3VY2A

N33d mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (39-42)AH2 (52-60)S1 (15-22)S2 (25-32)3H1 (33-35)S4 (43-48)S7 (109-120)AH3 (96-100)TIV3 (48-51)S5 (63-74)TI2 (75-78)TI3 (101-104)TVIII1 (102-105)TI4 (104-107)S3 (37-39)S6 (79-92)AH1 (4-11)Updating...
connected with : NaN
molecule tags Electron transport
source organism Desulfovibrio vulgaris
publication title Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule keywords FMN-binding protein
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vy2A00
3PFTA 2A2JA 2E83A 2QCKA 3KYGA 3HY8A 3DNHA 2OU5A 1W9AA 2GJGA 3VY2A 1W3QA 4IRAA 3ZODA 4YWNA 1YLNA 1XXOA 2ASFA 4HX6A 1RZ1A 1EJEA 3R5YA 1TY9A 2HQ7A 2IG6A 1Y30A 2D36A 1RFEA 3ZOEA 4Z85A 2RE7A 3NFWA 2FURA 1XHNA 3FKHA 1I0SA 2VPAA 3K88A 1W3RA 3AWHA 3R5PA 1WGBA 2I51A 5CHOA 3BPKA 4HMVA 2D38A 3U0IA 1G79A 4Y9IA 2RDEA 3RH7A 2FHQA 3U5WA 2HQ9A 2OL5A 1W3PA 1G78A 4HMWA 3DMBA 3SWJA 4QVBA 1T9MA 3ZOFA 4YBNA 4HMUA 4HMTA 2IMLA 3A6QA 3ZOGA 1DNLA 3R5RA 3ZOHA 3H96A 2Q9KA 4XJ2A 3IN6A 2HHZA 3R5LA 1I0RA 1NRGA 1WLKA 3VYAA 1CI0A 3FGEA 1WV4A 2ECRA 2IABA 5CHEC 5BNCA 1RZ0A 4F07A 2D37A 4HMSA 3U34A 1FLMA 4R82A 3CP3A 2D5MA 1VL7A 3VY5A 3E4VA 1WLIA 4HMXA 4L82A 2X1KA 3HMZA 2PTFA 3GASA 2R6VA 3BNKA 3A6RA 3ZOCA 1AXJA 3EC6A 2HTIA 1G76A 1USFA 3BA3A 2AQ6A 3F7EA 2ED4A 2X1JA 3DB0A 1G77A 2ECUA 1JNWA 3A20A 3CB0A 2NR4A 2FG9A 4N7RC 5JABA 1YOAA 3K86A 4ZKYA 2I02A 1USCA 2QEAA 2ARZA 4XHYA 3K87A 3R5WA 3U35A 2HTDA 3KYFA 3TGVA 2R0XA 3R5ZA 3AMFA 3B5MA 1W3OA 5ESCA
chains in the Genus database with same CATH superfamily
3PFTA 2A2JA 2E83A 3EAAA 2QCKA 3KYGA 3HY8A 3DNHA 2OU5A 1W9AA 2GJGA 3VY2A 1W3QA 4IRAA 3ZODA 4YWNA 1YLNA 1XXOA 2ASFA 4HX6A 1RZ1A 2L1TA 1EJEA 3R5YA 1TY9A 2HQ7A 2IG6A 1Y30A 2D36A 1RFEA 3HE1A 3ZOEA 4Z85A 2RE7A 3NFWA 2FURA 1XHNA 3FKHA 1I0SA 2VPAA 3K88A 1W3RA 2GUJA 3AWHA 3R5PA 1WGBA 2I51A 5CHOA 3BPKA 4TV4A 4HMVA 2D38A 3U0IA 1G79A 4Y9IA 2RDEA 3RH7A 2FHQA 3U5WA 2HQ9A 2OL5A 1W3PA 2K4QA 3V4HA 1G78A 4HMWA 3DMBA 3SWJA 4QVBA 1T9MA 3ZOFA 4YBNA 4HMUA 4HMTA 2IMLA 3A6QA 4W64A 3ZOGA 1DNLA 3R5RA 4UHVA 3ZOHA 3H96A 2Q9KA 4XJ2A 3IN6A 2HHZA 3R5LA 1I0RA 1NRGA 1WLKA 3VYAA 1CI0A 3FGEA 1WV4A 2ECRA 1Y12A 2IABA 5CHEC 5BNCA 1RZ0A 4F07A 2D37A 4HMSA 4MTKA 3U34A 1FLMA 4R82A 3CP3A 2D5MA 1VL7A 3VY5A 3E4VA 1WLIA 4HMXA 4L82A 2X1KA 3HMZA 2PTFA 3GASA 2R6VA 3BNKA 3A6RA 3ZOCA 1AXJA 3EC6A 4HKHA 2HTIA 1G76A 1USFA 3BA3A 2AQ6A 3F7EA 2ED4A 2X1JA 3DB0A 1G77A 2ECUA 1JNWA 3A20A 3CB0A 2NR4A 2FG9A 4N7RC 5JABA 1YOAA 3K86A 4ZKYA 2P5ZX 2I02A 1USCA 2QEAA 2ARZA 4XHYA 3K87A 3R5WA 3U35A 2HTDA 3KYFA 3TGVA 2R0XA 3R5ZA 3AMFA 3B5MA 1W3OA 5ESCA
chains in the Genus database with same CATH topology
3PFTA 2A2JA 2E83A 2QCKA 3KYGA 3HY8A 3DNHA 2OU5A 1W9AA 2GJGA 3VY2A 1W3QA 4IRAA 3ZODA 4YWNA 1YLNA 1XXOA 2ASFA 4HX6A 1RZ1A 1EJEA 3R5YA 1TY9A 2HQ7A 2IG6A 1Y30A 2D36A 1RFEA 3ZOEA 4Z85A 2RE7A 3NFWA 2FURA 1XHNA 3FKHA 1I0SA 2VPAA 3K88A 1W3RA 3AWHA 3R5PA 1WGBA 2I51A 5CHOA 3BPKA 4HMVA 2D38A 3U0IA 1G79A 4Y9IA 2RDEA 3RH7A 2FHQA 3U5WA 2HQ9A 2OL5A 1W3PA 1G78A 4HMWA 3DMBA 3SWJA 4QVBA 1T9MA 3ZOFA 4YBNA 4HMUA 4HMTA 2IMLA 3A6QA 3ZOGA 1DNLA 3R5RA 3ZOHA 3H96A 2Q9KA 4XJ2A 3IN6A 2HHZA 3R5LA 1I0RA 1NRGA 1WLKA 3VYAA 1CI0A 3FGEA 1WV4A 2ECRA 2IABA 5CHEC 5BNCA 1RZ0A 4F07A 2D37A 4HMSA 3U34A 1FLMA 4R82A 3CP3A 2D5MA 1VL7A 3VY5A 3E4VA 1WLIA 4HMXA 4L82A 2X1KA 3HMZA 2PTFA 3GASA 2R6VA 3BNKA 3A6RA 3ZOCA 1AXJA 3EC6A 2HTIA 1G76A 1USFA 3BA3A 2AQ6A 3F7EA 2ED4A 2X1JA 3DB0A 1G77A 2ECUA 1JNWA 3A20A 3CB0A 2NR4A 2FG9A 4N7RC 5JABA 1YOAA 3K86A 4ZKYA 2I02A 1USCA 2QEAA 2ARZA 4XHYA 3K87A 3R5WA 3U35A 2HTDA 3KYFA 3TGVA 2R0XA 3R5ZA 3AMFA 3B5MA 1W3OA 5ESCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PFT A;  2A2J A;  2E83 A;  2QCK A;  3KYG A;  3HY8 A;  3DNH A;  2OU5 A;  1W9A A;  2GJG A;  3VY2 A;  1W3Q A;  4IRA A;  3ZOD A;  4YWN A;  1YLN A;  1XXO A;  2ASF A;  4HX6 A;  1RZ1 A;  1EJE A;  3R5Y A;  1TY9 A;  2HQ7 A;  2IG6 A;  1Y30 A;  2D36 A;  1RFE A;  3ZOE A;  4Z85 A;  2RE7 A;  3NFW A;  2FUR A;  1XHN A;  3FKH A;  1I0S A;  2VPA A;  3K88 A;  1W3R A;  3AWH A;  3R5P A;  1WGB A;  2I51 A;  5CHO A;  3BPK A;  4HMV A;  2D38 A;  3U0I A;  1G79 A;  4Y9I A;  2RDE A;  3RH7 A;  2FHQ A;  3U5W A;  2HQ9 A;  2OL5 A;  1W3P A;  1G78 A;  4HMW A;  3DMB A;  3SWJ A;  4QVB A;  1T9M A;  3ZOF A;  4YBN A;  4HMU A;  4HMT A;  2IML A;  3A6Q A;  3ZOG A;  1DNL A;  3R5R A;  3ZOH A;  3H96 A;  2Q9K A;  4XJ2 A;  3IN6 A;  2HHZ A;  3R5L A;  1I0R A;  1NRG A;  1WLK A;  3VYA A;  1CI0 A;  3FGE A;  1WV4 A;  2ECR A;  2IAB A;  5CHE C;  5BNC A;  1RZ0 A;  4F07 A;  2D37 A;  4HMS A;  3U34 A;  1FLM A;  4R82 A;  3CP3 A;  2D5M A;  1VL7 A;  3VY5 A;  3E4V A;  1WLI A;  4HMX A;  4L82 A;  2X1K A;  3HMZ A;  2PTF A;  3GAS A;  2R6V A;  3BNK A;  3A6R A;  3ZOC A;  1AXJ A;  3EC6 A;  2HTI A;  1G76 A;  1USF A;  3BA3 A;  2AQ6 A;  3F7E A;  2ED4 A;  2X1J A;  3DB0 A;  1G77 A;  2ECU A;  1JNW A;  3A20 A;  3CB0 A;  2NR4 A;  2FG9 A;  4N7R C;  5JAB A;  1YOA A;  3K86 A;  4ZKY A;  2I02 A;  1USC A;  2QEA A;  2ARZ A;  4XHY A;  3K87 A;  3R5W A;  3U35 A;  2HTD A;  3KYF A;  3TGV A;  2R0X A;  3R5Z A;  3AMF A;  3B5M A;  1W3O A;  5ESC A; 
#chains in the Genus database with same CATH topology
 3PFT A;  2A2J A;  2E83 A;  3EAA A;  2QCK A;  3KYG A;  3HY8 A;  3DNH A;  2OU5 A;  1W9A A;  2GJG A;  3VY2 A;  1W3Q A;  4IRA A;  3ZOD A;  4YWN A;  1YLN A;  1XXO A;  2ASF A;  4HX6 A;  1RZ1 A;  2L1T A;  1EJE A;  3R5Y A;  1TY9 A;  2HQ7 A;  2IG6 A;  1Y30 A;  2D36 A;  1RFE A;  3HE1 A;  3ZOE A;  4Z85 A;  2RE7 A;  3NFW A;  2FUR A;  1XHN A;  3FKH A;  1I0S A;  2VPA A;  3K88 A;  1W3R A;  2GUJ A;  3AWH A;  3R5P A;  1WGB A;  2I51 A;  5CHO A;  3BPK A;  4TV4 A;  4HMV A;  2D38 A;  3U0I A;  1G79 A;  4Y9I A;  2RDE A;  3RH7 A;  2FHQ A;  3U5W A;  2HQ9 A;  2OL5 A;  1W3P A;  2K4Q A;  3V4H A;  1G78 A;  4HMW A;  3DMB A;  3SWJ A;  4QVB A;  1T9M A;  3ZOF A;  4YBN A;  4HMU A;  4HMT A;  2IML A;  3A6Q A;  4W64 A;  3ZOG A;  1DNL A;  3R5R A;  4UHV A;  3ZOH A;  3H96 A;  2Q9K A;  4XJ2 A;  3IN6 A;  2HHZ A;  3R5L A;  1I0R A;  1NRG A;  1WLK A;  3VYA A;  1CI0 A;  3FGE A;  1WV4 A;  2ECR A;  1Y12 A;  2IAB A;  5CHE C;  5BNC A;  1RZ0 A;  4F07 A;  2D37 A;  4HMS A;  4MTK A;  3U34 A;  1FLM A;  4R82 A;  3CP3 A;  2D5M A;  1VL7 A;  3VY5 A;  3E4V A;  1WLI A;  4HMX A;  4L82 A;  2X1K A;  3HMZ A;  2PTF A;  3GAS A;  2R6V A;  3BNK A;  3A6R A;  3ZOC A;  1AXJ A;  3EC6 A;  4HKH A;  2HTI A;  1G76 A;  1USF A;  3BA3 A;  2AQ6 A;  3F7E A;  2ED4 A;  2X1J A;  3DB0 A;  1G77 A;  2ECU A;  1JNW A;  3A20 A;  3CB0 A;  2NR4 A;  2FG9 A;  4N7R C;  5JAB A;  1YOA A;  3K86 A;  4ZKY A;  2P5Z X;  2I02 A;  1USC A;  2QEA A;  2ARZ A;  4XHY A;  3K87 A;  3R5W A;  3U35 A;  2HTD A;  3KYF A;  3TGV A;  2R0X A;  3R5Z A;  3AMF A;  3B5M A;  1W3O A;  5ESC A; 
#chains in the Genus database with same CATH homology
 3PFT A;  2A2J A;  2E83 A;  2QCK A;  3KYG A;  3HY8 A;  3DNH A;  2OU5 A;  1W9A A;  2GJG A;  3VY2 A;  1W3Q A;  4IRA A;  3ZOD A;  4YWN A;  1YLN A;  1XXO A;  2ASF A;  4HX6 A;  1RZ1 A;  1EJE A;  3R5Y A;  1TY9 A;  2HQ7 A;  2IG6 A;  1Y30 A;  2D36 A;  1RFE A;  3ZOE A;  4Z85 A;  2RE7 A;  3NFW A;  2FUR A;  1XHN A;  3FKH A;  1I0S A;  2VPA A;  3K88 A;  1W3R A;  3AWH A;  3R5P A;  1WGB A;  2I51 A;  5CHO A;  3BPK A;  4HMV A;  2D38 A;  3U0I A;  1G79 A;  4Y9I A;  2RDE A;  3RH7 A;  2FHQ A;  3U5W A;  2HQ9 A;  2OL5 A;  1W3P A;  1G78 A;  4HMW A;  3DMB A;  3SWJ A;  4QVB A;  1T9M A;  3ZOF A;  4YBN A;  4HMU A;  4HMT A;  2IML A;  3A6Q A;  3ZOG A;  1DNL A;  3R5R A;  3ZOH A;  3H96 A;  2Q9K A;  4XJ2 A;  3IN6 A;  2HHZ A;  3R5L A;  1I0R A;  1NRG A;  1WLK A;  3VYA A;  1CI0 A;  3FGE A;  1WV4 A;  2ECR A;  2IAB A;  5CHE C;  5BNC A;  1RZ0 A;  4F07 A;  2D37 A;  4HMS A;  3U34 A;  1FLM A;  4R82 A;  3CP3 A;  2D5M A;  1VL7 A;  3VY5 A;  3E4V A;  1WLI A;  4HMX A;  4L82 A;  2X1K A;  3HMZ A;  2PTF A;  3GAS A;  2R6V A;  3BNK A;  3A6R A;  3ZOC A;  1AXJ A;  3EC6 A;  2HTI A;  1G76 A;  1USF A;  3BA3 A;  2AQ6 A;  3F7E A;  2ED4 A;  2X1J A;  3DB0 A;  1G77 A;  2ECU A;  1JNW A;  3A20 A;  3CB0 A;  2NR4 A;  2FG9 A;  4N7R C;  5JAB A;  1YOA A;  3K86 A;  4ZKY A;  2I02 A;  1USC A;  2QEA A;  2ARZ A;  4XHY A;  3K87 A;  3R5W A;  3U35 A;  2HTD A;  3KYF A;  3TGV A;  2R0X A;  3R5Z A;  3AMF A;  3B5M A;  1W3O A;  5ESC A; 
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