3VY2A

N33d mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (39-42)AH2 (52-60)S1 (15-22)S2 (25-32)3H1 (33-35)S4 (43-48)S7 (109-120)AH3 (96-100)TIV3 (48-51)S5 (63-74)TI2 (75-78)TI3 (101-104)TVIII1 (102-105)TI4 (104-107)S3 (37-39)S6 (79-92)AH1 (4-11)Updating...
connected with : NaN
molecule tags Electron transport
source organism Desulfovibrio vulgaris
publication title Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule keywords FMN-binding protein
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vy2A00
4L82A 2QCKA 2HQ7A 1YLNA 3PFTA 1VL7A 3R5LA 2Q9KA 1G77A 3DB0A 3E4VA 3H96A 1DNLA 1XXOA 4YWNA 1JNWA 1RZ1A 2OL5A 3CB0A 2OU5A 3GASA 1WLIA 2HTIA 1T9MA 2X1KA 4XHYA 1W3QA 3KYFA 3ZOEA 2FG9A 1EJEA 3R5YA 1W3RA 4HMTA 1W3OA 1USCA 3IN6A 5CHOA 3SWJA 3U35A 2ARZA 3A6RA 3DNHA 3FGEA 2X1JA 3NFWA 3U0IA 2ASFA 2ECUA 1XHNA 2R6VA 3FKHA 1WLKA 3U5WA 3VY2A 4HMSA 1W9AA 1I0RA 3U34A 3ZOFA 1AXJA 2R0XA 2D38A 1RFEA 3R5ZA 2D36A 1NRGA 2D37A 2RDEA 2VPAA 3K88A 4HMUA 4ZKYA 2D5MA 4YBNA 5JABA 4HMXA 4HMWA 3VYAA 1Y30A 1FLMA 5ESCA 3R5WA 4Y9IA 3B5MA 3AMFA 1G79A 3CP3A 3ZOHA 2HTDA 4XJ2A 1RZ0A 1USFA 2E83A 2I51A 2NR4A 2FHQA 4HMVA 3KYGA 4N7RC 2ECRA 3ZOGA 2IMLA 3ZOCA 2AQ6A 1WV4A 4QVBA 1G76A 1I0SA 2A2JA 3AWHA 4IRAA 1CI0A 3BPKA 2IG6A 1G78A 2IABA 2HQ9A 1YOAA 3A6QA 2FURA 3HMZA 3HY8A 3K87A 3R5RA 5BNCA 1W3PA 2QEAA 3BNKA 3VY5A 1WGBA 2RE7A 3EC6A 3R5PA 2GJGA 4F07A 4Z85A 3BA3A 2ED4A 3TGVA 5CHEC 3ZODA 3F7EA 2HHZA 2PTFA 3DMBA 1TY9A 2I02A 4HX6A 4R82A 3RH7A 3K86A 3A20A
chains in the Genus database with same CATH superfamily
4L82A 2QCKA 2HQ7A 1YLNA 3PFTA 1VL7A 3R5LA 2Q9KA 2K4QA 1G77A 3DB0A 3E4VA 3H96A 1DNLA 1XXOA 3V4HA 4YWNA 1JNWA 1RZ1A 2OL5A 3CB0A 2OU5A 2P5ZX 3GASA 1WLIA 2HTIA 1T9MA 2X1KA 4XHYA 1W3QA 3KYFA 3ZOEA 2FG9A 1EJEA 3R5YA 1W3RA 4HMTA 1W3OA 1USCA 3IN6A 5CHOA 3SWJA 2GUJA 3U35A 2ARZA 3A6RA 3DNHA 3FGEA 2X1JA 3NFWA 3U0IA 2L1TA 2ASFA 2ECUA 4MTKA 1XHNA 4TV4A 2R6VA 3FKHA 1WLKA 3U5WA 3VY2A 4HMSA 1W9AA 1I0RA 3U34A 3ZOFA 1AXJA 2R0XA 2D38A 1RFEA 3R5ZA 2D36A 1NRGA 2D37A 2RDEA 2VPAA 3K88A 4HMUA 4ZKYA 2D5MA 4YBNA 5JABA 4HMXA 4HMWA 3VYAA 1Y30A 1FLMA 5ESCA 3R5WA 4Y9IA 3B5MA 3AMFA 1G79A 3CP3A 3ZOHA 2HTDA 4XJ2A 1RZ0A 1USFA 2E83A 2I51A 2NR4A 2FHQA 3HE1A 4HMVA 3KYGA 4N7RC 2ECRA 3ZOGA 2IMLA 3ZOCA 2AQ6A 1WV4A 4QVBA 1G76A 1I0SA 2A2JA 3EAAA 3AWHA 4IRAA 4HKHA 1CI0A 3BPKA 2IG6A 1G78A 2IABA 2HQ9A 4W64A 1YOAA 3A6QA 2FURA 3HMZA 3HY8A 3K87A 3R5RA 5BNCA 1W3PA 2QEAA 3BNKA 3VY5A 1WGBA 2RE7A 3EC6A 3R5PA 2GJGA 4F07A 4Z85A 3BA3A 4UHVA 2ED4A 3TGVA 5CHEC 3ZODA 3F7EA 2HHZA 2PTFA 3DMBA 1TY9A 2I02A 4HX6A 4R82A 1Y12A 3RH7A 3K86A 3A20A
chains in the Genus database with same CATH topology
4L82A 2QCKA 2HQ7A 1YLNA 3PFTA 1VL7A 3R5LA 2Q9KA 1G77A 3DB0A 3E4VA 3H96A 1DNLA 1XXOA 4YWNA 1JNWA 1RZ1A 2OL5A 3CB0A 2OU5A 3GASA 1WLIA 2HTIA 1T9MA 2X1KA 4XHYA 1W3QA 3KYFA 3ZOEA 2FG9A 1EJEA 3R5YA 1W3RA 4HMTA 1W3OA 1USCA 3IN6A 5CHOA 3SWJA 3U35A 2ARZA 3A6RA 3DNHA 3FGEA 2X1JA 3NFWA 3U0IA 2ASFA 2ECUA 1XHNA 2R6VA 3FKHA 1WLKA 3U5WA 3VY2A 4HMSA 1W9AA 1I0RA 3U34A 3ZOFA 1AXJA 2R0XA 2D38A 1RFEA 3R5ZA 2D36A 1NRGA 2D37A 2RDEA 2VPAA 3K88A 4HMUA 4ZKYA 2D5MA 4YBNA 5JABA 4HMXA 4HMWA 3VYAA 1Y30A 1FLMA 5ESCA 3R5WA 4Y9IA 3B5MA 3AMFA 1G79A 3CP3A 3ZOHA 2HTDA 4XJ2A 1RZ0A 1USFA 2E83A 2I51A 2NR4A 2FHQA 4HMVA 3KYGA 4N7RC 2ECRA 3ZOGA 2IMLA 3ZOCA 2AQ6A 1WV4A 4QVBA 1G76A 1I0SA 2A2JA 3AWHA 4IRAA 1CI0A 3BPKA 2IG6A 1G78A 2IABA 2HQ9A 1YOAA 3A6QA 2FURA 3HMZA 3HY8A 3K87A 3R5RA 5BNCA 1W3PA 2QEAA 3BNKA 3VY5A 1WGBA 2RE7A 3EC6A 3R5PA 2GJGA 4F07A 4Z85A 3BA3A 2ED4A 3TGVA 5CHEC 3ZODA 3F7EA 2HHZA 2PTFA 3DMBA 1TY9A 2I02A 4HX6A 4R82A 3RH7A 3K86A 3A20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L82 A;  2QCK A;  2HQ7 A;  1YLN A;  3PFT A;  1VL7 A;  3R5L A;  2Q9K A;  1G77 A;  3DB0 A;  3E4V A;  3H96 A;  1DNL A;  1XXO A;  4YWN A;  1JNW A;  1RZ1 A;  2OL5 A;  3CB0 A;  2OU5 A;  3GAS A;  1WLI A;  2HTI A;  1T9M A;  2X1K A;  4XHY A;  1W3Q A;  3KYF A;  3ZOE A;  2FG9 A;  1EJE A;  3R5Y A;  1W3R A;  4HMT A;  1W3O A;  1USC A;  3IN6 A;  5CHO A;  3SWJ A;  3U35 A;  2ARZ A;  3A6R A;  3DNH A;  3FGE A;  2X1J A;  3NFW A;  3U0I A;  2ASF A;  2ECU A;  1XHN A;  2R6V A;  3FKH A;  1WLK A;  3U5W A;  3VY2 A;  4HMS A;  1W9A A;  1I0R A;  3U34 A;  3ZOF A;  1AXJ A;  2R0X A;  2D38 A;  1RFE A;  3R5Z A;  2D36 A;  1NRG A;  2D37 A;  2RDE A;  2VPA A;  3K88 A;  4HMU A;  4ZKY A;  2D5M A;  4YBN A;  5JAB A;  4HMX A;  4HMW A;  3VYA A;  1Y30 A;  1FLM A;  5ESC A;  3R5W A;  4Y9I A;  3B5M A;  3AMF A;  1G79 A;  3CP3 A;  3ZOH A;  2HTD A;  4XJ2 A;  1RZ0 A;  1USF A;  2E83 A;  2I51 A;  2NR4 A;  2FHQ A;  4HMV A;  3KYG A;  4N7R C;  2ECR A;  3ZOG A;  2IML A;  3ZOC A;  2AQ6 A;  1WV4 A;  4QVB A;  1G76 A;  1I0S A;  2A2J A;  3AWH A;  4IRA A;  1CI0 A;  3BPK A;  2IG6 A;  1G78 A;  2IAB A;  2HQ9 A;  1YOA A;  3A6Q A;  2FUR A;  3HMZ A;  3HY8 A;  3K87 A;  3R5R A;  5BNC A;  1W3P A;  2QEA A;  3BNK A;  3VY5 A;  1WGB A;  2RE7 A;  3EC6 A;  3R5P A;  2GJG A;  4F07 A;  4Z85 A;  3BA3 A;  2ED4 A;  3TGV A;  5CHE C;  3ZOD A;  3F7E A;  2HHZ A;  2PTF A;  3DMB A;  1TY9 A;  2I02 A;  4HX6 A;  4R82 A;  3RH7 A;  3K86 A;  3A20 A; 
#chains in the Genus database with same CATH topology
 4L82 A;  2QCK A;  2HQ7 A;  1YLN A;  3PFT A;  1VL7 A;  3R5L A;  2Q9K A;  2K4Q A;  1G77 A;  3DB0 A;  3E4V A;  3H96 A;  1DNL A;  1XXO A;  3V4H A;  4YWN A;  1JNW A;  1RZ1 A;  2OL5 A;  3CB0 A;  2OU5 A;  2P5Z X;  3GAS A;  1WLI A;  2HTI A;  1T9M A;  2X1K A;  4XHY A;  1W3Q A;  3KYF A;  3ZOE A;  2FG9 A;  1EJE A;  3R5Y A;  1W3R A;  4HMT A;  1W3O A;  1USC A;  3IN6 A;  5CHO A;  3SWJ A;  2GUJ A;  3U35 A;  2ARZ A;  3A6R A;  3DNH A;  3FGE A;  2X1J A;  3NFW A;  3U0I A;  2L1T A;  2ASF A;  2ECU A;  4MTK A;  1XHN A;  4TV4 A;  2R6V A;  3FKH A;  1WLK A;  3U5W A;  3VY2 A;  4HMS A;  1W9A A;  1I0R A;  3U34 A;  3ZOF A;  1AXJ A;  2R0X A;  2D38 A;  1RFE A;  3R5Z A;  2D36 A;  1NRG A;  2D37 A;  2RDE A;  2VPA A;  3K88 A;  4HMU A;  4ZKY A;  2D5M A;  4YBN A;  5JAB A;  4HMX A;  4HMW A;  3VYA A;  1Y30 A;  1FLM A;  5ESC A;  3R5W A;  4Y9I A;  3B5M A;  3AMF A;  1G79 A;  3CP3 A;  3ZOH A;  2HTD A;  4XJ2 A;  1RZ0 A;  1USF A;  2E83 A;  2I51 A;  2NR4 A;  2FHQ A;  3HE1 A;  4HMV A;  3KYG A;  4N7R C;  2ECR A;  3ZOG A;  2IML A;  3ZOC A;  2AQ6 A;  1WV4 A;  4QVB A;  1G76 A;  1I0S A;  2A2J A;  3EAA A;  3AWH A;  4IRA A;  4HKH A;  1CI0 A;  3BPK A;  2IG6 A;  1G78 A;  2IAB A;  2HQ9 A;  4W64 A;  1YOA A;  3A6Q A;  2FUR A;  3HMZ A;  3HY8 A;  3K87 A;  3R5R A;  5BNC A;  1W3P A;  2QEA A;  3BNK A;  3VY5 A;  1WGB A;  2RE7 A;  3EC6 A;  3R5P A;  2GJG A;  4F07 A;  4Z85 A;  3BA3 A;  4UHV A;  2ED4 A;  3TGV A;  5CHE C;  3ZOD A;  3F7E A;  2HHZ A;  2PTF A;  3DMB A;  1TY9 A;  2I02 A;  4HX6 A;  4R82 A;  1Y12 A;  3RH7 A;  3K86 A;  3A20 A; 
#chains in the Genus database with same CATH homology
 4L82 A;  2QCK A;  2HQ7 A;  1YLN A;  3PFT A;  1VL7 A;  3R5L A;  2Q9K A;  1G77 A;  3DB0 A;  3E4V A;  3H96 A;  1DNL A;  1XXO A;  4YWN A;  1JNW A;  1RZ1 A;  2OL5 A;  3CB0 A;  2OU5 A;  3GAS A;  1WLI A;  2HTI A;  1T9M A;  2X1K A;  4XHY A;  1W3Q A;  3KYF A;  3ZOE A;  2FG9 A;  1EJE A;  3R5Y A;  1W3R A;  4HMT A;  1W3O A;  1USC A;  3IN6 A;  5CHO A;  3SWJ A;  3U35 A;  2ARZ A;  3A6R A;  3DNH A;  3FGE A;  2X1J A;  3NFW A;  3U0I A;  2ASF A;  2ECU A;  1XHN A;  2R6V A;  3FKH A;  1WLK A;  3U5W A;  3VY2 A;  4HMS A;  1W9A A;  1I0R A;  3U34 A;  3ZOF A;  1AXJ A;  2R0X A;  2D38 A;  1RFE A;  3R5Z A;  2D36 A;  1NRG A;  2D37 A;  2RDE A;  2VPA A;  3K88 A;  4HMU A;  4ZKY A;  2D5M A;  4YBN A;  5JAB A;  4HMX A;  4HMW A;  3VYA A;  1Y30 A;  1FLM A;  5ESC A;  3R5W A;  4Y9I A;  3B5M A;  3AMF A;  1G79 A;  3CP3 A;  3ZOH A;  2HTD A;  4XJ2 A;  1RZ0 A;  1USF A;  2E83 A;  2I51 A;  2NR4 A;  2FHQ A;  4HMV A;  3KYG A;  4N7R C;  2ECR A;  3ZOG A;  2IML A;  3ZOC A;  2AQ6 A;  1WV4 A;  4QVB A;  1G76 A;  1I0S A;  2A2J A;  3AWH A;  4IRA A;  1CI0 A;  3BPK A;  2IG6 A;  1G78 A;  2IAB A;  2HQ9 A;  1YOA A;  3A6Q A;  2FUR A;  3HMZ A;  3HY8 A;  3K87 A;  3R5R A;  5BNC A;  1W3P A;  2QEA A;  3BNK A;  3VY5 A;  1WGB A;  2RE7 A;  3EC6 A;  3R5P A;  2GJG A;  4F07 A;  4Z85 A;  3BA3 A;  2ED4 A;  3TGV A;  5CHE C;  3ZOD A;  3F7E A;  2HHZ A;  2PTF A;  3DMB A;  1TY9 A;  2I02 A;  4HX6 A;  4R82 A;  3RH7 A;  3K86 A;  3A20 A; 
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