3VY2 | Genus

Total Genus 27

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	122
structure length	122
Chain Sequence	MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) rcsb
molecule keywords	FMN-binding protein
molecule tags	Electron transport
source organism	Desulfovibrio vulgaris
total genus	27
structure length	122
sequence length	122
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-09-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	3vy2A00

4ZKYA 2D37A 3PFTA 1XXOA 1YOAA 3R5RA 3R5LA 3R5PA 5ESCA 2PTFA 3FKHA 5CHOA 3A20A 2OL5A 2QCKA 1WLIA 3AWHA 2ECRA 4Z85A 1W3PA 2NR4A 2RDEA 4R82A 3U34A 2Q9KA 1W3QA 4HMTA 3K87A 1FLMA 3IN6A 4HMUA 1W9AA 1VL7A 1Y30A 3E4VA 4HX6A 2D36A 2ARZA 2I02A 2VPAA 4F07A 2HTIA 4XHYA 4HMXA 2FURA 4YBNA 3ZODA 1NRGA 2FHQA 2IMLA 3BA3A 1W3OA 4HMWA 2D5MA 2QEAA 3K88A 3VY5A 3KYFA 3GASA 1WV4A 1EJEA 3K86A 1G79A 4L82A 3ZOHA 2ED4A 3DNHA 3ZOEA 1AXJA 1XHNA 3CP3A 2R6VA 2ASFA 4N7RC 3BPKA 3NFWA 3HY8A 2HQ9A 3KYGA 2X1KA 3ZOGA 4IRAA 2HHZA 1G76A 2AQ6A 3A6QA 3U0IA 2GJGA 1T9MA 3R5WA 3U35A 4QVBA 3H96A 2R0XA 1TY9A 4Y9IA 3VY2A 1JNWA 3SWJA 1W3RA 1I0SA 3FGEA 3ZOCA 2ECUA 1WLKA 1G78A 2E83A 3EC6A 2RE7A 4HMSA 3BNKA 1WGBA 2D38A 3TGVA 1USFA 3R5YA 4HMVA 1DNLA 1RZ0A 3HMZA 1RZ1A 3CB0A 2IABA 3DMBA 1YLNA 2HQ7A 3DB0A 5BNCA 2OU5A 2IG6A 3R5ZA 2FG9A 3ZOFA 2I51A 2HTDA 1I0RA 1CI0A 4YWNA 5CHEC 3F7EA 3RH7A 3VYAA 3U5WA 4XJ2A 5JABA 1USCA 3AMFA 3B5MA 1G77A 1RFEA 2X1JA 2A2JA 3A6RA
chains in the Genus database with same CATH superfamily

4ZKYA 2D37A 3PFTA 1XXOA 4MTKA 4HKHA 1YOAA 3R5RA 3R5LA 3R5PA 5ESCA 2PTFA 3FKHA 5CHOA 3A20A 2OL5A 2QCKA 1WLIA 3AWHA 2ECRA 4Z85A 1W3PA 2NR4A 2RDEA 4R82A 3U34A 2Q9KA 1W3QA 2L1TA 3K87A 4HMTA 1FLMA 3IN6A 4HMUA 1W9AA 1VL7A 1Y30A 3E4VA 2K4QA 4HX6A 2D36A 2ARZA 2I02A 2VPAA 4F07A 2HTIA 4XHYA 2GUJA 4HMXA 2FURA 4YBNA 3ZODA 1NRGA 2FHQA 4W64A 2IMLA 3BA3A 1W3OA 4HMWA 2D5MA 2QEAA 3K88A 3VY5A 3KYFA 3GASA 1WV4A 1EJEA 3K86A 3V4HA 1G79A 4L82A 3ZOHA 2ED4A 3DNHA 3ZOEA 1AXJA 1XHNA 3CP3A 2R6VA 2ASFA 4N7RC 3BPKA 3NFWA 3HY8A 2HQ9A 3KYGA 2X1KA 3ZOGA 4IRAA 3HE1A 4UHVA 2HHZA 1G76A 2AQ6A 3A6QA 4TV4A 3U0IA 2GJGA 1T9MA 3R5WA 3U35A 4QVBA 3H96A 2R0XA 1TY9A 4Y9IA 3VY2A 1JNWA 3SWJA 1W3RA 1I0SA 3FGEA 3ZOCA 2ECUA 1WLKA 1Y12A 1G78A 2E83A 3EC6A 2RE7A 4HMSA 3BNKA 1WGBA 2D38A 3TGVA 1USFA 3R5YA 4HMVA 1DNLA 1RZ0A 3HMZA 1RZ1A 3CB0A 2IABA 3DMBA 1YLNA 2HQ7A 3DB0A 5BNCA 2OU5A 2IG6A 3R5ZA 2FG9A 3ZOFA 2I51A 2HTDA 1I0RA 1CI0A 4YWNA 5CHEC 3F7EA 3RH7A 3VYAA 3U5WA 4XJ2A 5JABA 1USCA 3EAAA 3AMFA 3B5MA 1G77A 1RFEA 2P5ZX 2X1JA 2A2JA 3A6RA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4ZKY A;  2D37 A;  3PFT A;  1XXO A;  1YOA A;  3R5R A;  3R5L A;  3R5P A;  5ESC A;  2PTF A;  3FKH A;  5CHO A;  3A20 A;  2OL5 A;  2QCK A;  1WLI A;  3AWH A;  2ECR A;  4Z85 A;  1W3P A;  2NR4 A;  2RDE A;  4R82 A;  3U34 A;  2Q9K A;  1W3Q A;  4HMT A;  3K87 A;  1FLM A;  3IN6 A;  4HMU A;  1W9A A;  1VL7 A;  1Y30 A;  3E4V A;  4HX6 A;  2D36 A;  2ARZ A;  2I02 A;  2VPA A;  4F07 A;  2HTI A;  4XHY A;  4HMX A;  2FUR A;  4YBN A;  3ZOD A;  1NRG A;  2FHQ A;  2IML A;  3BA3 A;  1W3O A;  4HMW A;  2D5M A;  2QEA A;  3K88 A;  3VY5 A;  3KYF A;  3GAS A;  1WV4 A;  1EJE A;  3K86 A;  1G79 A;  4L82 A;  3ZOH A;  2ED4 A;  3DNH A;  3ZOE A;  1AXJ A;  1XHN A;  3CP3 A;  2R6V A;  2ASF A;  4N7R C;  3BPK A;  3NFW A;  3HY8 A;  2HQ9 A;  3KYG A;  2X1K A;  3ZOG A;  4IRA A;  2HHZ A;  1G76 A;  2AQ6 A;  3A6Q A;  3U0I A;  2GJG A;  1T9M A;  3R5W A;  3U35 A;  4QVB A;  3H96 A;  2R0X A;  1TY9 A;  4Y9I A;  3VY2 A;  1JNW A;  3SWJ A;  1W3R A;  1I0S A;  3FGE A;  3ZOC A;  2ECU A;  1WLK A;  1G78 A;  2E83 A;  3EC6 A;  2RE7 A;  4HMS A;  3BNK A;  1WGB A;  2D38 A;  3TGV A;  1USF A;  3R5Y A;  4HMV A;  1DNL A;  1RZ0 A;  3HMZ A;  1RZ1 A;  3CB0 A;  2IAB A;  3DMB A;  1YLN A;  2HQ7 A;  3DB0 A;  5BNC A;  2OU5 A;  2IG6 A;  3R5Z A;  2FG9 A;  3ZOF A;  2I51 A;  2HTD A;  1I0R A;  1CI0 A;  4YWN A;  5CHE C;  3F7E A;  3RH7 A;  3VYA A;  3U5W A;  4XJ2 A;  5JAB A;  1USC A;  3AMF A;  3B5M A;  1G77 A;  1RFE A;  2X1J A;  2A2J A;  3A6R A; 
#chains in the Genus database with same CATH topology
 4ZKY A;  2D37 A;  3PFT A;  1XXO A;  4MTK A;  4HKH A;  1YOA A;  3R5R A;  3R5L A;  3R5P A;  5ESC A;  2PTF A;  3FKH A;  5CHO A;  3A20 A;  2OL5 A;  2QCK A;  1WLI A;  3AWH A;  2ECR A;  4Z85 A;  1W3P A;  2NR4 A;  2RDE A;  4R82 A;  3U34 A;  2Q9K A;  1W3Q A;  2L1T A;  3K87 A;  4HMT A;  1FLM A;  3IN6 A;  4HMU A;  1W9A A;  1VL7 A;  1Y30 A;  3E4V A;  2K4Q A;  4HX6 A;  2D36 A;  2ARZ A;  2I02 A;  2VPA A;  4F07 A;  2HTI A;  4XHY A;  2GUJ A;  4HMX A;  2FUR A;  4YBN A;  3ZOD A;  1NRG A;  2FHQ A;  4W64 A;  2IML A;  3BA3 A;  1W3O A;  4HMW A;  2D5M A;  2QEA A;  3K88 A;  3VY5 A;  3KYF A;  3GAS A;  1WV4 A;  1EJE A;  3K86 A;  3V4H A;  1G79 A;  4L82 A;  3ZOH A;  2ED4 A;  3DNH A;  3ZOE A;  1AXJ A;  1XHN A;  3CP3 A;  2R6V A;  2ASF A;  4N7R C;  3BPK A;  3NFW A;  3HY8 A;  2HQ9 A;  3KYG A;  2X1K A;  3ZOG A;  4IRA A;  3HE1 A;  4UHV A;  2HHZ A;  1G76 A;  2AQ6 A;  3A6Q A;  4TV4 A;  3U0I A;  2GJG A;  1T9M A;  3R5W A;  3U35 A;  4QVB A;  3H96 A;  2R0X A;  1TY9 A;  4Y9I A;  3VY2 A;  1JNW A;  3SWJ A;  1W3R A;  1I0S A;  3FGE A;  3ZOC A;  2ECU A;  1WLK A;  1Y12 A;  1G78 A;  2E83 A;  3EC6 A;  2RE7 A;  4HMS A;  3BNK A;  1WGB A;  2D38 A;  3TGV A;  1USF A;  3R5Y A;  4HMV A;  1DNL A;  1RZ0 A;  3HMZ A;  1RZ1 A;  3CB0 A;  2IAB A;  3DMB A;  1YLN A;  2HQ7 A;  3DB0 A;  5BNC A;  2OU5 A;  2IG6 A;  3R5Z A;  2FG9 A;  3ZOF A;  2I51 A;  2HTD A;  1I0R A;  1CI0 A;  4YWN A;  5CHE C;  3F7E A;  3RH7 A;  3VYA A;  3U5W A;  4XJ2 A;  5JAB A;  1USC A;  3EAA A;  3AMF A;  3B5M A;  1G77 A;  1RFE A;  2P5Z X;  2X1J A;  2A2J A;  3A6R A; 
#chains in the Genus database with same CATH homology
 4ZKY A;  2D37 A;  3PFT A;  1XXO A;  1YOA A;  3R5R A;  3R5L A;  3R5P A;  5ESC A;  2PTF A;  3FKH A;  5CHO A;  3A20 A;  2OL5 A;  2QCK A;  1WLI A;  3AWH A;  2ECR A;  4Z85 A;  1W3P A;  2NR4 A;  2RDE A;  4R82 A;  3U34 A;  2Q9K A;  1W3Q A;  4HMT A;  3K87 A;  1FLM A;  3IN6 A;  4HMU A;  1W9A A;  1VL7 A;  1Y30 A;  3E4V A;  4HX6 A;  2D36 A;  2ARZ A;  2I02 A;  2VPA A;  4F07 A;  2HTI A;  4XHY A;  4HMX A;  2FUR A;  4YBN A;  3ZOD A;  1NRG A;  2FHQ A;  2IML A;  3BA3 A;  1W3O A;  4HMW A;  2D5M A;  2QEA A;  3K88 A;  3VY5 A;  3KYF A;  3GAS A;  1WV4 A;  1EJE A;  3K86 A;  1G79 A;  4L82 A;  3ZOH A;  2ED4 A;  3DNH A;  3ZOE A;  1AXJ A;  1XHN A;  3CP3 A;  2R6V A;  2ASF A;  4N7R C;  3BPK A;  3NFW A;  3HY8 A;  2HQ9 A;  3KYG A;  2X1K A;  3ZOG A;  4IRA A;  2HHZ A;  1G76 A;  2AQ6 A;  3A6Q A;  3U0I A;  2GJG A;  1T9M A;  3R5W A;  3U35 A;  4QVB A;  3H96 A;  2R0X A;  1TY9 A;  4Y9I A;  3VY2 A;  1JNW A;  3SWJ A;  1W3R A;  1I0S A;  3FGE A;  3ZOC A;  2ECU A;  1WLK A;  1G78 A;  2E83 A;  3EC6 A;  2RE7 A;  4HMS A;  3BNK A;  1WGB A;  2D38 A;  3TGV A;  1USF A;  3R5Y A;  4HMV A;  1DNL A;  1RZ0 A;  3HMZ A;  1RZ1 A;  3CB0 A;  2IAB A;  3DMB A;  1YLN A;  2HQ7 A;  3DB0 A;  5BNC A;  2OU5 A;  2IG6 A;  3R5Z A;  2FG9 A;  3ZOF A;  2I51 A;  2HTD A;  1I0R A;  1CI0 A;  4YWN A;  5CHE C;  3F7E A;  3RH7 A;  3VYA A;  3U5W A;  4XJ2 A;  5JAB A;  1USC A;  3AMF A;  3B5M A;  1G77 A;  1RFE A;  2X1J A;  2A2J A;  3A6R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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3VY2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations