3U0IA

Crystal structure of a probable fad-binding, putative uncharacterized protein from brucella melitensis
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
143
structure length
125
Chain Sequence
LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWKPVFFRVDIEKLSGHQAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (8-17)S7 (76-88)S6 (63-73)EMPTYS3 (30-37)S2 (20-27)TIV1 (26-29)S5 (44-49)S4 (39-41)TIV2 (40-43)AH3 (94-102)AH2 (52-60)TII1 (102-105)S1 (3-5)3H1 (91-93)TI1 (73-76)Updating...
connected with : NaN
molecule tags Unknown function
source organism Brucella melitensis
publication title Crystal Structure of a probable FAD-binding, putative uncharacterized protein from Brucella melitensis
rcsb
molecule keywords probable FAD-binding, putative uncharacterized protein
total genus 31
structure length 125
sequence length 143
ec nomenclature
pdb deposition date 2011-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3u0iA00
1XHNA 3EC6A 1FLMA 4Z85A 1JNWA 2D5MA 3A20A 3U5WA 1G78A 1DNLA 1T9MA 1YOAA 2A2JA 3FGEA 2ED4A 3CB0A 3HMZA 1YLNA 3PFTA 2RDEA 2QCKA 3A6RA 1WV4A 1G79A 1VL7A 4IRAA 1W9AA 1RZ1A 2NR4A 2ECUA 3VYAA 3ZOHA 3K86A 4L82A 3TGVA 4HMVA 2OU5A 3IN6A 2R6VA 1WGBA 5ESCA 2HTIA 1G77A 2FHQA 3A6QA 3ZOGA 1W3QA 2R0XA 3KYGA 1WLKA 3R5RA 3ZOCA 2FURA 3NFWA 3R5YA 4XJ2A 5CHEC 2ARZA 1WLIA 3H96A 1Y30A 3R5PA 3K87A 3DNHA 3GASA 3AMFA 1TY9A 3R5WA 2GJGA 3K88A 2X1JA 3VY2A 2IG6A 3AWHA 4QVBA 4XHYA 4HMWA 3FKHA 1RFEA 1W3RA 2PTFA 3ZODA 3ZOEA 1I0RA 1NRGA 3BNKA 2I51A 3E4VA 1EJEA 3R5ZA 1W3PA 4HMSA 2D37A 3CP3A 3RH7A 1XXOA 3BA3A 3DB0A 1AXJA 3F7EA 5CHOA 4HX6A 4YBNA 3KYFA 2HHZA 3ZOFA 5BNCA 3HY8A 1W3OA 2HQ9A 3BPKA 2VPAA 2HQ7A 4Y9IA 4F07A 3U35A 4HMXA 3SWJA 2ASFA 3DMBA 1USFA 3U0IA 1I0SA 2X1KA 4N7RC 2ECRA 1USCA 2RE7A 3U34A 2I02A 2D36A 1RZ0A 2Q9KA 1CI0A 2E83A 2IMLA 3B5MA 4ZKYA 4R82A 1G76A 4YWNA 5JABA 4HMTA 2D38A 2FG9A 2IABA 2OL5A 3VY5A 3R5LA 2HTDA 2AQ6A 4HMUA 2QEAA
chains in the Genus database with same CATH superfamily
1XHNA 3EC6A 1FLMA 4Z85A 4HKHA 1JNWA 2D5MA 3A20A 2GUJA 1G78A 1DNLA 1T9MA 1YOAA 3U5WA 2A2JA 3FGEA 2ED4A 3CB0A 3HMZA 1YLNA 3PFTA 2RDEA 2QCKA 3A6RA 1WV4A 1G79A 1VL7A 4IRAA 1W9AA 1RZ1A 2NR4A 2ECUA 3VYAA 3ZOHA 3K86A 4L82A 3TGVA 4HMVA 2OU5A 3IN6A 2R6VA 1WGBA 5ESCA 2HTIA 1G77A 2FHQA 3A6QA 3ZOGA 1W3QA 2R0XA 3KYGA 1WLKA 3R5RA 3ZOCA 2FURA 3NFWA 3R5YA 4XJ2A 5CHEC 2ARZA 1WLIA 3H96A 1Y30A 3R5PA 3K87A 3DNHA 3GASA 3AMFA 4MTKA 1TY9A 3R5WA 2GJGA 3K88A 2X1JA 3VY2A 2IG6A 3AWHA 3HE1A 4QVBA 4XHYA 4HMWA 3FKHA 1RFEA 1W3RA 2PTFA 3ZODA 3ZOEA 1I0RA 1NRGA 3BNKA 2I51A 3E4VA 1EJEA 3R5ZA 1W3PA 4HMSA 2D37A 3CP3A 4TV4A 3RH7A 1XXOA 3BA3A 3DB0A 2K4QA 3F7EA 3V4HA 1AXJA 5CHOA 2L1TA 4HX6A 4YBNA 3KYFA 4W64A 2HHZA 3ZOFA 5BNCA 3HY8A 1W3OA 2HQ9A 3BPKA 2VPAA 2HQ7A 4Y9IA 4F07A 3U35A 4HMXA 3SWJA 3EAAA 1Y12A 2ASFA 3DMBA 1USFA 3U0IA 1I0SA 2X1KA 4N7RC 2ECRA 1USCA 2RE7A 3U34A 2I02A 2D36A 1RZ0A 2Q9KA 1CI0A 2E83A 2IMLA 3B5MA 4ZKYA 4R82A 1G76A 4YWNA 2P5ZX 5JABA 4HMTA 2D38A 2FG9A 2IABA 2OL5A 4UHVA 3R5LA 3VY5A 2HTDA 2AQ6A 4HMUA 2QEAA
chains in the Genus database with same CATH topology
1XHNA 3EC6A 1FLMA 4Z85A 1JNWA 2D5MA 3A20A 3U5WA 1G78A 1DNLA 1T9MA 1YOAA 2A2JA 3FGEA 2ED4A 3CB0A 3HMZA 1YLNA 3PFTA 2RDEA 2QCKA 3A6RA 1WV4A 1G79A 1VL7A 4IRAA 1W9AA 1RZ1A 2NR4A 2ECUA 3VYAA 3ZOHA 3K86A 4L82A 3TGVA 4HMVA 2OU5A 3IN6A 2R6VA 1WGBA 5ESCA 2HTIA 1G77A 2FHQA 3A6QA 3ZOGA 1W3QA 2R0XA 3KYGA 1WLKA 3R5RA 3ZOCA 2FURA 3NFWA 3R5YA 4XJ2A 5CHEC 2ARZA 1WLIA 3H96A 1Y30A 3R5PA 3K87A 3DNHA 3GASA 3AMFA 1TY9A 3R5WA 2GJGA 3K88A 2X1JA 3VY2A 2IG6A 3AWHA 4QVBA 4XHYA 4HMWA 3FKHA 1RFEA 1W3RA 2PTFA 3ZODA 3ZOEA 1I0RA 1NRGA 3BNKA 2I51A 3E4VA 1EJEA 3R5ZA 1W3PA 4HMSA 2D37A 3CP3A 3RH7A 1XXOA 3BA3A 3DB0A 1AXJA 3F7EA 5CHOA 4HX6A 4YBNA 3KYFA 2HHZA 3ZOFA 5BNCA 3HY8A 1W3OA 2HQ9A 3BPKA 2VPAA 2HQ7A 4Y9IA 4F07A 3U35A 4HMXA 3SWJA 2ASFA 3DMBA 1USFA 3U0IA 1I0SA 2X1KA 4N7RC 2ECRA 1USCA 2RE7A 3U34A 2I02A 2D36A 1RZ0A 2Q9KA 1CI0A 2E83A 2IMLA 3B5MA 4ZKYA 4R82A 1G76A 4YWNA 5JABA 4HMTA 2D38A 2FG9A 2IABA 2OL5A 3VY5A 3R5LA 2HTDA 2AQ6A 4HMUA 2QEAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XHN A;  3EC6 A;  1FLM A;  4Z85 A;  1JNW A;  2D5M A;  3A20 A;  3U5W A;  1G78 A;  1DNL A;  1T9M A;  1YOA A;  2A2J A;  3FGE A;  2ED4 A;  3CB0 A;  3HMZ A;  1YLN A;  3PFT A;  2RDE A;  2QCK A;  3A6R A;  1WV4 A;  1G79 A;  1VL7 A;  4IRA A;  1W9A A;  1RZ1 A;  2NR4 A;  2ECU A;  3VYA A;  3ZOH A;  3K86 A;  4L82 A;  3TGV A;  4HMV A;  2OU5 A;  3IN6 A;  2R6V A;  1WGB A;  5ESC A;  2HTI A;  1G77 A;  2FHQ A;  3A6Q A;  3ZOG A;  1W3Q A;  2R0X A;  3KYG A;  1WLK A;  3R5R A;  3ZOC A;  2FUR A;  3NFW A;  3R5Y A;  4XJ2 A;  5CHE C;  2ARZ A;  1WLI A;  3H96 A;  1Y30 A;  3R5P A;  3K87 A;  3DNH A;  3GAS A;  3AMF A;  1TY9 A;  3R5W A;  2GJG A;  3K88 A;  2X1J A;  3VY2 A;  2IG6 A;  3AWH A;  4QVB A;  4XHY A;  4HMW A;  3FKH A;  1RFE A;  1W3R A;  2PTF A;  3ZOD A;  3ZOE A;  1I0R A;  1NRG A;  3BNK A;  2I51 A;  3E4V A;  1EJE A;  3R5Z A;  1W3P A;  4HMS A;  2D37 A;  3CP3 A;  3RH7 A;  1XXO A;  3BA3 A;  3DB0 A;  1AXJ A;  3F7E A;  5CHO A;  4HX6 A;  4YBN A;  3KYF A;  2HHZ A;  3ZOF A;  5BNC A;  3HY8 A;  1W3O A;  2HQ9 A;  3BPK A;  2VPA A;  2HQ7 A;  4Y9I A;  4F07 A;  3U35 A;  4HMX A;  3SWJ A;  2ASF A;  3DMB A;  1USF A;  3U0I A;  1I0S A;  2X1K A;  4N7R C;  2ECR A;  1USC A;  2RE7 A;  3U34 A;  2I02 A;  2D36 A;  1RZ0 A;  2Q9K A;  1CI0 A;  2E83 A;  2IML A;  3B5M A;  4ZKY A;  4R82 A;  1G76 A;  4YWN A;  5JAB A;  4HMT A;  2D38 A;  2FG9 A;  2IAB A;  2OL5 A;  3VY5 A;  3R5L A;  2HTD A;  2AQ6 A;  4HMU A;  2QEA A; 
#chains in the Genus database with same CATH topology
 1XHN A;  3EC6 A;  1FLM A;  4Z85 A;  4HKH A;  1JNW A;  2D5M A;  3A20 A;  2GUJ A;  1G78 A;  1DNL A;  1T9M A;  1YOA A;  3U5W A;  2A2J A;  3FGE A;  2ED4 A;  3CB0 A;  3HMZ A;  1YLN A;  3PFT A;  2RDE A;  2QCK A;  3A6R A;  1WV4 A;  1G79 A;  1VL7 A;  4IRA A;  1W9A A;  1RZ1 A;  2NR4 A;  2ECU A;  3VYA A;  3ZOH A;  3K86 A;  4L82 A;  3TGV A;  4HMV A;  2OU5 A;  3IN6 A;  2R6V A;  1WGB A;  5ESC A;  2HTI A;  1G77 A;  2FHQ A;  3A6Q A;  3ZOG A;  1W3Q A;  2R0X A;  3KYG A;  1WLK A;  3R5R A;  3ZOC A;  2FUR A;  3NFW A;  3R5Y A;  4XJ2 A;  5CHE C;  2ARZ A;  1WLI A;  3H96 A;  1Y30 A;  3R5P A;  3K87 A;  3DNH A;  3GAS A;  3AMF A;  4MTK A;  1TY9 A;  3R5W A;  2GJG A;  3K88 A;  2X1J A;  3VY2 A;  2IG6 A;  3AWH A;  3HE1 A;  4QVB A;  4XHY A;  4HMW A;  3FKH A;  1RFE A;  1W3R A;  2PTF A;  3ZOD A;  3ZOE A;  1I0R A;  1NRG A;  3BNK A;  2I51 A;  3E4V A;  1EJE A;  3R5Z A;  1W3P A;  4HMS A;  2D37 A;  3CP3 A;  4TV4 A;  3RH7 A;  1XXO A;  3BA3 A;  3DB0 A;  2K4Q A;  3F7E A;  3V4H A;  1AXJ A;  5CHO A;  2L1T A;  4HX6 A;  4YBN A;  3KYF A;  4W64 A;  2HHZ A;  3ZOF A;  5BNC A;  3HY8 A;  1W3O A;  2HQ9 A;  3BPK A;  2VPA A;  2HQ7 A;  4Y9I A;  4F07 A;  3U35 A;  4HMX A;  3SWJ A;  3EAA A;  1Y12 A;  2ASF A;  3DMB A;  1USF A;  3U0I A;  1I0S A;  2X1K A;  4N7R C;  2ECR A;  1USC A;  2RE7 A;  3U34 A;  2I02 A;  2D36 A;  1RZ0 A;  2Q9K A;  1CI0 A;  2E83 A;  2IML A;  3B5M A;  4ZKY A;  4R82 A;  1G76 A;  4YWN A;  2P5Z X;  5JAB A;  4HMT A;  2D38 A;  2FG9 A;  2IAB A;  2OL5 A;  4UHV A;  3R5L A;  3VY5 A;  2HTD A;  2AQ6 A;  4HMU A;  2QEA A; 
#chains in the Genus database with same CATH homology
 1XHN A;  3EC6 A;  1FLM A;  4Z85 A;  1JNW A;  2D5M A;  3A20 A;  3U5W A;  1G78 A;  1DNL A;  1T9M A;  1YOA A;  2A2J A;  3FGE A;  2ED4 A;  3CB0 A;  3HMZ A;  1YLN A;  3PFT A;  2RDE A;  2QCK A;  3A6R A;  1WV4 A;  1G79 A;  1VL7 A;  4IRA A;  1W9A A;  1RZ1 A;  2NR4 A;  2ECU A;  3VYA A;  3ZOH A;  3K86 A;  4L82 A;  3TGV A;  4HMV A;  2OU5 A;  3IN6 A;  2R6V A;  1WGB A;  5ESC A;  2HTI A;  1G77 A;  2FHQ A;  3A6Q A;  3ZOG A;  1W3Q A;  2R0X A;  3KYG A;  1WLK A;  3R5R A;  3ZOC A;  2FUR A;  3NFW A;  3R5Y A;  4XJ2 A;  5CHE C;  2ARZ A;  1WLI A;  3H96 A;  1Y30 A;  3R5P A;  3K87 A;  3DNH A;  3GAS A;  3AMF A;  1TY9 A;  3R5W A;  2GJG A;  3K88 A;  2X1J A;  3VY2 A;  2IG6 A;  3AWH A;  4QVB A;  4XHY A;  4HMW A;  3FKH A;  1RFE A;  1W3R A;  2PTF A;  3ZOD A;  3ZOE A;  1I0R A;  1NRG A;  3BNK A;  2I51 A;  3E4V A;  1EJE A;  3R5Z A;  1W3P A;  4HMS A;  2D37 A;  3CP3 A;  3RH7 A;  1XXO A;  3BA3 A;  3DB0 A;  1AXJ A;  3F7E A;  5CHO A;  4HX6 A;  4YBN A;  3KYF A;  2HHZ A;  3ZOF A;  5BNC A;  3HY8 A;  1W3O A;  2HQ9 A;  3BPK A;  2VPA A;  2HQ7 A;  4Y9I A;  4F07 A;  3U35 A;  4HMX A;  3SWJ A;  2ASF A;  3DMB A;  1USF A;  3U0I A;  1I0S A;  2X1K A;  4N7R C;  2ECR A;  1USC A;  2RE7 A;  3U34 A;  2I02 A;  2D36 A;  1RZ0 A;  2Q9K A;  1CI0 A;  2E83 A;  2IML A;  3B5M A;  4ZKY A;  4R82 A;  1G76 A;  4YWN A;  5JAB A;  4HMT A;  2D38 A;  2FG9 A;  2IAB A;  2OL5 A;  3VY5 A;  3R5L A;  2HTD A;  2AQ6 A;  4HMU A;  2QEA A; 
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similar chains in the Genus database (?% sequence similarity)
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