3VY2A

N33d mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (39-42)AH2 (52-60)S1 (15-22)S2 (25-32)3H1 (33-35)S4 (43-48)S7 (109-120)AH3 (96-100)TIV3 (48-51)S5 (63-74)TI2 (75-78)TI3 (101-104)TVIII1 (102-105)TI4 (104-107)S3 (37-39)S6 (79-92)AH1 (4-11)Updating...
connected with : NaN
publication title Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule keywords FMN-binding protein
molecule tags Electron transport
source organism Desulfovibrio vulgaris
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vy2A00
3VY5A 1WLKA 3DNHA 3VY2A 2RE7A 1W9AA 4L82A 2Q9KA 2OL5A 2NR4A 3BNKA 2ED4A 1T9MA 1I0SA 3EC6A 3DMBA 3R5RA 4Z85A 2FURA 2HQ7A 4R82A 3BA3A 2X1KA 3F7EA 1W3RA 1VL7A 2HTDA 3U34A 1FLMA 2ARZA 3ZOFA 3A6RA 1W3PA 1G79A 1WGBA 4XJ2A 3AWHA 3RH7A 2E83A 3R5LA 2GJGA 4HMSA 5BNCA 3U0IA 1G77A 3ZODA 2R0XA 4Y9IA 2ASFA 4XHYA 4IRAA 3VYAA 2D37A 3SWJA 4YWNA 4HMTA 3NFWA 3U5WA 1W3QA 3K88A 3CP3A 3HY8A 3KYFA 1USCA 3IN6A 2IG6A 1EJEA 2FG9A 3E4VA 3K87A 4HMXA 2I51A 2ECUA 1G76A 2ECRA 1Y30A 1XHNA 2IABA 2I02A 1RZ0A 3U35A 2D36A 3ZOCA 5JABA 2AQ6A 4HMUA 4HMWA 3H96A 2HTIA 1DNLA 2IMLA 1TY9A 4QVBA 3ZOEA 3A20A 1WLIA 1W3OA 3R5YA 5ESCA 3CB0A 3HMZA 2HHZA 2VPAA 3FKHA 5CHOA 3DB0A 3PFTA 4F07A 5CHEC 2FHQA 1RFEA 1RZ1A 1WV4A 2R6VA 3FGEA 1XXOA 1YOAA 2RDEA 4HMVA 1I0RA 1CI0A 3AMFA 3TGVA 3R5ZA 3R5PA 2D5MA 1AXJA 2QEAA 2OU5A 2A2JA 3ZOGA 3B5MA 2D38A 1G78A 2PTFA 2QCKA 2HQ9A 1NRGA 3GASA 3ZOHA 4ZKYA 4YBNA 3K86A 4HX6A 3BPKA 1USFA 3KYGA 3R5WA 2X1JA 3A6QA 1YLNA 4N7RC 1JNWA
chains in the Genus database with same CATH superfamily
3VY5A 1WLKA 3DNHA 3VY2A 2RE7A 1W9AA 4L82A 2Q9KA 2OL5A 2NR4A 3BNKA 4UHVA 2ED4A 1T9MA 1I0SA 3EC6A 3DMBA 3R5RA 4Z85A 2FURA 2HQ7A 4R82A 3BA3A 2X1KA 3F7EA 1W3RA 1VL7A 2HTDA 3U34A 1FLMA 2L1TA 2ARZA 3ZOFA 1W3PA 3A6RA 1G79A 1WGBA 4HKHA 3AWHA 4XJ2A 3RH7A 2E83A 3R5LA 2GJGA 2P5ZX 4HMSA 5BNCA 3U0IA 1G77A 3ZODA 2R0XA 4Y9IA 2ASFA 4XHYA 4IRAA 3VYAA 2D37A 3SWJA 4YWNA 4HMTA 2K4QA 3NFWA 3U5WA 1W3QA 3K88A 4MTKA 3CP3A 3HY8A 3KYFA 1USCA 3IN6A 1Y12A 2IG6A 1EJEA 2FG9A 3E4VA 3K87A 4HMXA 2I51A 2ECUA 1G76A 2ECRA 1Y30A 1XHNA 2IABA 2I02A 1RZ0A 3U35A 2D36A 3ZOCA 5JABA 2AQ6A 4HMUA 4HMWA 3H96A 2HTIA 1DNLA 2IMLA 3EAAA 1TY9A 4QVBA 3HE1A 3ZOEA 3A20A 1WLIA 1W3OA 3R5YA 5ESCA 3CB0A 3HMZA 2HHZA 2VPAA 3FKHA 4TV4A 5CHOA 3DB0A 3PFTA 4F07A 5CHEC 2FHQA 1RFEA 1RZ1A 1WV4A 2R6VA 3FGEA 1XXOA 1YOAA 2RDEA 4HMVA 1I0RA 1CI0A 3AMFA 3TGVA 3R5ZA 3R5PA 2D5MA 1AXJA 2QEAA 2OU5A 2A2JA 3ZOGA 3B5MA 2D38A 1G78A 2PTFA 2GUJA 2QCKA 2HQ9A 1NRGA 3GASA 3ZOHA 4W64A 4YBNA 4ZKYA 3K86A 4HX6A 3BPKA 1USFA 3KYGA 3R5WA 2X1JA 3A6QA 1YLNA 4N7RC 1JNWA 3V4HA
chains in the Genus database with same CATH topology
3VY5A 1WLKA 3DNHA 3VY2A 2RE7A 1W9AA 4L82A 2Q9KA 2OL5A 2NR4A 3BNKA 2ED4A 1T9MA 1I0SA 3EC6A 3DMBA 3R5RA 4Z85A 2FURA 2HQ7A 4R82A 3BA3A 2X1KA 3F7EA 1W3RA 1VL7A 2HTDA 3U34A 1FLMA 2ARZA 3ZOFA 3A6RA 1W3PA 1G79A 1WGBA 4XJ2A 3AWHA 3RH7A 2E83A 3R5LA 2GJGA 4HMSA 5BNCA 3U0IA 1G77A 3ZODA 2R0XA 4Y9IA 2ASFA 4XHYA 4IRAA 3VYAA 2D37A 3SWJA 4YWNA 4HMTA 3NFWA 3U5WA 1W3QA 3K88A 3CP3A 3HY8A 3KYFA 1USCA 3IN6A 2IG6A 1EJEA 2FG9A 3E4VA 3K87A 4HMXA 2I51A 2ECUA 1G76A 2ECRA 1Y30A 1XHNA 2IABA 2I02A 1RZ0A 3U35A 2D36A 3ZOCA 5JABA 2AQ6A 4HMUA 4HMWA 3H96A 2HTIA 1DNLA 2IMLA 1TY9A 4QVBA 3ZOEA 3A20A 1WLIA 1W3OA 3R5YA 5ESCA 3CB0A 3HMZA 2HHZA 2VPAA 3FKHA 5CHOA 3DB0A 3PFTA 4F07A 5CHEC 2FHQA 1RFEA 1RZ1A 1WV4A 2R6VA 3FGEA 1XXOA 1YOAA 2RDEA 4HMVA 1I0RA 1CI0A 3AMFA 3TGVA 3R5ZA 3R5PA 2D5MA 1AXJA 2QEAA 2OU5A 2A2JA 3ZOGA 3B5MA 2D38A 1G78A 2PTFA 2QCKA 2HQ9A 1NRGA 3GASA 3ZOHA 4ZKYA 4YBNA 3K86A 4HX6A 3BPKA 1USFA 3KYGA 3R5WA 2X1JA 3A6QA 1YLNA 4N7RC 1JNWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VY5 A;  1WLK A;  3DNH A;  3VY2 A;  2RE7 A;  1W9A A;  4L82 A;  2Q9K A;  2OL5 A;  2NR4 A;  3BNK A;  2ED4 A;  1T9M A;  1I0S A;  3EC6 A;  3DMB A;  3R5R A;  4Z85 A;  2FUR A;  2HQ7 A;  4R82 A;  3BA3 A;  2X1K A;  3F7E A;  1W3R A;  1VL7 A;  2HTD A;  3U34 A;  1FLM A;  2ARZ A;  3ZOF A;  3A6R A;  1W3P A;  1G79 A;  1WGB A;  4XJ2 A;  3AWH A;  3RH7 A;  2E83 A;  3R5L A;  2GJG A;  4HMS A;  5BNC A;  3U0I A;  1G77 A;  3ZOD A;  2R0X A;  4Y9I A;  2ASF A;  4XHY A;  4IRA A;  3VYA A;  2D37 A;  3SWJ A;  4YWN A;  4HMT A;  3NFW A;  3U5W A;  1W3Q A;  3K88 A;  3CP3 A;  3HY8 A;  3KYF A;  1USC A;  3IN6 A;  2IG6 A;  1EJE A;  2FG9 A;  3E4V A;  3K87 A;  4HMX A;  2I51 A;  2ECU A;  1G76 A;  2ECR A;  1Y30 A;  1XHN A;  2IAB A;  2I02 A;  1RZ0 A;  3U35 A;  2D36 A;  3ZOC A;  5JAB A;  2AQ6 A;  4HMU A;  4HMW A;  3H96 A;  2HTI A;  1DNL A;  2IML A;  1TY9 A;  4QVB A;  3ZOE A;  3A20 A;  1WLI A;  1W3O A;  3R5Y A;  5ESC A;  3CB0 A;  3HMZ A;  2HHZ A;  2VPA A;  3FKH A;  5CHO A;  3DB0 A;  3PFT A;  4F07 A;  5CHE C;  2FHQ A;  1RFE A;  1RZ1 A;  1WV4 A;  2R6V A;  3FGE A;  1XXO A;  1YOA A;  2RDE A;  4HMV A;  1I0R A;  1CI0 A;  3AMF A;  3TGV A;  3R5Z A;  3R5P A;  2D5M A;  1AXJ A;  2QEA A;  2OU5 A;  2A2J A;  3ZOG A;  3B5M A;  2D38 A;  1G78 A;  2PTF A;  2QCK A;  2HQ9 A;  1NRG A;  3GAS A;  3ZOH A;  4ZKY A;  4YBN A;  3K86 A;  4HX6 A;  3BPK A;  1USF A;  3KYG A;  3R5W A;  2X1J A;  3A6Q A;  1YLN A;  4N7R C;  1JNW A; 
#chains in the Genus database with same CATH topology
 3VY5 A;  1WLK A;  3DNH A;  3VY2 A;  2RE7 A;  1W9A A;  4L82 A;  2Q9K A;  2OL5 A;  2NR4 A;  3BNK A;  4UHV A;  2ED4 A;  1T9M A;  1I0S A;  3EC6 A;  3DMB A;  3R5R A;  4Z85 A;  2FUR A;  2HQ7 A;  4R82 A;  3BA3 A;  2X1K A;  3F7E A;  1W3R A;  1VL7 A;  2HTD A;  3U34 A;  1FLM A;  2L1T A;  2ARZ A;  3ZOF A;  1W3P A;  3A6R A;  1G79 A;  1WGB A;  4HKH A;  3AWH A;  4XJ2 A;  3RH7 A;  2E83 A;  3R5L A;  2GJG A;  2P5Z X;  4HMS A;  5BNC A;  3U0I A;  1G77 A;  3ZOD A;  2R0X A;  4Y9I A;  2ASF A;  4XHY A;  4IRA A;  3VYA A;  2D37 A;  3SWJ A;  4YWN A;  4HMT A;  2K4Q A;  3NFW A;  3U5W A;  1W3Q A;  3K88 A;  4MTK A;  3CP3 A;  3HY8 A;  3KYF A;  1USC A;  3IN6 A;  1Y12 A;  2IG6 A;  1EJE A;  2FG9 A;  3E4V A;  3K87 A;  4HMX A;  2I51 A;  2ECU A;  1G76 A;  2ECR A;  1Y30 A;  1XHN A;  2IAB A;  2I02 A;  1RZ0 A;  3U35 A;  2D36 A;  3ZOC A;  5JAB A;  2AQ6 A;  4HMU A;  4HMW A;  3H96 A;  2HTI A;  1DNL A;  2IML A;  3EAA A;  1TY9 A;  4QVB A;  3HE1 A;  3ZOE A;  3A20 A;  1WLI A;  1W3O A;  3R5Y A;  5ESC A;  3CB0 A;  3HMZ A;  2HHZ A;  2VPA A;  3FKH A;  4TV4 A;  5CHO A;  3DB0 A;  3PFT A;  4F07 A;  5CHE C;  2FHQ A;  1RFE A;  1RZ1 A;  1WV4 A;  2R6V A;  3FGE A;  1XXO A;  1YOA A;  2RDE A;  4HMV A;  1I0R A;  1CI0 A;  3AMF A;  3TGV A;  3R5Z A;  3R5P A;  2D5M A;  1AXJ A;  2QEA A;  2OU5 A;  2A2J A;  3ZOG A;  3B5M A;  2D38 A;  1G78 A;  2PTF A;  2GUJ A;  2QCK A;  2HQ9 A;  1NRG A;  3GAS A;  3ZOH A;  4W64 A;  4YBN A;  4ZKY A;  3K86 A;  4HX6 A;  3BPK A;  1USF A;  3KYG A;  3R5W A;  2X1J A;  3A6Q A;  1YLN A;  4N7R C;  1JNW A;  3V4H A; 
#chains in the Genus database with same CATH homology
 3VY5 A;  1WLK A;  3DNH A;  3VY2 A;  2RE7 A;  1W9A A;  4L82 A;  2Q9K A;  2OL5 A;  2NR4 A;  3BNK A;  2ED4 A;  1T9M A;  1I0S A;  3EC6 A;  3DMB A;  3R5R A;  4Z85 A;  2FUR A;  2HQ7 A;  4R82 A;  3BA3 A;  2X1K A;  3F7E A;  1W3R A;  1VL7 A;  2HTD A;  3U34 A;  1FLM A;  2ARZ A;  3ZOF A;  3A6R A;  1W3P A;  1G79 A;  1WGB A;  4XJ2 A;  3AWH A;  3RH7 A;  2E83 A;  3R5L A;  2GJG A;  4HMS A;  5BNC A;  3U0I A;  1G77 A;  3ZOD A;  2R0X A;  4Y9I A;  2ASF A;  4XHY A;  4IRA A;  3VYA A;  2D37 A;  3SWJ A;  4YWN A;  4HMT A;  3NFW A;  3U5W A;  1W3Q A;  3K88 A;  3CP3 A;  3HY8 A;  3KYF A;  1USC A;  3IN6 A;  2IG6 A;  1EJE A;  2FG9 A;  3E4V A;  3K87 A;  4HMX A;  2I51 A;  2ECU A;  1G76 A;  2ECR A;  1Y30 A;  1XHN A;  2IAB A;  2I02 A;  1RZ0 A;  3U35 A;  2D36 A;  3ZOC A;  5JAB A;  2AQ6 A;  4HMU A;  4HMW A;  3H96 A;  2HTI A;  1DNL A;  2IML A;  1TY9 A;  4QVB A;  3ZOE A;  3A20 A;  1WLI A;  1W3O A;  3R5Y A;  5ESC A;  3CB0 A;  3HMZ A;  2HHZ A;  2VPA A;  3FKH A;  5CHO A;  3DB0 A;  3PFT A;  4F07 A;  5CHE C;  2FHQ A;  1RFE A;  1RZ1 A;  1WV4 A;  2R6V A;  3FGE A;  1XXO A;  1YOA A;  2RDE A;  4HMV A;  1I0R A;  1CI0 A;  3AMF A;  3TGV A;  3R5Z A;  3R5P A;  2D5M A;  1AXJ A;  2QEA A;  2OU5 A;  2A2J A;  3ZOG A;  3B5M A;  2D38 A;  1G78 A;  2PTF A;  2QCK A;  2HQ9 A;  1NRG A;  3GAS A;  3ZOH A;  4ZKY A;  4YBN A;  3K86 A;  4HX6 A;  3BPK A;  1USF A;  3KYG A;  3R5W A;  2X1J A;  3A6Q A;  1YLN A;  4N7R C;  1JNW A; 
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