3U0IA

Crystal structure of a probable fad-binding, putative uncharacterized protein from brucella melitensis
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
143
structure length
125
Chain Sequence
LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWKPVFFRVDIEKLSGHQAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (8-17)S7 (76-88)S6 (63-73)EMPTYS3 (30-37)S2 (20-27)TIV1 (26-29)S5 (44-49)S4 (39-41)TIV2 (40-43)AH3 (94-102)AH2 (52-60)TII1 (102-105)S1 (3-5)3H1 (91-93)TI1 (73-76)Updating...
connected with : NaN
molecule tags Unknown function
source organism Brucella melitensis
publication title Crystal Structure of a probable FAD-binding, putative uncharacterized protein from Brucella melitensis
rcsb
molecule keywords probable FAD-binding, putative uncharacterized protein
total genus 31
structure length 125
sequence length 143
ec nomenclature
pdb deposition date 2011-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3u0iA00
4R82A 4YBNA 5BNCA 1RZ1A 1USFA 1W3PA 3IN6A 3H96A 2RE7A 4HMVA 3R5RA 3AWHA 3SWJA 5CHEC 3ZOHA 5JABA 1G78A 3PFTA 2QEAA 3F7EA 4IRAA 1T9MA 5ESCA 2HQ7A 3ZOGA 2RDEA 1USCA 2PTFA 3U34A 3VY2A 4F07A 2AQ6A 2HQ9A 3ZOCA 2ECUA 1RFEA 1NRGA 1RZ0A 4QVBA 3DMBA 2A2JA 1G76A 3TGVA 2IG6A 1G79A 4HMWA 5CHOA 1DNLA 1G77A 3CB0A 3B5MA 1W9AA 3ZOFA 3FKHA 2OL5A 4Z85A 2VPAA 3GASA 2Q9KA 2X1JA 2I02A 3ZODA 3VY5A 2D37A 1XXOA 3ZOEA 1YOAA 2D36A 1I0RA 3BPKA 4HMTA 2R6VA 3A6QA 3BNKA 1XHNA 1WLIA 1TY9A 2HHZA 1Y30A 3FGEA 3NFWA 3KYGA 1CI0A 1WV4A 1EJEA 1I0SA 2GJGA 3HY8A 3R5PA 3R5LA 3U0IA 2IMLA 4HMUA 2HTDA 4XHYA 2ARZA 2X1KA 3A6RA 2HTIA 3K87A 2E83A 2ASFA 1FLMA 3K88A 3DNHA 4L82A 1WGBA 2ED4A 3E4VA 2ECRA 1JNWA 1VL7A 2IABA 2I51A 4HMSA 3A20A 4XJ2A 1AXJA 3BA3A 4HX6A 3K86A 1W3RA 3EC6A 2OU5A 2FHQA 1W3OA 4N7RC 1YLNA 3HMZA 2FG9A 1WLKA 4HMXA 2R0XA 3RH7A 3U35A 3CP3A 3R5YA 3AMFA 3KYFA 2D38A 1W3QA 3U5WA 2FURA 2QCKA 4Y9IA 4ZKYA 3R5WA 4YWNA 3DB0A 3VYAA 2D5MA 2NR4A 3R5ZA
chains in the Genus database with same CATH superfamily
4R82A 4YBNA 5BNCA 1RZ1A 1USFA 1W3PA 3IN6A 3H96A 2RE7A 4HMVA 3R5RA 3AWHA 3SWJA 5CHEC 3ZOHA 5JABA 1G78A 3PFTA 2QEAA 3F7EA 4IRAA 1T9MA 5ESCA 2HQ7A 3ZOGA 2RDEA 1USCA 2PTFA 3U34A 3VY2A 4F07A 2AQ6A 2HQ9A 3ZOCA 2ECUA 1RFEA 1NRGA 1RZ0A 4QVBA 3DMBA 2A2JA 1G76A 3TGVA 2IG6A 1G79A 4HMWA 5CHOA 1DNLA 1G77A 3CB0A 3B5MA 1W9AA 3ZOFA 3FKHA 2OL5A 4Z85A 2VPAA 3GASA 2Q9KA 2X1JA 2I02A 2K4QA 3ZODA 3VY5A 2D37A 1XXOA 3ZOEA 1YOAA 2D36A 4UHVA 1I0RA 3BPKA 4HMTA 2R6VA 3A6QA 3BNKA 1XHNA 1WLIA 1TY9A 2HHZA 1Y30A 3FGEA 3NFWA 3KYGA 1CI0A 1WV4A 1EJEA 2GUJA 3HE1A 1I0SA 2GJGA 3HY8A 3R5PA 3V4HA 3R5LA 3U0IA 2IMLA 4HMUA 2HTDA 4MTKA 4XHYA 2ARZA 2X1KA 3A6RA 2HTIA 3K87A 2E83A 2ASFA 1FLMA 3K88A 4W64A 3DNHA 4L82A 1WGBA 2ED4A 4HKHA 3E4VA 2ECRA 3EAAA 1JNWA 1VL7A 2IABA 2I51A 4HMSA 3A20A 4XJ2A 1AXJA 3BA3A 4HX6A 3K86A 1W3RA 3EC6A 2OU5A 2FHQA 1W3OA 4N7RC 2L1TA 1YLNA 3HMZA 2FG9A 2P5ZX 1WLKA 4HMXA 2R0XA 3RH7A 1Y12A 3CP3A 3U35A 3R5YA 3AMFA 3KYFA 2D38A 1W3QA 3U5WA 2FURA 2QCKA 4Y9IA 4ZKYA 3R5WA 4YWNA 3DB0A 3VYAA 2D5MA 4TV4A 2NR4A 3R5ZA
chains in the Genus database with same CATH topology
4R82A 4YBNA 5BNCA 1RZ1A 1USFA 1W3PA 3IN6A 3H96A 2RE7A 4HMVA 3R5RA 3AWHA 3SWJA 5CHEC 3ZOHA 5JABA 1G78A 3PFTA 2QEAA 3F7EA 4IRAA 1T9MA 5ESCA 2HQ7A 3ZOGA 2RDEA 1USCA 2PTFA 3U34A 3VY2A 4F07A 2AQ6A 2HQ9A 3ZOCA 2ECUA 1RFEA 1NRGA 1RZ0A 4QVBA 3DMBA 2A2JA 1G76A 3TGVA 2IG6A 1G79A 4HMWA 5CHOA 1DNLA 1G77A 3CB0A 3B5MA 1W9AA 3ZOFA 3FKHA 2OL5A 4Z85A 2VPAA 3GASA 2Q9KA 2X1JA 2I02A 3ZODA 3VY5A 2D37A 1XXOA 3ZOEA 1YOAA 2D36A 1I0RA 3BPKA 4HMTA 2R6VA 3A6QA 3BNKA 1XHNA 1WLIA 1TY9A 2HHZA 1Y30A 3FGEA 3NFWA 3KYGA 1CI0A 1WV4A 1EJEA 1I0SA 2GJGA 3HY8A 3R5PA 3R5LA 3U0IA 2IMLA 4HMUA 2HTDA 4XHYA 2ARZA 2X1KA 3A6RA 2HTIA 3K87A 2E83A 2ASFA 1FLMA 3K88A 3DNHA 4L82A 1WGBA 2ED4A 3E4VA 2ECRA 1JNWA 1VL7A 2IABA 2I51A 4HMSA 3A20A 4XJ2A 1AXJA 3BA3A 4HX6A 3K86A 1W3RA 3EC6A 2OU5A 2FHQA 1W3OA 4N7RC 1YLNA 3HMZA 2FG9A 1WLKA 4HMXA 2R0XA 3RH7A 3U35A 3CP3A 3R5YA 3AMFA 3KYFA 2D38A 1W3QA 3U5WA 2FURA 2QCKA 4Y9IA 4ZKYA 3R5WA 4YWNA 3DB0A 3VYAA 2D5MA 2NR4A 3R5ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R82 A;  4YBN A;  5BNC A;  1RZ1 A;  1USF A;  1W3P A;  3IN6 A;  3H96 A;  2RE7 A;  4HMV A;  3R5R A;  3AWH A;  3SWJ A;  5CHE C;  3ZOH A;  5JAB A;  1G78 A;  3PFT A;  2QEA A;  3F7E A;  4IRA A;  1T9M A;  5ESC A;  2HQ7 A;  3ZOG A;  2RDE A;  1USC A;  2PTF A;  3U34 A;  3VY2 A;  4F07 A;  2AQ6 A;  2HQ9 A;  3ZOC A;  2ECU A;  1RFE A;  1NRG A;  1RZ0 A;  4QVB A;  3DMB A;  2A2J A;  1G76 A;  3TGV A;  2IG6 A;  1G79 A;  4HMW A;  5CHO A;  1DNL A;  1G77 A;  3CB0 A;  3B5M A;  1W9A A;  3ZOF A;  3FKH A;  2OL5 A;  4Z85 A;  2VPA A;  3GAS A;  2Q9K A;  2X1J A;  2I02 A;  3ZOD A;  3VY5 A;  2D37 A;  1XXO A;  3ZOE A;  1YOA A;  2D36 A;  1I0R A;  3BPK A;  4HMT A;  2R6V A;  3A6Q A;  3BNK A;  1XHN A;  1WLI A;  1TY9 A;  2HHZ A;  1Y30 A;  3FGE A;  3NFW A;  3KYG A;  1CI0 A;  1WV4 A;  1EJE A;  1I0S A;  2GJG A;  3HY8 A;  3R5P A;  3R5L A;  3U0I A;  2IML A;  4HMU A;  2HTD A;  4XHY A;  2ARZ A;  2X1K A;  3A6R A;  2HTI A;  3K87 A;  2E83 A;  2ASF A;  1FLM A;  3K88 A;  3DNH A;  4L82 A;  1WGB A;  2ED4 A;  3E4V A;  2ECR A;  1JNW A;  1VL7 A;  2IAB A;  2I51 A;  4HMS A;  3A20 A;  4XJ2 A;  1AXJ A;  3BA3 A;  4HX6 A;  3K86 A;  1W3R A;  3EC6 A;  2OU5 A;  2FHQ A;  1W3O A;  4N7R C;  1YLN A;  3HMZ A;  2FG9 A;  1WLK A;  4HMX A;  2R0X A;  3RH7 A;  3U35 A;  3CP3 A;  3R5Y A;  3AMF A;  3KYF A;  2D38 A;  1W3Q A;  3U5W A;  2FUR A;  2QCK A;  4Y9I A;  4ZKY A;  3R5W A;  4YWN A;  3DB0 A;  3VYA A;  2D5M A;  2NR4 A;  3R5Z A; 
#chains in the Genus database with same CATH topology
 4R82 A;  4YBN A;  5BNC A;  1RZ1 A;  1USF A;  1W3P A;  3IN6 A;  3H96 A;  2RE7 A;  4HMV A;  3R5R A;  3AWH A;  3SWJ A;  5CHE C;  3ZOH A;  5JAB A;  1G78 A;  3PFT A;  2QEA A;  3F7E A;  4IRA A;  1T9M A;  5ESC A;  2HQ7 A;  3ZOG A;  2RDE A;  1USC A;  2PTF A;  3U34 A;  3VY2 A;  4F07 A;  2AQ6 A;  2HQ9 A;  3ZOC A;  2ECU A;  1RFE A;  1NRG A;  1RZ0 A;  4QVB A;  3DMB A;  2A2J A;  1G76 A;  3TGV A;  2IG6 A;  1G79 A;  4HMW A;  5CHO A;  1DNL A;  1G77 A;  3CB0 A;  3B5M A;  1W9A A;  3ZOF A;  3FKH A;  2OL5 A;  4Z85 A;  2VPA A;  3GAS A;  2Q9K A;  2X1J A;  2I02 A;  2K4Q A;  3ZOD A;  3VY5 A;  2D37 A;  1XXO A;  3ZOE A;  1YOA A;  2D36 A;  4UHV A;  1I0R A;  3BPK A;  4HMT A;  2R6V A;  3A6Q A;  3BNK A;  1XHN A;  1WLI A;  1TY9 A;  2HHZ A;  1Y30 A;  3FGE A;  3NFW A;  3KYG A;  1CI0 A;  1WV4 A;  1EJE A;  2GUJ A;  3HE1 A;  1I0S A;  2GJG A;  3HY8 A;  3R5P A;  3V4H A;  3R5L A;  3U0I A;  2IML A;  4HMU A;  2HTD A;  4MTK A;  4XHY A;  2ARZ A;  2X1K A;  3A6R A;  2HTI A;  3K87 A;  2E83 A;  2ASF A;  1FLM A;  3K88 A;  4W64 A;  3DNH A;  4L82 A;  1WGB A;  2ED4 A;  4HKH A;  3E4V A;  2ECR A;  3EAA A;  1JNW A;  1VL7 A;  2IAB A;  2I51 A;  4HMS A;  3A20 A;  4XJ2 A;  1AXJ A;  3BA3 A;  4HX6 A;  3K86 A;  1W3R A;  3EC6 A;  2OU5 A;  2FHQ A;  1W3O A;  4N7R C;  2L1T A;  1YLN A;  3HMZ A;  2FG9 A;  2P5Z X;  1WLK A;  4HMX A;  2R0X A;  3RH7 A;  1Y12 A;  3CP3 A;  3U35 A;  3R5Y A;  3AMF A;  3KYF A;  2D38 A;  1W3Q A;  3U5W A;  2FUR A;  2QCK A;  4Y9I A;  4ZKY A;  3R5W A;  4YWN A;  3DB0 A;  3VYA A;  2D5M A;  4TV4 A;  2NR4 A;  3R5Z A; 
#chains in the Genus database with same CATH homology
 4R82 A;  4YBN A;  5BNC A;  1RZ1 A;  1USF A;  1W3P A;  3IN6 A;  3H96 A;  2RE7 A;  4HMV A;  3R5R A;  3AWH A;  3SWJ A;  5CHE C;  3ZOH A;  5JAB A;  1G78 A;  3PFT A;  2QEA A;  3F7E A;  4IRA A;  1T9M A;  5ESC A;  2HQ7 A;  3ZOG A;  2RDE A;  1USC A;  2PTF A;  3U34 A;  3VY2 A;  4F07 A;  2AQ6 A;  2HQ9 A;  3ZOC A;  2ECU A;  1RFE A;  1NRG A;  1RZ0 A;  4QVB A;  3DMB A;  2A2J A;  1G76 A;  3TGV A;  2IG6 A;  1G79 A;  4HMW A;  5CHO A;  1DNL A;  1G77 A;  3CB0 A;  3B5M A;  1W9A A;  3ZOF A;  3FKH A;  2OL5 A;  4Z85 A;  2VPA A;  3GAS A;  2Q9K A;  2X1J A;  2I02 A;  3ZOD A;  3VY5 A;  2D37 A;  1XXO A;  3ZOE A;  1YOA A;  2D36 A;  1I0R A;  3BPK A;  4HMT A;  2R6V A;  3A6Q A;  3BNK A;  1XHN A;  1WLI A;  1TY9 A;  2HHZ A;  1Y30 A;  3FGE A;  3NFW A;  3KYG A;  1CI0 A;  1WV4 A;  1EJE A;  1I0S A;  2GJG A;  3HY8 A;  3R5P A;  3R5L A;  3U0I A;  2IML A;  4HMU A;  2HTD A;  4XHY A;  2ARZ A;  2X1K A;  3A6R A;  2HTI A;  3K87 A;  2E83 A;  2ASF A;  1FLM A;  3K88 A;  3DNH A;  4L82 A;  1WGB A;  2ED4 A;  3E4V A;  2ECR A;  1JNW A;  1VL7 A;  2IAB A;  2I51 A;  4HMS A;  3A20 A;  4XJ2 A;  1AXJ A;  3BA3 A;  4HX6 A;  3K86 A;  1W3R A;  3EC6 A;  2OU5 A;  2FHQ A;  1W3O A;  4N7R C;  1YLN A;  3HMZ A;  2FG9 A;  1WLK A;  4HMX A;  2R0X A;  3RH7 A;  3U35 A;  3CP3 A;  3R5Y A;  3AMF A;  3KYF A;  2D38 A;  1W3Q A;  3U5W A;  2FUR A;  2QCK A;  4Y9I A;  4ZKY A;  3R5W A;  4YWN A;  3DB0 A;  3VYA A;  2D5M A;  2NR4 A;  3R5Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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