3VY2A

N33d mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (39-42)AH2 (52-60)S1 (15-22)S2 (25-32)3H1 (33-35)S4 (43-48)S7 (109-120)AH3 (96-100)TIV3 (48-51)S5 (63-74)TI2 (75-78)TI3 (101-104)TVIII1 (102-105)TI4 (104-107)S3 (37-39)S6 (79-92)AH1 (4-11)Updating...
connected with : NaN
molecule tags Electron transport
source organism Desulfovibrio vulgaris
publication title Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule keywords FMN-binding protein
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vy2A00
4Z85A 2ASFA 3IN6A 3DB0A 2I51A 1I0SA 2HQ7A 2QCKA 2PTFA 2IG6A 1YOAA 3BPKA 2ECUA 3B5MA 4XHYA 3BA3A 2NR4A 2D5MA 3CB0A 3R5WA 1DNLA 1W9AA 3DNHA 3HY8A 3R5ZA 2HTDA 1W3RA 2ARZA 2D37A 3ZOFA 4IRAA 4HMWA 3SWJA 1W3QA 3NFWA 2HTIA 3AMFA 4R82A 4Y9IA 3ZOHA 1EJEA 3EC6A 3VYAA 4ZKYA 3K88A 2GJGA 1NRGA 3KYFA 1RZ0A 3K86A 3R5PA 1USFA 3BNKA 2IABA 1WGBA 4YBNA 1WV4A 2D38A 2I02A 4F07A 3FGEA 2Q9KA 3R5LA 2D36A 5CHOA 5CHEC 4QVBA 3VY5A 1FLMA 4XJ2A 3A6RA 2HHZA 2RE7A 4HMXA 1RZ1A 1G79A 2HQ9A 2IMLA 3ZOGA 2ECRA 3CP3A 3R5YA 1VL7A 3GASA 2AQ6A 2A2JA 2X1JA 1USCA 3PFTA 1JNWA 2RDEA 1AXJA 1Y30A 3R5RA 2ED4A 1W3OA 3A6QA 1RFEA 1XXOA 3FKHA 3U34A 1TY9A 4HX6A 3H96A 3KYGA 3TGVA 1T9MA 4HMSA 2FURA 1XHNA 2FHQA 3E4VA 3HMZA 4HMVA 3A20A 3ZOEA 3U0IA 3AWHA 2QEAA 4HMUA 1I0RA 3VY2A 2OL5A 1CI0A 1WLKA 3ZOCA 3ZODA 5BNCA 1G78A 2VPAA 2OU5A 2R0XA 1YLNA 5ESCA 4HMTA 2E83A 1WLIA 1W3PA 3K87A 2X1KA 4L82A 3U35A 3U5WA 2FG9A 2R6VA 3DMBA 4YWNA 3RH7A 5JABA 1G77A 1G76A 4N7RC 3F7EA
chains in the Genus database with same CATH superfamily
4Z85A 2ASFA 3IN6A 3DB0A 2I51A 1I0SA 2HQ7A 2QCKA 1Y12A 2PTFA 2IG6A 1YOAA 4W64A 3BPKA 2ECUA 2L1TA 3B5MA 4HKHA 3BA3A 2NR4A 4XHYA 2D5MA 3CB0A 3R5WA 1DNLA 1W9AA 3DNHA 3HY8A 3R5ZA 2HTDA 4UHVA 1W3RA 2ARZA 2D37A 3ZOFA 4IRAA 4HMWA 3SWJA 2GUJA 1W3QA 3NFWA 2K4QA 2HTIA 3AMFA 4R82A 4Y9IA 4MTKA 3ZOHA 1EJEA 3EC6A 3VYAA 4ZKYA 3K88A 2GJGA 1NRGA 3KYFA 1RZ0A 3K86A 3R5PA 1USFA 3BNKA 2IABA 1WGBA 4YBNA 1WV4A 2D38A 2I02A 4F07A 3FGEA 2Q9KA 3R5LA 2D36A 5CHOA 5CHEC 4QVBA 3VY5A 1FLMA 4XJ2A 3A6RA 2HHZA 2RE7A 4HMXA 1RZ1A 1G79A 2HQ9A 2IMLA 2P5ZX 3ZOGA 2ECRA 3CP3A 3R5YA 1VL7A 3GASA 2AQ6A 2A2JA 2X1JA 4TV4A 1USCA 3PFTA 1JNWA 2RDEA 1AXJA 1Y30A 3R5RA 2ED4A 1W3OA 3A6QA 1RFEA 1XXOA 3FKHA 3U34A 1TY9A 3HE1A 4HX6A 3H96A 3KYGA 3TGVA 1T9MA 4HMSA 2FURA 1XHNA 2FHQA 3E4VA 3HMZA 4HMVA 3A20A 3ZOEA 3U0IA 3AWHA 2QEAA 4HMUA 1I0RA 3EAAA 3VY2A 2OL5A 1CI0A 1WLKA 3ZOCA 3ZODA 5BNCA 1G78A 2VPAA 2OU5A 2R0XA 1YLNA 5ESCA 4HMTA 2E83A 1WLIA 1W3PA 3K87A 2X1KA 4L82A 3U35A 3U5WA 2FG9A 2R6VA 3DMBA 4YWNA 3RH7A 5JABA 1G77A 1G76A 4N7RC 3F7EA 3V4HA
chains in the Genus database with same CATH topology
4Z85A 2ASFA 3IN6A 3DB0A 2I51A 1I0SA 2HQ7A 2QCKA 2PTFA 2IG6A 1YOAA 3BPKA 2ECUA 3B5MA 4XHYA 3BA3A 2NR4A 2D5MA 3CB0A 3R5WA 1DNLA 1W9AA 3DNHA 3HY8A 3R5ZA 2HTDA 1W3RA 2ARZA 2D37A 3ZOFA 4IRAA 4HMWA 3SWJA 1W3QA 3NFWA 2HTIA 3AMFA 4R82A 4Y9IA 3ZOHA 1EJEA 3EC6A 3VYAA 4ZKYA 3K88A 2GJGA 1NRGA 3KYFA 1RZ0A 3K86A 3R5PA 1USFA 3BNKA 2IABA 1WGBA 4YBNA 1WV4A 2D38A 2I02A 4F07A 3FGEA 2Q9KA 3R5LA 2D36A 5CHOA 5CHEC 4QVBA 3VY5A 1FLMA 4XJ2A 3A6RA 2HHZA 2RE7A 4HMXA 1RZ1A 1G79A 2HQ9A 2IMLA 3ZOGA 2ECRA 3CP3A 3R5YA 1VL7A 3GASA 2AQ6A 2A2JA 2X1JA 1USCA 3PFTA 1JNWA 2RDEA 1AXJA 1Y30A 3R5RA 2ED4A 1W3OA 3A6QA 1RFEA 1XXOA 3FKHA 3U34A 1TY9A 4HX6A 3H96A 3KYGA 3TGVA 1T9MA 4HMSA 2FURA 1XHNA 2FHQA 3E4VA 3HMZA 4HMVA 3A20A 3ZOEA 3U0IA 3AWHA 2QEAA 4HMUA 1I0RA 3VY2A 2OL5A 1CI0A 1WLKA 3ZOCA 3ZODA 5BNCA 1G78A 2VPAA 2OU5A 2R0XA 1YLNA 5ESCA 4HMTA 2E83A 1WLIA 1W3PA 3K87A 2X1KA 4L82A 3U35A 3U5WA 2FG9A 2R6VA 3DMBA 4YWNA 3RH7A 5JABA 1G77A 1G76A 4N7RC 3F7EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z85 A;  2ASF A;  3IN6 A;  3DB0 A;  2I51 A;  1I0S A;  2HQ7 A;  2QCK A;  2PTF A;  2IG6 A;  1YOA A;  3BPK A;  2ECU A;  3B5M A;  4XHY A;  3BA3 A;  2NR4 A;  2D5M A;  3CB0 A;  3R5W A;  1DNL A;  1W9A A;  3DNH A;  3HY8 A;  3R5Z A;  2HTD A;  1W3R A;  2ARZ A;  2D37 A;  3ZOF A;  4IRA A;  4HMW A;  3SWJ A;  1W3Q A;  3NFW A;  2HTI A;  3AMF A;  4R82 A;  4Y9I A;  3ZOH A;  1EJE A;  3EC6 A;  3VYA A;  4ZKY A;  3K88 A;  2GJG A;  1NRG A;  3KYF A;  1RZ0 A;  3K86 A;  3R5P A;  1USF A;  3BNK A;  2IAB A;  1WGB A;  4YBN A;  1WV4 A;  2D38 A;  2I02 A;  4F07 A;  3FGE A;  2Q9K A;  3R5L A;  2D36 A;  5CHO A;  5CHE C;  4QVB A;  3VY5 A;  1FLM A;  4XJ2 A;  3A6R A;  2HHZ A;  2RE7 A;  4HMX A;  1RZ1 A;  1G79 A;  2HQ9 A;  2IML A;  3ZOG A;  2ECR A;  3CP3 A;  3R5Y A;  1VL7 A;  3GAS A;  2AQ6 A;  2A2J A;  2X1J A;  1USC A;  3PFT A;  1JNW A;  2RDE A;  1AXJ A;  1Y30 A;  3R5R A;  2ED4 A;  1W3O A;  3A6Q A;  1RFE A;  1XXO A;  3FKH A;  3U34 A;  1TY9 A;  4HX6 A;  3H96 A;  3KYG A;  3TGV A;  1T9M A;  4HMS A;  2FUR A;  1XHN A;  2FHQ A;  3E4V A;  3HMZ A;  4HMV A;  3A20 A;  3ZOE A;  3U0I A;  3AWH A;  2QEA A;  4HMU A;  1I0R A;  3VY2 A;  2OL5 A;  1CI0 A;  1WLK A;  3ZOC A;  3ZOD A;  5BNC A;  1G78 A;  2VPA A;  2OU5 A;  2R0X A;  1YLN A;  5ESC A;  4HMT A;  2E83 A;  1WLI A;  1W3P A;  3K87 A;  2X1K A;  4L82 A;  3U35 A;  3U5W A;  2FG9 A;  2R6V A;  3DMB A;  4YWN A;  3RH7 A;  5JAB A;  1G77 A;  1G76 A;  4N7R C;  3F7E A; 
#chains in the Genus database with same CATH topology
 4Z85 A;  2ASF A;  3IN6 A;  3DB0 A;  2I51 A;  1I0S A;  2HQ7 A;  2QCK A;  1Y12 A;  2PTF A;  2IG6 A;  1YOA A;  4W64 A;  3BPK A;  2ECU A;  2L1T A;  3B5M A;  4HKH A;  3BA3 A;  2NR4 A;  4XHY A;  2D5M A;  3CB0 A;  3R5W A;  1DNL A;  1W9A A;  3DNH A;  3HY8 A;  3R5Z A;  2HTD A;  4UHV A;  1W3R A;  2ARZ A;  2D37 A;  3ZOF A;  4IRA A;  4HMW A;  3SWJ A;  2GUJ A;  1W3Q A;  3NFW A;  2K4Q A;  2HTI A;  3AMF A;  4R82 A;  4Y9I A;  4MTK A;  3ZOH A;  1EJE A;  3EC6 A;  3VYA A;  4ZKY A;  3K88 A;  2GJG A;  1NRG A;  3KYF A;  1RZ0 A;  3K86 A;  3R5P A;  1USF A;  3BNK A;  2IAB A;  1WGB A;  4YBN A;  1WV4 A;  2D38 A;  2I02 A;  4F07 A;  3FGE A;  2Q9K A;  3R5L A;  2D36 A;  5CHO A;  5CHE C;  4QVB A;  3VY5 A;  1FLM A;  4XJ2 A;  3A6R A;  2HHZ A;  2RE7 A;  4HMX A;  1RZ1 A;  1G79 A;  2HQ9 A;  2IML A;  2P5Z X;  3ZOG A;  2ECR A;  3CP3 A;  3R5Y A;  1VL7 A;  3GAS A;  2AQ6 A;  2A2J A;  2X1J A;  4TV4 A;  1USC A;  3PFT A;  1JNW A;  2RDE A;  1AXJ A;  1Y30 A;  3R5R A;  2ED4 A;  1W3O A;  3A6Q A;  1RFE A;  1XXO A;  3FKH A;  3U34 A;  1TY9 A;  3HE1 A;  4HX6 A;  3H96 A;  3KYG A;  3TGV A;  1T9M A;  4HMS A;  2FUR A;  1XHN A;  2FHQ A;  3E4V A;  3HMZ A;  4HMV A;  3A20 A;  3ZOE A;  3U0I A;  3AWH A;  2QEA A;  4HMU A;  1I0R A;  3EAA A;  3VY2 A;  2OL5 A;  1CI0 A;  1WLK A;  3ZOC A;  3ZOD A;  5BNC A;  1G78 A;  2VPA A;  2OU5 A;  2R0X A;  1YLN A;  5ESC A;  4HMT A;  2E83 A;  1WLI A;  1W3P A;  3K87 A;  2X1K A;  4L82 A;  3U35 A;  3U5W A;  2FG9 A;  2R6V A;  3DMB A;  4YWN A;  3RH7 A;  5JAB A;  1G77 A;  1G76 A;  4N7R C;  3F7E A;  3V4H A; 
#chains in the Genus database with same CATH homology
 4Z85 A;  2ASF A;  3IN6 A;  3DB0 A;  2I51 A;  1I0S A;  2HQ7 A;  2QCK A;  2PTF A;  2IG6 A;  1YOA A;  3BPK A;  2ECU A;  3B5M A;  4XHY A;  3BA3 A;  2NR4 A;  2D5M A;  3CB0 A;  3R5W A;  1DNL A;  1W9A A;  3DNH A;  3HY8 A;  3R5Z A;  2HTD A;  1W3R A;  2ARZ A;  2D37 A;  3ZOF A;  4IRA A;  4HMW A;  3SWJ A;  1W3Q A;  3NFW A;  2HTI A;  3AMF A;  4R82 A;  4Y9I A;  3ZOH A;  1EJE A;  3EC6 A;  3VYA A;  4ZKY A;  3K88 A;  2GJG A;  1NRG A;  3KYF A;  1RZ0 A;  3K86 A;  3R5P A;  1USF A;  3BNK A;  2IAB A;  1WGB A;  4YBN A;  1WV4 A;  2D38 A;  2I02 A;  4F07 A;  3FGE A;  2Q9K A;  3R5L A;  2D36 A;  5CHO A;  5CHE C;  4QVB A;  3VY5 A;  1FLM A;  4XJ2 A;  3A6R A;  2HHZ A;  2RE7 A;  4HMX A;  1RZ1 A;  1G79 A;  2HQ9 A;  2IML A;  3ZOG A;  2ECR A;  3CP3 A;  3R5Y A;  1VL7 A;  3GAS A;  2AQ6 A;  2A2J A;  2X1J A;  1USC A;  3PFT A;  1JNW A;  2RDE A;  1AXJ A;  1Y30 A;  3R5R A;  2ED4 A;  1W3O A;  3A6Q A;  1RFE A;  1XXO A;  3FKH A;  3U34 A;  1TY9 A;  4HX6 A;  3H96 A;  3KYG A;  3TGV A;  1T9M A;  4HMS A;  2FUR A;  1XHN A;  2FHQ A;  3E4V A;  3HMZ A;  4HMV A;  3A20 A;  3ZOE A;  3U0I A;  3AWH A;  2QEA A;  4HMU A;  1I0R A;  3VY2 A;  2OL5 A;  1CI0 A;  1WLK A;  3ZOC A;  3ZOD A;  5BNC A;  1G78 A;  2VPA A;  2OU5 A;  2R0X A;  1YLN A;  5ESC A;  4HMT A;  2E83 A;  1WLI A;  1W3P A;  3K87 A;  2X1K A;  4L82 A;  3U35 A;  3U5W A;  2FG9 A;  2R6V A;  3DMB A;  4YWN A;  3RH7 A;  5JAB A;  1G77 A;  1G76 A;  4N7R C;  3F7E A; 
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