3U0I | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	143
structure length	125
Chain Sequence	LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWKPVFFRVDIEKLSGHQAE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of a probable FAD-binding, putative uncharacterized protein from Brucella melitensis rcsb
molecule keywords	probable FAD-binding, putative uncharacterized protein
molecule tags	Unknown function
source organism	Brucella melitensis
total genus	31
structure length	125
sequence length	143
ec nomenclature
pdb deposition date	2011-09-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12900	Pyridox_ox_2	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	3u0iA00

1AXJA 2I51A 1T9MA 2AQ6A 1RZ0A 3IN6A 2D36A 1USCA 1JNWA 3BNKA 1XXOA 2IG6A 2PTFA 2ECUA 3HMZA 2I02A 4HMTA 4YBNA 3U5WA 3VY2A 3DMBA 2E83A 1WLKA 3FGEA 1Y30A 3FKHA 3ZOFA 1FLMA 2QCKA 1RFEA 2ED4A 4HMSA 3U35A 2D38A 3R5YA 3BA3A 3ZOHA 1I0SA 1G76A 2A2JA 5JABA 1YLNA 3VY5A 2HTIA 2OU5A 4XJ2A 2HHZA 3R5LA 4HMUA 3ZOGA 1CI0A 3ZODA 2OL5A 3ZOEA 4ZKYA 3AWHA 2QEAA 4HMXA 2Q9KA 3RH7A 1DNLA 1VL7A 5ESCA 3VYAA 2FG9A 3H96A 1EJEA 2IABA 3R5PA 1G77A 2FURA 4HMVA 5CHEC 2ARZA 2GJGA 4QVBA 3ZOCA 4XHYA 3SWJA 3R5ZA 4Y9IA 1WLIA 3EC6A 3NFWA 1W3QA 3K86A 1W9AA 3AMFA 1YOAA 2NR4A 4HX6A 3R5WA 2D37A 3F7EA 1I0RA 1RZ1A 1XHNA 3TGVA 5BNCA 4L82A 4R82A 3CP3A 3GASA 5CHOA 2VPAA 3K87A 4IRAA 3HY8A 3U0IA 3DNHA 2ASFA 4N7RC 3A6QA 4HMWA 3DB0A 4Z85A 2HQ7A 2RE7A 2R6VA 2X1JA 3R5RA 2ECRA 2FHQA 3U34A 3A6RA 1G78A 2HTDA 1WGBA 2RDEA 3B5MA 3K88A 3CB0A 2R0XA 1W3OA 1USFA 1W3PA 3PFTA 2IMLA 3KYGA 1NRGA 2X1KA 1W3RA 1WV4A 4F07A 4YWNA 3BPKA 2HQ9A 3E4VA 3A20A 2D5MA 1TY9A 1G79A 3KYFA
chains in the Genus database with same CATH superfamily

1AXJA 2I51A 1T9MA 2AQ6A 3EAAA 2L1TA 1RZ0A 3IN6A 2D36A 1USCA 1JNWA 3BNKA 1XXOA 2IG6A 2PTFA 2ECUA 3HMZA 2I02A 4HMTA 4YBNA 3U5WA 3VY2A 3DMBA 2E83A 1WLKA 2K4QA 3FGEA 1Y30A 4TV4A 3FKHA 3ZOFA 1FLMA 2QCKA 1RFEA 2ED4A 4HKHA 4HMSA 3U35A 2D38A 3R5YA 3BA3A 3ZOHA 1I0SA 2GUJA 1G76A 3V4HA 2A2JA 5JABA 1YLNA 3VY5A 2HTIA 2OU5A 4XJ2A 2HHZA 3R5LA 4HMUA 3ZOGA 1CI0A 3ZODA 2OL5A 3ZOEA 4ZKYA 3AWHA 2QEAA 4HMXA 2Q9KA 3RH7A 1DNLA 1VL7A 5ESCA 3VYAA 2FG9A 2P5ZX 3H96A 1EJEA 4W64A 2IABA 3R5PA 1G77A 2FURA 4HMVA 5CHEC 2ARZA 2GJGA 4QVBA 3ZOCA 4XHYA 3SWJA 3R5ZA 4Y9IA 1WLIA 3EC6A 3NFWA 4MTKA 1W3QA 3K86A 1W9AA 3AMFA 1Y12A 1YOAA 2NR4A 4HX6A 3R5WA 2D37A 3F7EA 1I0RA 1RZ1A 1XHNA 3TGVA 5BNCA 4L82A 4R82A 3CP3A 3GASA 5CHOA 2VPAA 3K87A 4IRAA 3HY8A 3U0IA 3DNHA 2ASFA 4N7RC 3A6QA 4HMWA 3DB0A 4Z85A 2HQ7A 2RE7A 2R6VA 2X1JA 3R5RA 2ECRA 2FHQA 3U34A 3A6RA 1G78A 2HTDA 1WGBA 2RDEA 3B5MA 3K88A 3CB0A 2R0XA 1W3OA 1USFA 1W3PA 3PFTA 2IMLA 3KYGA 1NRGA 2X1KA 1W3RA 1WV4A 4F07A 4YWNA 4UHVA 3BPKA 2HQ9A 3E4VA 3A20A 3HE1A 2D5MA 1TY9A 1G79A 3KYFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1AXJ A;  2I51 A;  1T9M A;  2AQ6 A;  1RZ0 A;  3IN6 A;  2D36 A;  1USC A;  1JNW A;  3BNK A;  1XXO A;  2IG6 A;  2PTF A;  2ECU A;  3HMZ A;  2I02 A;  4HMT A;  4YBN A;  3U5W A;  3VY2 A;  3DMB A;  2E83 A;  1WLK A;  3FGE A;  1Y30 A;  3FKH A;  3ZOF A;  1FLM A;  2QCK A;  1RFE A;  2ED4 A;  4HMS A;  3U35 A;  2D38 A;  3R5Y A;  3BA3 A;  3ZOH A;  1I0S A;  1G76 A;  2A2J A;  5JAB A;  1YLN A;  3VY5 A;  2HTI A;  2OU5 A;  4XJ2 A;  2HHZ A;  3R5L A;  4HMU A;  3ZOG A;  1CI0 A;  3ZOD A;  2OL5 A;  3ZOE A;  4ZKY A;  3AWH A;  2QEA A;  4HMX A;  2Q9K A;  3RH7 A;  1DNL A;  1VL7 A;  5ESC A;  3VYA A;  2FG9 A;  3H96 A;  1EJE A;  2IAB A;  3R5P A;  1G77 A;  2FUR A;  4HMV A;  5CHE C;  2ARZ A;  2GJG A;  4QVB A;  3ZOC A;  4XHY A;  3SWJ A;  3R5Z A;  4Y9I A;  1WLI A;  3EC6 A;  3NFW A;  1W3Q A;  3K86 A;  1W9A A;  3AMF A;  1YOA A;  2NR4 A;  4HX6 A;  3R5W A;  2D37 A;  3F7E A;  1I0R A;  1RZ1 A;  1XHN A;  3TGV A;  5BNC A;  4L82 A;  4R82 A;  3CP3 A;  3GAS A;  5CHO A;  2VPA A;  3K87 A;  4IRA A;  3HY8 A;  3U0I A;  3DNH A;  2ASF A;  4N7R C;  3A6Q A;  4HMW A;  3DB0 A;  4Z85 A;  2HQ7 A;  2RE7 A;  2R6V A;  2X1J A;  3R5R A;  2ECR A;  2FHQ A;  3U34 A;  3A6R A;  1G78 A;  2HTD A;  1WGB A;  2RDE A;  3B5M A;  3K88 A;  3CB0 A;  2R0X A;  1W3O A;  1USF A;  1W3P A;  3PFT A;  2IML A;  3KYG A;  1NRG A;  2X1K A;  1W3R A;  1WV4 A;  4F07 A;  4YWN A;  3BPK A;  2HQ9 A;  3E4V A;  3A20 A;  2D5M A;  1TY9 A;  1G79 A;  3KYF A; 
#chains in the Genus database with same CATH topology
 1AXJ A;  2I51 A;  1T9M A;  2AQ6 A;  3EAA A;  2L1T A;  1RZ0 A;  3IN6 A;  2D36 A;  1USC A;  1JNW A;  3BNK A;  1XXO A;  2IG6 A;  2PTF A;  2ECU A;  3HMZ A;  2I02 A;  4HMT A;  4YBN A;  3U5W A;  3VY2 A;  3DMB A;  2E83 A;  1WLK A;  2K4Q A;  3FGE A;  1Y30 A;  4TV4 A;  3FKH A;  3ZOF A;  1FLM A;  2QCK A;  1RFE A;  2ED4 A;  4HKH A;  4HMS A;  3U35 A;  2D38 A;  3R5Y A;  3BA3 A;  3ZOH A;  1I0S A;  2GUJ A;  1G76 A;  3V4H A;  2A2J A;  5JAB A;  1YLN A;  3VY5 A;  2HTI A;  2OU5 A;  4XJ2 A;  2HHZ A;  3R5L A;  4HMU A;  3ZOG A;  1CI0 A;  3ZOD A;  2OL5 A;  3ZOE A;  4ZKY A;  3AWH A;  2QEA A;  4HMX A;  2Q9K A;  3RH7 A;  1DNL A;  1VL7 A;  5ESC A;  3VYA A;  2FG9 A;  2P5Z X;  3H96 A;  1EJE A;  4W64 A;  2IAB A;  3R5P A;  1G77 A;  2FUR A;  4HMV A;  5CHE C;  2ARZ A;  2GJG A;  4QVB A;  3ZOC A;  4XHY A;  3SWJ A;  3R5Z A;  4Y9I A;  1WLI A;  3EC6 A;  3NFW A;  4MTK A;  1W3Q A;  3K86 A;  1W9A A;  3AMF A;  1Y12 A;  1YOA A;  2NR4 A;  4HX6 A;  3R5W A;  2D37 A;  3F7E A;  1I0R A;  1RZ1 A;  1XHN A;  3TGV A;  5BNC A;  4L82 A;  4R82 A;  3CP3 A;  3GAS A;  5CHO A;  2VPA A;  3K87 A;  4IRA A;  3HY8 A;  3U0I A;  3DNH A;  2ASF A;  4N7R C;  3A6Q A;  4HMW A;  3DB0 A;  4Z85 A;  2HQ7 A;  2RE7 A;  2R6V A;  2X1J A;  3R5R A;  2ECR A;  2FHQ A;  3U34 A;  3A6R A;  1G78 A;  2HTD A;  1WGB A;  2RDE A;  3B5M A;  3K88 A;  3CB0 A;  2R0X A;  1W3O A;  1USF A;  1W3P A;  3PFT A;  2IML A;  3KYG A;  1NRG A;  2X1K A;  1W3R A;  1WV4 A;  4F07 A;  4YWN A;  4UHV A;  3BPK A;  2HQ9 A;  3E4V A;  3A20 A;  3HE1 A;  2D5M A;  1TY9 A;  1G79 A;  3KYF A; 
#chains in the Genus database with same CATH homology
 1AXJ A;  2I51 A;  1T9M A;  2AQ6 A;  1RZ0 A;  3IN6 A;  2D36 A;  1USC A;  1JNW A;  3BNK A;  1XXO A;  2IG6 A;  2PTF A;  2ECU A;  3HMZ A;  2I02 A;  4HMT A;  4YBN A;  3U5W A;  3VY2 A;  3DMB A;  2E83 A;  1WLK A;  3FGE A;  1Y30 A;  3FKH A;  3ZOF A;  1FLM A;  2QCK A;  1RFE A;  2ED4 A;  4HMS A;  3U35 A;  2D38 A;  3R5Y A;  3BA3 A;  3ZOH A;  1I0S A;  1G76 A;  2A2J A;  5JAB A;  1YLN A;  3VY5 A;  2HTI A;  2OU5 A;  4XJ2 A;  2HHZ A;  3R5L A;  4HMU A;  3ZOG A;  1CI0 A;  3ZOD A;  2OL5 A;  3ZOE A;  4ZKY A;  3AWH A;  2QEA A;  4HMX A;  2Q9K A;  3RH7 A;  1DNL A;  1VL7 A;  5ESC A;  3VYA A;  2FG9 A;  3H96 A;  1EJE A;  2IAB A;  3R5P A;  1G77 A;  2FUR A;  4HMV A;  5CHE C;  2ARZ A;  2GJG A;  4QVB A;  3ZOC A;  4XHY A;  3SWJ A;  3R5Z A;  4Y9I A;  1WLI A;  3EC6 A;  3NFW A;  1W3Q A;  3K86 A;  1W9A A;  3AMF A;  1YOA A;  2NR4 A;  4HX6 A;  3R5W A;  2D37 A;  3F7E A;  1I0R A;  1RZ1 A;  1XHN A;  3TGV A;  5BNC A;  4L82 A;  4R82 A;  3CP3 A;  3GAS A;  5CHO A;  2VPA A;  3K87 A;  4IRA A;  3HY8 A;  3U0I A;  3DNH A;  2ASF A;  4N7R C;  3A6Q A;  4HMW A;  3DB0 A;  4Z85 A;  2HQ7 A;  2RE7 A;  2R6V A;  2X1J A;  3R5R A;  2ECR A;  2FHQ A;  3U34 A;  3A6R A;  1G78 A;  2HTD A;  1WGB A;  2RDE A;  3B5M A;  3K88 A;  3CB0 A;  2R0X A;  1W3O A;  1USF A;  1W3P A;  3PFT A;  2IML A;  3KYG A;  1NRG A;  2X1K A;  1W3R A;  1WV4 A;  4F07 A;  4YWN A;  3BPK A;  2HQ9 A;  3E4V A;  3A20 A;  2D5M A;  1TY9 A;  1G79 A;  3KYF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3U0IA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations