3VY2A

N33d mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (39-42)AH2 (52-60)S1 (15-22)S2 (25-32)3H1 (33-35)S4 (43-48)S7 (109-120)AH3 (96-100)TIV3 (48-51)S5 (63-74)TI2 (75-78)TI3 (101-104)TVIII1 (102-105)TI4 (104-107)S3 (37-39)S6 (79-92)AH1 (4-11)Updating...
connected with : NaN
molecule tags Electron transport
source organism Desulfovibrio vulgaris
publication title Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule keywords FMN-binding protein
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vy2A00
3R5ZA 1XXOA 3CP3A 3NFWA 3R5YA 3H96A 2RDEA 4Y9IA 2ARZA 1I0RA 2HQ7A 3KYGA 1JNWA 2E83A 4Z85A 3ZOCA 3VYAA 4HMXA 3A6QA 2ECRA 3VY2A 4HMTA 3DMBA 2HTIA 1Y30A 3ZOGA 4YWNA 1W3PA 1FLMA 4IRAA 2IG6A 3HMZA 2FURA 3K86A 1XHNA 3K88A 3ZOEA 2IMLA 1NRGA 1TY9A 2OU5A 2IABA 1I0SA 2FG9A 2GJGA 1CI0A 3PFTA 4HMUA 2AQ6A 1YLNA 3CB0A 3ZOFA 5CHEC 3HY8A 2VPAA 2D36A 3K87A 4QVBA 2R6VA 2I02A 3BNKA 2D38A 2QCKA 4HMWA 3A6RA 4ZKYA 5JABA 4XHYA 3GASA 4N7RC 1YOAA 4HX6A 3IN6A 2NR4A 1G77A 1WLIA 2X1JA 1WGBA 3R5PA 1W3RA 3AMFA 2ECUA 3BA3A 2HHZA 1RZ0A 1W3QA 3EC6A 2HTDA 3R5RA 5ESCA 3U35A 1RFEA 1VL7A 2D37A 1T9MA 1USCA 3KYFA 3ZODA 1AXJA 2A2JA 2FHQA 2I51A 4F07A 3F7EA 3DB0A 3BPKA 1WLKA 4L82A 2Q9KA 1W9AA 3DNHA 3RH7A 5BNCA 3FGEA 4XJ2A 1G78A 3E4VA 2ED4A 2ASFA 3AWHA 5CHOA 1DNLA 3TGVA 2HQ9A 2D5MA 1G76A 2QEAA 3FKHA 3ZOHA 3SWJA 4HMSA 3U0IA 3B5MA 2X1KA 3U5WA 1USFA 3R5WA 3VY5A 1RZ1A 2OL5A 1EJEA 3U34A 3A20A 3R5LA 4YBNA 4R82A 1G79A 4HMVA 1WV4A 2PTFA 2R0XA 2RE7A 1W3OA
chains in the Genus database with same CATH superfamily
3R5ZA 3HE1A 1XXOA 3CP3A 3NFWA 3R5YA 3H96A 2RDEA 4Y9IA 2ARZA 1I0RA 2HQ7A 3KYGA 1JNWA 2E83A 4Z85A 3ZOCA 3VYAA 4HMXA 3A6QA 2ECRA 4HKHA 4HMTA 3DMBA 2HTIA 3VY2A 1Y30A 3ZOGA 4YWNA 1W3PA 4MTKA 1FLMA 4IRAA 2IG6A 3HMZA 2FURA 3K86A 1XHNA 3K88A 3ZOEA 2IMLA 1NRGA 1TY9A 2OU5A 2IABA 1I0SA 2FG9A 3EAAA 2GJGA 1CI0A 3PFTA 4HMUA 2AQ6A 1YLNA 3CB0A 3ZOFA 5CHEC 3HY8A 2VPAA 2D36A 3K87A 4QVBA 2R6VA 2I02A 3BNKA 2D38A 2P5ZX 2QCKA 4HMWA 3A6RA 4ZKYA 5JABA 4XHYA 3GASA 4N7RC 1YOAA 4HX6A 3IN6A 2NR4A 1G77A 1WLIA 2X1JA 1WGBA 3R5PA 1W3RA 3AMFA 2ECUA 4W64A 3BA3A 2HHZA 1RZ0A 1W3QA 3EC6A 2HTDA 3R5RA 5ESCA 3U35A 1RFEA 1VL7A 2D37A 1T9MA 1USCA 3KYFA 3ZODA 1AXJA 2K4QA 2A2JA 2FHQA 2I51A 4F07A 1Y12A 3F7EA 3DB0A 3BPKA 1WLKA 3V4HA 4L82A 2Q9KA 1W9AA 3DNHA 3RH7A 2L1TA 5BNCA 3FGEA 4XJ2A 1G78A 3E4VA 2ED4A 2GUJA 2ASFA 3AWHA 5CHOA 1DNLA 3TGVA 2HQ9A 2D5MA 1G76A 2QEAA 3FKHA 3ZOHA 3SWJA 4TV4A 4HMSA 3U0IA 3B5MA 2X1KA 3U5WA 4UHVA 1USFA 3R5WA 3VY5A 1RZ1A 2OL5A 1EJEA 3U34A 3A20A 3R5LA 4YBNA 4R82A 1G79A 4HMVA 1WV4A 2PTFA 2R0XA 2RE7A 1W3OA
chains in the Genus database with same CATH topology
3R5ZA 1XXOA 3CP3A 3NFWA 3R5YA 3H96A 2RDEA 4Y9IA 2ARZA 1I0RA 2HQ7A 3KYGA 1JNWA 2E83A 4Z85A 3ZOCA 3VYAA 4HMXA 3A6QA 2ECRA 3VY2A 4HMTA 3DMBA 2HTIA 1Y30A 3ZOGA 4YWNA 1W3PA 1FLMA 4IRAA 2IG6A 3HMZA 2FURA 3K86A 1XHNA 3K88A 3ZOEA 2IMLA 1NRGA 1TY9A 2OU5A 2IABA 1I0SA 2FG9A 2GJGA 1CI0A 3PFTA 4HMUA 2AQ6A 1YLNA 3CB0A 3ZOFA 5CHEC 3HY8A 2VPAA 2D36A 3K87A 4QVBA 2R6VA 2I02A 3BNKA 2D38A 2QCKA 4HMWA 3A6RA 4ZKYA 5JABA 4XHYA 3GASA 4N7RC 1YOAA 4HX6A 3IN6A 2NR4A 1G77A 1WLIA 2X1JA 1WGBA 3R5PA 1W3RA 3AMFA 2ECUA 3BA3A 2HHZA 1RZ0A 1W3QA 3EC6A 2HTDA 3R5RA 5ESCA 3U35A 1RFEA 1VL7A 2D37A 1T9MA 1USCA 3KYFA 3ZODA 1AXJA 2A2JA 2FHQA 2I51A 4F07A 3F7EA 3DB0A 3BPKA 1WLKA 4L82A 2Q9KA 1W9AA 3DNHA 3RH7A 5BNCA 3FGEA 4XJ2A 1G78A 3E4VA 2ED4A 2ASFA 3AWHA 5CHOA 1DNLA 3TGVA 2HQ9A 2D5MA 1G76A 2QEAA 3FKHA 3ZOHA 3SWJA 4HMSA 3U0IA 3B5MA 2X1KA 3U5WA 1USFA 3R5WA 3VY5A 1RZ1A 2OL5A 1EJEA 3U34A 3A20A 3R5LA 4YBNA 4R82A 1G79A 4HMVA 1WV4A 2PTFA 2R0XA 2RE7A 1W3OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R5Z A;  1XXO A;  3CP3 A;  3NFW A;  3R5Y A;  3H96 A;  2RDE A;  4Y9I A;  2ARZ A;  1I0R A;  2HQ7 A;  3KYG A;  1JNW A;  2E83 A;  4Z85 A;  3ZOC A;  3VYA A;  4HMX A;  3A6Q A;  2ECR A;  3VY2 A;  4HMT A;  3DMB A;  2HTI A;  1Y30 A;  3ZOG A;  4YWN A;  1W3P A;  1FLM A;  4IRA A;  2IG6 A;  3HMZ A;  2FUR A;  3K86 A;  1XHN A;  3K88 A;  3ZOE A;  2IML A;  1NRG A;  1TY9 A;  2OU5 A;  2IAB A;  1I0S A;  2FG9 A;  2GJG A;  1CI0 A;  3PFT A;  4HMU A;  2AQ6 A;  1YLN A;  3CB0 A;  3ZOF A;  5CHE C;  3HY8 A;  2VPA A;  2D36 A;  3K87 A;  4QVB A;  2R6V A;  2I02 A;  3BNK A;  2D38 A;  2QCK A;  4HMW A;  3A6R A;  4ZKY A;  5JAB A;  4XHY A;  3GAS A;  4N7R C;  1YOA A;  4HX6 A;  3IN6 A;  2NR4 A;  1G77 A;  1WLI A;  2X1J A;  1WGB A;  3R5P A;  1W3R A;  3AMF A;  2ECU A;  3BA3 A;  2HHZ A;  1RZ0 A;  1W3Q A;  3EC6 A;  2HTD A;  3R5R A;  5ESC A;  3U35 A;  1RFE A;  1VL7 A;  2D37 A;  1T9M A;  1USC A;  3KYF A;  3ZOD A;  1AXJ A;  2A2J A;  2FHQ A;  2I51 A;  4F07 A;  3F7E A;  3DB0 A;  3BPK A;  1WLK A;  4L82 A;  2Q9K A;  1W9A A;  3DNH A;  3RH7 A;  5BNC A;  3FGE A;  4XJ2 A;  1G78 A;  3E4V A;  2ED4 A;  2ASF A;  3AWH A;  5CHO A;  1DNL A;  3TGV A;  2HQ9 A;  2D5M A;  1G76 A;  2QEA A;  3FKH A;  3ZOH A;  3SWJ A;  4HMS A;  3U0I A;  3B5M A;  2X1K A;  3U5W A;  1USF A;  3R5W A;  3VY5 A;  1RZ1 A;  2OL5 A;  1EJE A;  3U34 A;  3A20 A;  3R5L A;  4YBN A;  4R82 A;  1G79 A;  4HMV A;  1WV4 A;  2PTF A;  2R0X A;  2RE7 A;  1W3O A; 
#chains in the Genus database with same CATH topology
 3R5Z A;  3HE1 A;  1XXO A;  3CP3 A;  3NFW A;  3R5Y A;  3H96 A;  2RDE A;  4Y9I A;  2ARZ A;  1I0R A;  2HQ7 A;  3KYG A;  1JNW A;  2E83 A;  4Z85 A;  3ZOC A;  3VYA A;  4HMX A;  3A6Q A;  2ECR A;  4HKH A;  4HMT A;  3DMB A;  2HTI A;  3VY2 A;  1Y30 A;  3ZOG A;  4YWN A;  1W3P A;  4MTK A;  1FLM A;  4IRA A;  2IG6 A;  3HMZ A;  2FUR A;  3K86 A;  1XHN A;  3K88 A;  3ZOE A;  2IML A;  1NRG A;  1TY9 A;  2OU5 A;  2IAB A;  1I0S A;  2FG9 A;  3EAA A;  2GJG A;  1CI0 A;  3PFT A;  4HMU A;  2AQ6 A;  1YLN A;  3CB0 A;  3ZOF A;  5CHE C;  3HY8 A;  2VPA A;  2D36 A;  3K87 A;  4QVB A;  2R6V A;  2I02 A;  3BNK A;  2D38 A;  2P5Z X;  2QCK A;  4HMW A;  3A6R A;  4ZKY A;  5JAB A;  4XHY A;  3GAS A;  4N7R C;  1YOA A;  4HX6 A;  3IN6 A;  2NR4 A;  1G77 A;  1WLI A;  2X1J A;  1WGB A;  3R5P A;  1W3R A;  3AMF A;  2ECU A;  4W64 A;  3BA3 A;  2HHZ A;  1RZ0 A;  1W3Q A;  3EC6 A;  2HTD A;  3R5R A;  5ESC A;  3U35 A;  1RFE A;  1VL7 A;  2D37 A;  1T9M A;  1USC A;  3KYF A;  3ZOD A;  1AXJ A;  2K4Q A;  2A2J A;  2FHQ A;  2I51 A;  4F07 A;  1Y12 A;  3F7E A;  3DB0 A;  3BPK A;  1WLK A;  3V4H A;  4L82 A;  2Q9K A;  1W9A A;  3DNH A;  3RH7 A;  2L1T A;  5BNC A;  3FGE A;  4XJ2 A;  1G78 A;  3E4V A;  2ED4 A;  2GUJ A;  2ASF A;  3AWH A;  5CHO A;  1DNL A;  3TGV A;  2HQ9 A;  2D5M A;  1G76 A;  2QEA A;  3FKH A;  3ZOH A;  3SWJ A;  4TV4 A;  4HMS A;  3U0I A;  3B5M A;  2X1K A;  3U5W A;  4UHV A;  1USF A;  3R5W A;  3VY5 A;  1RZ1 A;  2OL5 A;  1EJE A;  3U34 A;  3A20 A;  3R5L A;  4YBN A;  4R82 A;  1G79 A;  4HMV A;  1WV4 A;  2PTF A;  2R0X A;  2RE7 A;  1W3O A; 
#chains in the Genus database with same CATH homology
 3R5Z A;  1XXO A;  3CP3 A;  3NFW A;  3R5Y A;  3H96 A;  2RDE A;  4Y9I A;  2ARZ A;  1I0R A;  2HQ7 A;  3KYG A;  1JNW A;  2E83 A;  4Z85 A;  3ZOC A;  3VYA A;  4HMX A;  3A6Q A;  2ECR A;  3VY2 A;  4HMT A;  3DMB A;  2HTI A;  1Y30 A;  3ZOG A;  4YWN A;  1W3P A;  1FLM A;  4IRA A;  2IG6 A;  3HMZ A;  2FUR A;  3K86 A;  1XHN A;  3K88 A;  3ZOE A;  2IML A;  1NRG A;  1TY9 A;  2OU5 A;  2IAB A;  1I0S A;  2FG9 A;  2GJG A;  1CI0 A;  3PFT A;  4HMU A;  2AQ6 A;  1YLN A;  3CB0 A;  3ZOF A;  5CHE C;  3HY8 A;  2VPA A;  2D36 A;  3K87 A;  4QVB A;  2R6V A;  2I02 A;  3BNK A;  2D38 A;  2QCK A;  4HMW A;  3A6R A;  4ZKY A;  5JAB A;  4XHY A;  3GAS A;  4N7R C;  1YOA A;  4HX6 A;  3IN6 A;  2NR4 A;  1G77 A;  1WLI A;  2X1J A;  1WGB A;  3R5P A;  1W3R A;  3AMF A;  2ECU A;  3BA3 A;  2HHZ A;  1RZ0 A;  1W3Q A;  3EC6 A;  2HTD A;  3R5R A;  5ESC A;  3U35 A;  1RFE A;  1VL7 A;  2D37 A;  1T9M A;  1USC A;  3KYF A;  3ZOD A;  1AXJ A;  2A2J A;  2FHQ A;  2I51 A;  4F07 A;  3F7E A;  3DB0 A;  3BPK A;  1WLK A;  4L82 A;  2Q9K A;  1W9A A;  3DNH A;  3RH7 A;  5BNC A;  3FGE A;  4XJ2 A;  1G78 A;  3E4V A;  2ED4 A;  2ASF A;  3AWH A;  5CHO A;  1DNL A;  3TGV A;  2HQ9 A;  2D5M A;  1G76 A;  2QEA A;  3FKH A;  3ZOH A;  3SWJ A;  4HMS A;  3U0I A;  3B5M A;  2X1K A;  3U5W A;  1USF A;  3R5W A;  3VY5 A;  1RZ1 A;  2OL5 A;  1EJE A;  3U34 A;  3A20 A;  3R5L A;  4YBN A;  4R82 A;  1G79 A;  4HMV A;  1WV4 A;  2PTF A;  2R0X A;  2RE7 A;  1W3O A; 
1AXJA 1FLMA 1WLIA 1WLKA 2E83A 3A20A 3A6RA 3AMFA 3VY5A
similar chains in the Genus database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1AXJ A; 1FLM A; 1WLI A; 1WLK A; 2E83 A; 3A20 A; 3A6R A; 3AMF A; 3VY5 A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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