CB0 A;  3HY8 A;  3FKH A;  3IN6 A;  2I51 A;  1G79 A;  1FLM A;  3A20 A;  4XJ2 A;  2X1J A;  3DNH A;  2D37 A;  3R5Y A;  3DB0 A;  1W3P A;  4HMV A;  1YLN A;  4F07 A;  3VY5 A;  2QEA A;  1W3R A;  2IAB A;  2E83 A;  4HMU A;  3H96 A;  3R5L A;  1WGB A;  2HTD A;  1EJE A;  3PFT A;  3K86 A;  3CP3 A;  3E4V A;  2I02 A;  1WLK A;  3VY2 A;  2IML A;  2A2J A;  1T9M A;  1WLI A;  1USF A;  4YWN A;  1DNL A;  1CI0 A;  2D38 A;  2R6V A;  3U34 A;  3U35 A;  4HMS A;  4YBN A;  4HMW A;  4QVB A;  3A6Q A;  3ZOD A;  3TGV A;  3BNK A;  3NFW A;  2RE7 A;  3VYA A;  5ESC A;  3AWH A;  1I0R A;  2ASF A;  4R82 A;  2ARZ A;  2RDE A;  1RFE A;  2ECU A;  1AXJ A;  3ZOF A;  3A6R A;  4HMX A;  3HMZ A;  1RZ0 A;  2FG9 A;  3U5W A;  2HQ7 A;  5CHE C;  1RZ1 A;  2FHQ A;  1JNW A;  1I0S A;  1W3O A;  1YOA A;  2Q9K A;  3ZOG A;  2ECR A;  4IRA A;  2X1K A;  3K88 A;  4XHY A;  3R5P A;  2D5M A;  3ZOC A;  4Y9I A;  2HQ9 A;  4N7R C;  1W3Q A;  2NR4 A;  3RH7 A;  2PTF A;  3AMF A;  2ED4 A;  3FGE A;  3R5Z A;  3SWJ A;  3BPK A;  5JAB A;  3BA3 A;  3KYG A;  2VPA A;  3K87 A;  4ZKY A;  2OL5 A;  1TY9 A;  2FUR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.