3U0I | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	143
structure length	125
Chain Sequence	LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWKPVFFRVDIEKLSGHQAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of a probable FAD-binding, putative uncharacterized protein from Brucella melitensis rcsb
molecule keywords	probable FAD-binding, putative uncharacterized protein
molecule tags	Unknown function
source organism	Brucella melitensis
total genus	31
structure length	125
sequence length	143
ec nomenclature
pdb deposition date	2011-09-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12900	Pyridox_ox_2	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	3u0iA00

2QEAA 1W3RA 3R5WA 3FGEA 3K88A 4Z85A 2HHZA 2IABA 4IRAA 2RE7A 4N7RC 3NFWA 2A2JA 2I02A 1G77A 3A6QA 5ESCA 2D37A 1G78A 2RDEA 3R5YA 3BA3A 1VL7A 4YWNA 3ZOGA 2HTIA 3PFTA 2AQ6A 3R5PA 4F07A 3A20A 3TGVA 2X1JA 1I0SA 1AXJA 1Y30A 3BPKA 3VY2A 2IMLA 1W3OA 4HMTA 4HMSA 2D38A 2ECUA 1FLMA 1TY9A 5CHEC 4R82A 1USFA 3CP3A 2GJGA 3U35A 1YOAA 4XHYA 1WGBA 1WLKA 1WLIA 3DNHA 3ZODA 2ED4A 2IG6A 3K86A 3KYGA 3U0IA 2FHQA 1W9AA 1DNLA 4Y9IA 2ASFA 3AWHA 1EJEA 4L82A 4YBNA 2FG9A 3K87A 3R5ZA 3HMZA 4HMWA 3VY5A 1XXOA 4HMVA 3AMFA 4XJ2A 2QCKA 4HX6A 2OU5A 3E4VA 3DMBA 2HQ7A 3F7EA 2X1KA 4HMUA 5JABA 1JNWA 2I51A 2D5MA 3BNKA 1W3QA 3A6RA 3H96A 1XHNA 3EC6A 3U5WA 3DB0A 3B5MA 1WV4A 1I0RA 3CB0A 2FURA 2Q9KA 1NRGA 3ZOFA 3GASA 3RH7A 2E83A 5BNCA 2NR4A 1RZ1A 2ECRA 3SWJA 2OL5A 2ARZA 2R0XA 2VPAA 4QVBA 2PTFA 3FKHA 3R5RA 1RZ0A 1USCA 1CI0A 3KYFA 4HMXA 1G76A 4ZKYA 3R5LA 1T9MA 3ZOCA 2HQ9A 1W3PA 3VYAA 1YLNA 3U34A 1G79A 2HTDA 3IN6A 5CHOA 3ZOEA 2R6VA 2D36A 3ZOHA 3HY8A 1RFEA
chains in the Genus database with same CATH superfamily

2QEAA 1W3RA 3R5WA 3FGEA 4UHVA 3K88A 4Z85A 2HHZA 1Y12A 2IABA 4IRAA 2RE7A 4N7RC 3NFWA 2A2JA 2I02A 1G77A 3A6QA 5ESCA 2D37A 1G78A 2L1TA 2RDEA 3R5YA 3BA3A 1VL7A 4YWNA 3ZOGA 2HTIA 3PFTA 2AQ6A 3R5PA 4F07A 3A20A 3TGVA 2X1JA 1I0SA 1AXJA 1Y30A 3BPKA 3VY2A 2IMLA 1W3OA 4HMTA 4HMSA 2D38A 2ECUA 1FLMA 3EAAA 1TY9A 5CHEC 4R82A 1USFA 3CP3A 2GJGA 3U35A 1YOAA 4XHYA 1WGBA 1WLKA 1WLIA 3DNHA 3ZODA 2ED4A 2IG6A 3K86A 3KYGA 3U0IA 2FHQA 1W9AA 1DNLA 4Y9IA 3HE1A 2ASFA 3AWHA 1EJEA 4L82A 4YBNA 2P5ZX 2FG9A 3K87A 3R5ZA 3HMZA 4HMWA 3VY5A 1XXOA 4HMVA 3AMFA 4XJ2A 2QCKA 4HX6A 2OU5A 3E4VA 3DMBA 2HQ7A 3F7EA 2X1KA 4HMUA 5JABA 1JNWA 2I51A 2D5MA 3BNKA 1W3QA 3A6RA 4HKHA 3H96A 1XHNA 2K4QA 3EC6A 4TV4A 3U5WA 4MTKA 3DB0A 3B5MA 1WV4A 1I0RA 3CB0A 2FURA 2Q9KA 1NRGA 3ZOFA 3GASA 3RH7A 2E83A 5BNCA 4W64A 2NR4A 1RZ1A 2ECRA 3SWJA 2OL5A 3V4HA 2ARZA 2R0XA 2VPAA 4QVBA 2PTFA 3FKHA 3R5RA 1RZ0A 1USCA 2GUJA 1CI0A 3KYFA 4HMXA 1G76A 4ZKYA 3R5LA 1T9MA 3ZOCA 2HQ9A 1W3PA 3VYAA 1YLNA 3U34A 1G79A 2HTDA 3IN6A 5CHOA 3ZOEA 2R6VA 2D36A 3ZOHA 3HY8A 1RFEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2QEA A;  1W3R A;  3R5W A;  3FGE A;  3K88 A;  4Z85 A;  2HHZ A;  2IAB A;  4IRA A;  2RE7 A;  4N7R C;  3NFW A;  2A2J A;  2I02 A;  1G77 A;  3A6Q A;  5ESC A;  2D37 A;  1G78 A;  2RDE A;  3R5Y A;  3BA3 A;  1VL7 A;  4YWN A;  3ZOG A;  2HTI A;  3PFT A;  2AQ6 A;  3R5P A;  4F07 A;  3A20 A;  3TGV A;  2X1J A;  1I0S A;  1AXJ A;  1Y30 A;  3BPK A;  3VY2 A;  2IML A;  1W3O A;  4HMT A;  4HMS A;  2D38 A;  2ECU A;  1FLM A;  1TY9 A;  5CHE C;  4R82 A;  1USF A;  3CP3 A;  2GJG A;  3U35 A;  1YOA A;  4XHY A;  1WGB A;  1WLK A;  1WLI A;  3DNH A;  3ZOD A;  2ED4 A;  2IG6 A;  3K86 A;  3KYG A;  3U0I A;  2FHQ A;  1W9A A;  1DNL A;  4Y9I A;  2ASF A;  3AWH A;  1EJE A;  4L82 A;  4YBN A;  2FG9 A;  3K87 A;  3R5Z A;  3HMZ A;  4HMW A;  3VY5 A;  1XXO A;  4HMV A;  3AMF A;  4XJ2 A;  2QCK A;  4HX6 A;  2OU5 A;  3E4V A;  3DMB A;  2HQ7 A;  3F7E A;  2X1K A;  4HMU A;  5JAB A;  1JNW A;  2I51 A;  2D5M A;  3BNK A;  1W3Q A;  3A6R A;  3H96 A;  1XHN A;  3EC6 A;  3U5W A;  3DB0 A;  3B5M A;  1WV4 A;  1I0R A;  3CB0 A;  2FUR A;  2Q9K A;  1NRG A;  3ZOF A;  3GAS A;  3RH7 A;  2E83 A;  5BNC A;  2NR4 A;  1RZ1 A;  2ECR A;  3SWJ A;  2OL5 A;  2ARZ A;  2R0X A;  2VPA A;  4QVB A;  2PTF A;  3FKH A;  3R5R A;  1RZ0 A;  1USC A;  1CI0 A;  3KYF A;  4HMX A;  1G76 A;  4ZKY A;  3R5L A;  1T9M A;  3ZOC A;  2HQ9 A;  1W3P A;  3VYA A;  1YLN A;  3U34 A;  1G79 A;  2HTD A;  3IN6 A;  5CHO A;  3ZOE A;  2R6V A;  2D36 A;  3ZOH A;  3HY8 A;  1RFE A; 
#chains in the Genus database with same CATH topology
 2QEA A;  1W3R A;  3R5W A;  3FGE A;  4UHV A;  3K88 A;  4Z85 A;  2HHZ A;  1Y12 A;  2IAB A;  4IRA A;  2RE7 A;  4N7R C;  3NFW A;  2A2J A;  2I02 A;  1G77 A;  3A6Q A;  5ESC A;  2D37 A;  1G78 A;  2L1T A;  2RDE A;  3R5Y A;  3BA3 A;  1VL7 A;  4YWN A;  3ZOG A;  2HTI A;  3PFT A;  2AQ6 A;  3R5P A;  4F07 A;  3A20 A;  3TGV A;  2X1J A;  1I0S A;  1AXJ A;  1Y30 A;  3BPK A;  3VY2 A;  2IML A;  1W3O A;  4HMT A;  4HMS A;  2D38 A;  2ECU A;  1FLM A;  3EAA A;  1TY9 A;  5CHE C;  4R82 A;  1USF A;  3CP3 A;  2GJG A;  3U35 A;  1YOA A;  4XHY A;  1WGB A;  1WLK A;  1WLI A;  3DNH A;  3ZOD A;  2ED4 A;  2IG6 A;  3K86 A;  3KYG A;  3U0I A;  2FHQ A;  1W9A A;  1DNL A;  4Y9I A;  3HE1 A;  2ASF A;  3AWH A;  1EJE A;  4L82 A;  4YBN A;  2P5Z X;  2FG9 A;  3K87 A;  3R5Z A;  3HMZ A;  4HMW A;  3VY5 A;  1XXO A;  4HMV A;  3AMF A;  4XJ2 A;  2QCK A;  4HX6 A;  2OU5 A;  3E4V A;  3DMB A;  2HQ7 A;  3F7E A;  2X1K A;  4HMU A;  5JAB A;  1JNW A;  2I51 A;  2D5M A;  3BNK A;  1W3Q A;  3A6R A;  4HKH A;  3H96 A;  1XHN A;  2K4Q A;  3EC6 A;  4TV4 A;  3U5W A;  4MTK A;  3DB0 A;  3B5M A;  1WV4 A;  1I0R A;  3CB0 A;  2FUR A;  2Q9K A;  1NRG A;  3ZOF A;  3GAS A;  3RH7 A;  2E83 A;  5BNC A;  4W64 A;  2NR4 A;  1RZ1 A;  2ECR A;  3SWJ A;  2OL5 A;  3V4H A;  2ARZ A;  2R0X A;  2VPA A;  4QVB A;  2PTF A;  3FKH A;  3R5R A;  1RZ0 A;  1USC A;  2GUJ A;  1CI0 A;  3KYF A;  4HMX A;  1G76 A;  4ZKY A;  3R5L A;  1T9M A;  3ZOC A;  2HQ9 A;  1W3P A;  3VYA A;  1YLN A;  3U34 A;  1G79 A;  2HTD A;  3IN6 A;  5CHO A;  3ZOE A;  2R6V A;  2D36 A;  3ZOH A;  3HY8 A;  1RFE A; 
#chains in the Genus database with same CATH homology
 2QEA A;  1W3R A;  3R5W A;  3FGE A;  3K88 A;  4Z85 A;  2HHZ A;  2IAB A;  4IRA A;  2RE7 A;  4N7R C;  3NFW A;  2A2J A;  2I02 A;  1G77 A;  3A6Q A;  5ESC A;  2D37 A;  1G78 A;  2RDE A;  3R5Y A;  3BA3 A;  1VL7 A;  4YWN A;  3ZOG A;  2HTI A;  3PFT A;  2AQ6 A;  3R5P A;  4F07 A;  3A20 A;  3TGV A;  2X1J A;  1I0S A;  1AXJ A;  1Y30 A;  3BPK A;  3VY2 A;  2IML A;  1W3O A;  4HMT A;  4HMS A;  2D38 A;  2ECU A;  1FLM A;  1TY9 A;  5CHE C;  4R82 A;  1USF A;  3CP3 A;  2GJG A;  3U35 A;  1YOA A;  4XHY A;  1WGB A;  1WLK A;  1WLI A;  3DNH A;  3ZOD A;  2ED4 A;  2IG6 A;  3K86 A;  3KYG A;  3U0I A;  2FHQ A;  1W9A A;  1DNL A;  4Y9I A;  2ASF A;  3AWH A;  1EJE A;  4L82 A;  4YBN A;  2FG9 A;  3K87 A;  3R5Z A;  3HMZ A;  4HMW A;  3VY5 A;  1XXO A;  4HMV A;  3AMF A;  4XJ2 A;  2QCK A;  4HX6 A;  2OU5 A;  3E4V A;  3DMB A;  2HQ7 A;  3F7E A;  2X1K A;  4HMU A;  5JAB A;  1JNW A;  2I51 A;  2D5M A;  3BNK A;  1W3Q A;  3A6R A;  3H96 A;  1XHN A;  3EC6 A;  3U5W A;  3DB0 A;  3B5M A;  1WV4 A;  1I0R A;  3CB0 A;  2FUR A;  2Q9K A;  1NRG A;  3ZOF A;  3GAS A;  3RH7 A;  2E83 A;  5BNC A;  2NR4 A;  1RZ1 A;  2ECR A;  3SWJ A;  2OL5 A;  2ARZ A;  2R0X A;  2VPA A;  4QVB A;  2PTF A;  3FKH A;  3R5R A;  1RZ0 A;  1USC A;  1CI0 A;  3KYF A;  4HMX A;  1G76 A;  4ZKY A;  3R5L A;  1T9M A;  3ZOC A;  2HQ9 A;  1W3P A;  3VYA A;  1YLN A;  3U34 A;  1G79 A;  2HTD A;  3IN6 A;  5CHO A;  3ZOE A;  2R6V A;  2D36 A;  3ZOH A;  3HY8 A;  1RFE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3U0IA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations