3U0IA

Crystal structure of a probable fad-binding, putative uncharacterized protein from brucella melitensis
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
143
structure length
125
Chain Sequence
LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWKPVFFRVDIEKLSGHQAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (8-17)S7 (76-88)S6 (63-73)EMPTYS3 (30-37)S2 (20-27)TIV1 (26-29)S5 (44-49)S4 (39-41)TIV2 (40-43)AH3 (94-102)AH2 (52-60)TII1 (102-105)S1 (3-5)3H1 (91-93)TI1 (73-76)Updating...
connected with : NaN
molecule tags Unknown function
source organism Brucella melitensis
publication title Crystal Structure of a probable FAD-binding, putative uncharacterized protein from Brucella melitensis
rcsb
molecule keywords probable FAD-binding, putative uncharacterized protein
total genus 31
structure length 125
sequence length 143
ec nomenclature
pdb deposition date 2011-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3u0iA00
3A20A 1RZ0A 1W3PA 1FLMA 2Q9KA 3R5YA 3K86A 3HMZA 1USFA 2HTDA 2NR4A 3NFWA 2I02A 2X1JA 4YWNA 2D38A 4QVBA 3FKHA 4HMWA 1Y30A 3PFTA 2HTIA 1WGBA 3KYGA 3ZOCA 1W3RA 2R6VA 2IG6A 3CB0A 1WLKA 3K87A 5JABA 4HMSA 5ESCA 3R5PA 2D36A 2ED4A 3R5RA 3BNKA 4L82A 1YOAA 4HMTA 4HMXA 3KYFA 2HHZA 2HQ7A 3U35A 2QEAA 1G77A 3DB0A 1W9AA 2AQ6A 3RH7A 1TY9A 4IRAA 2R0XA 2RDEA 5CHOA 1NRGA 3BPKA 1W3OA 4HX6A 3ZOHA 3ZODA 1WLIA 1JNWA 3GASA 3SWJA 3R5WA 3ZOGA 1VL7A 2D5MA 2FHQA 3R5ZA 2ECRA 3ZOFA 2E83A 4F07A 4XJ2A 2FURA 4N7RC 2FG9A 4XHYA 2VPAA 2X1KA 4Y9IA 2ARZA 2ASFA 4R82A 1T9MA 2OL5A 5CHEC 1RZ1A 3EC6A 1W3QA 3H96A 3FGEA 2GJGA 3DMBA 3K88A 1YLNA 2HQ9A 1DNLA 4HMUA 1WV4A 2OU5A 3VYAA 1G78A 5BNCA 3BA3A 2IMLA 2A2JA 2PTFA 3U0IA 3IN6A 3A6RA 3TGVA 1XXOA 3R5LA 3B5MA 1AXJA 4YBNA 3AWHA 3AMFA 1I0RA 4HMVA 3U5WA 4ZKYA 3ZOEA 1USCA 2ECUA 2RE7A 1G79A 1G76A 3U34A 3VY2A 1CI0A 2QCKA 2IABA 1RFEA 3DNHA 3A6QA 1EJEA 3F7EA 1XHNA 2I51A 3CP3A 3E4VA 3VY5A 4Z85A 2D37A 3HY8A 1I0SA
chains in the Genus database with same CATH superfamily
3A20A 1RZ0A 1W3PA 4MTKA 1FLMA 2Q9KA 3R5YA 3K86A 3HMZA 1USFA 2HTDA 2NR4A 3NFWA 3V4HA 2I02A 2X1JA 2GUJA 2K4QA 4YWNA 4HKHA 2D38A 4QVBA 3FKHA 4HMWA 4UHVA 1Y30A 3PFTA 2HTIA 1WGBA 3KYGA 3ZOCA 1W3RA 2R6VA 2IG6A 3CB0A 1WLKA 3K87A 5JABA 4HMSA 4W64A 5ESCA 3R5PA 2D36A 2ED4A 3R5RA 3BNKA 4L82A 1YOAA 4HMTA 4HMXA 3KYFA 2HHZA 2HQ7A 3U35A 2P5ZX 1G77A 2QEAA 3DB0A 1W9AA 2AQ6A 3RH7A 1TY9A 4IRAA 2R0XA 2RDEA 5CHOA 1NRGA 3BPKA 1W3OA 4HX6A 3ZOHA 3ZODA 1WLIA 1JNWA 3HE1A 2L1TA 3EAAA 3GASA 3SWJA 4TV4A 3R5WA 3ZOGA 1VL7A 2D5MA 2FHQA 3R5ZA 2ECRA 3ZOFA 2E83A 4F07A 4XJ2A 2FURA 4N7RC 2FG9A 4XHYA 2VPAA 2X1KA 4Y9IA 2ARZA 2ASFA 4R82A 1T9MA 2OL5A 5CHEC 1RZ1A 3EC6A 1W3QA 3H96A 3FGEA 2GJGA 3DMBA 3K88A 1YLNA 2HQ9A 1DNLA 4HMUA 1WV4A 2OU5A 3VYAA 1G78A 5BNCA 3BA3A 2IMLA 2A2JA 2PTFA 3U0IA 3IN6A 3A6RA 3TGVA 1XXOA 3R5LA 3B5MA 1AXJA 4YBNA 3AWHA 3AMFA 1I0RA 4HMVA 3U5WA 4ZKYA 3ZOEA 1USCA 2ECUA 2RE7A 1G79A 1G76A 3U34A 3VY2A 1CI0A 2QCKA 2IABA 1RFEA 3DNHA 3A6QA 1EJEA 3F7EA 1XHNA 2I51A 3CP3A 3E4VA 3VY5A 4Z85A 2D37A 3HY8A 1Y12A 1I0SA
chains in the Genus database with same CATH topology
3A20A 1RZ0A 1W3PA 1FLMA 2Q9KA 3R5YA 3K86A 3HMZA 1USFA 2HTDA 2NR4A 3NFWA 2I02A 2X1JA 4YWNA 2D38A 4QVBA 3FKHA 4HMWA 1Y30A 3PFTA 2HTIA 1WGBA 3KYGA 3ZOCA 1W3RA 2R6VA 2IG6A 3CB0A 1WLKA 3K87A 5JABA 4HMSA 5ESCA 3R5PA 2D36A 2ED4A 3R5RA 3BNKA 4L82A 1YOAA 4HMTA 4HMXA 3KYFA 2HHZA 2HQ7A 3U35A 2QEAA 1G77A 3DB0A 1W9AA 2AQ6A 3RH7A 1TY9A 4IRAA 2R0XA 2RDEA 5CHOA 1NRGA 3BPKA 1W3OA 4HX6A 3ZOHA 3ZODA 1WLIA 1JNWA 3GASA 3SWJA 3R5WA 3ZOGA 1VL7A 2D5MA 2FHQA 3R5ZA 2ECRA 3ZOFA 2E83A 4F07A 4XJ2A 2FURA 4N7RC 2FG9A 4XHYA 2VPAA 2X1KA 4Y9IA 2ARZA 2ASFA 4R82A 1T9MA 2OL5A 5CHEC 1RZ1A 3EC6A 1W3QA 3H96A 3FGEA 2GJGA 3DMBA 3K88A 1YLNA 2HQ9A 1DNLA 4HMUA 1WV4A 2OU5A 3VYAA 1G78A 5BNCA 3BA3A 2IMLA 2A2JA 2PTFA 3U0IA 3IN6A 3A6RA 3TGVA 1XXOA 3R5LA 3B5MA 1AXJA 4YBNA 3AWHA 3AMFA 1I0RA 4HMVA 3U5WA 4ZKYA 3ZOEA 1USCA 2ECUA 2RE7A 1G79A 1G76A 3U34A 3VY2A 1CI0A 2QCKA 2IABA 1RFEA 3DNHA 3A6QA 1EJEA 3F7EA 1XHNA 2I51A 3CP3A 3E4VA 3VY5A 4Z85A 2D37A 3HY8A 1I0SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A20 A;  1RZ0 A;  1W3P A;  1FLM A;  2Q9K A;  3R5Y A;  3K86 A;  3HMZ A;  1USF A;  2HTD A;  2NR4 A;  3NFW A;  2I02 A;  2X1J A;  4YWN A;  2D38 A;  4QVB A;  3FKH A;  4HMW A;  1Y30 A;  3PFT A;  2HTI A;  1WGB A;  3KYG A;  3ZOC A;  1W3R A;  2R6V A;  2IG6 A;  3CB0 A;  1WLK A;  3K87 A;  5JAB A;  4HMS A;  5ESC A;  3R5P A;  2D36 A;  2ED4 A;  3R5R A;  3BNK A;  4L82 A;  1YOA A;  4HMT A;  4HMX A;  3KYF A;  2HHZ A;  2HQ7 A;  3U35 A;  2QEA A;  1G77 A;  3DB0 A;  1W9A A;  2AQ6 A;  3RH7 A;  1TY9 A;  4IRA A;  2R0X A;  2RDE A;  5CHO A;  1NRG A;  3BPK A;  1W3O A;  4HX6 A;  3ZOH A;  3ZOD A;  1WLI A;  1JNW A;  3GAS A;  3SWJ A;  3R5W A;  3ZOG A;  1VL7 A;  2D5M A;  2FHQ A;  3R5Z A;  2ECR A;  3ZOF A;  2E83 A;  4F07 A;  4XJ2 A;  2FUR A;  4N7R C;  2FG9 A;  4XHY A;  2VPA A;  2X1K A;  4Y9I A;  2ARZ A;  2ASF A;  4R82 A;  1T9M A;  2OL5 A;  5CHE C;  1RZ1 A;  3EC6 A;  1W3Q A;  3H96 A;  3FGE A;  2GJG A;  3DMB A;  3K88 A;  1YLN A;  2HQ9 A;  1DNL A;  4HMU A;  1WV4 A;  2OU5 A;  3VYA A;  1G78 A;  5BNC A;  3BA3 A;  2IML A;  2A2J A;  2PTF A;  3U0I A;  3IN6 A;  3A6R A;  3TGV A;  1XXO A;  3R5L A;  3B5M A;  1AXJ A;  4YBN A;  3AWH A;  3AMF A;  1I0R A;  4HMV A;  3U5W A;  4ZKY A;  3ZOE A;  1USC A;  2ECU A;  2RE7 A;  1G79 A;  1G76 A;  3U34 A;  3VY2 A;  1CI0 A;  2QCK A;  2IAB A;  1RFE A;  3DNH A;  3A6Q A;  1EJE A;  3F7E A;  1XHN A;  2I51 A;  3CP3 A;  3E4V A;  3VY5 A;  4Z85 A;  2D37 A;  3HY8 A;  1I0S A; 
#chains in the Genus database with same CATH topology
 3A20 A;  1RZ0 A;  1W3P A;  4MTK A;  1FLM A;  2Q9K A;  3R5Y A;  3K86 A;  3HMZ A;  1USF A;  2HTD A;  2NR4 A;  3NFW A;  3V4H A;  2I02 A;  2X1J A;  2GUJ A;  2K4Q A;  4YWN A;  4HKH A;  2D38 A;  4QVB A;  3FKH A;  4HMW A;  4UHV A;  1Y30 A;  3PFT A;  2HTI A;  1WGB A;  3KYG A;  3ZOC A;  1W3R A;  2R6V A;  2IG6 A;  3CB0 A;  1WLK A;  3K87 A;  5JAB A;  4HMS A;  4W64 A;  5ESC A;  3R5P A;  2D36 A;  2ED4 A;  3R5R A;  3BNK A;  4L82 A;  1YOA A;  4HMT A;  4HMX A;  3KYF A;  2HHZ A;  2HQ7 A;  3U35 A;  2P5Z X;  1G77 A;  2QEA A;  3DB0 A;  1W9A A;  2AQ6 A;  3RH7 A;  1TY9 A;  4IRA A;  2R0X A;  2RDE A;  5CHO A;  1NRG A;  3BPK A;  1W3O A;  4HX6 A;  3ZOH A;  3ZOD A;  1WLI A;  1JNW A;  3HE1 A;  2L1T A;  3EAA A;  3GAS A;  3SWJ A;  4TV4 A;  3R5W A;  3ZOG A;  1VL7 A;  2D5M A;  2FHQ A;  3R5Z A;  2ECR A;  3ZOF A;  2E83 A;  4F07 A;  4XJ2 A;  2FUR A;  4N7R C;  2FG9 A;  4XHY A;  2VPA A;  2X1K A;  4Y9I A;  2ARZ A;  2ASF A;  4R82 A;  1T9M A;  2OL5 A;  5CHE C;  1RZ1 A;  3EC6 A;  1W3Q A;  3H96 A;  3FGE A;  2GJG A;  3DMB A;  3K88 A;  1YLN A;  2HQ9 A;  1DNL A;  4HMU A;  1WV4 A;  2OU5 A;  3VYA A;  1G78 A;  5BNC A;  3BA3 A;  2IML A;  2A2J A;  2PTF A;  3U0I A;  3IN6 A;  3A6R A;  3TGV A;  1XXO A;  3R5L A;  3B5M A;  1AXJ A;  4YBN A;  3AWH A;  3AMF A;  1I0R A;  4HMV A;  3U5W A;  4ZKY A;  3ZOE A;  1USC A;  2ECU A;  2RE7 A;  1G79 A;  1G76 A;  3U34 A;  3VY2 A;  1CI0 A;  2QCK A;  2IAB A;  1RFE A;  3DNH A;  3A6Q A;  1EJE A;  3F7E A;  1XHN A;  2I51 A;  3CP3 A;  3E4V A;  3VY5 A;  4Z85 A;  2D37 A;  3HY8 A;  1Y12 A;  1I0S A; 
#chains in the Genus database with same CATH homology
 3A20 A;  1RZ0 A;  1W3P A;  1FLM A;  2Q9K A;  3R5Y A;  3K86 A;  3HMZ A;  1USF A;  2HTD A;  2NR4 A;  3NFW A;  2I02 A;  2X1J A;  4YWN A;  2D38 A;  4QVB A;  3FKH A;  4HMW A;  1Y30 A;  3PFT A;  2HTI A;  1WGB A;  3KYG A;  3ZOC A;  1W3R A;  2R6V A;  2IG6 A;  3CB0 A;  1WLK A;  3K87 A;  5JAB A;  4HMS A;  5ESC A;  3R5P A;  2D36 A;  2ED4 A;  3R5R A;  3BNK A;  4L82 A;  1YOA A;  4HMT A;  4HMX A;  3KYF A;  2HHZ A;  2HQ7 A;  3U35 A;  2QEA A;  1G77 A;  3DB0 A;  1W9A A;  2AQ6 A;  3RH7 A;  1TY9 A;  4IRA A;  2R0X A;  2RDE A;  5CHO A;  1NRG A;  3BPK A;  1W3O A;  4HX6 A;  3ZOH A;  3ZOD A;  1WLI A;  1JNW A;  3GAS A;  3SWJ A;  3R5W A;  3ZOG A;  1VL7 A;  2D5M A;  2FHQ A;  3R5Z A;  2ECR A;  3ZOF A;  2E83 A;  4F07 A;  4XJ2 A;  2FUR A;  4N7R C;  2FG9 A;  4XHY A;  2VPA A;  2X1K A;  4Y9I A;  2ARZ A;  2ASF A;  4R82 A;  1T9M A;  2OL5 A;  5CHE C;  1RZ1 A;  3EC6 A;  1W3Q A;  3H96 A;  3FGE A;  2GJG A;  3DMB A;  3K88 A;  1YLN A;  2HQ9 A;  1DNL A;  4HMU A;  1WV4 A;  2OU5 A;  3VYA A;  1G78 A;  5BNC A;  3BA3 A;  2IML A;  2A2J A;  2PTF A;  3U0I A;  3IN6 A;  3A6R A;  3TGV A;  1XXO A;  3R5L A;  3B5M A;  1AXJ A;  4YBN A;  3AWH A;  3AMF A;  1I0R A;  4HMV A;  3U5W A;  4ZKY A;  3ZOE A;  1USC A;  2ECU A;  2RE7 A;  1G79 A;  1G76 A;  3U34 A;  3VY2 A;  1CI0 A;  2QCK A;  2IAB A;  1RFE A;  3DNH A;  3A6Q A;  1EJE A;  3F7E A;  1XHN A;  2I51 A;  3CP3 A;  3E4V A;  3VY5 A;  4Z85 A;  2D37 A;  3HY8 A;  1I0S A; 
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similar chains in the Genus database (?% sequence similarity)
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