3VY2A

N33d mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (39-42)AH2 (52-60)S1 (15-22)S2 (25-32)3H1 (33-35)S4 (43-48)S7 (109-120)AH3 (96-100)TIV3 (48-51)S5 (63-74)TI2 (75-78)TI3 (101-104)TVIII1 (102-105)TI4 (104-107)S3 (37-39)S6 (79-92)AH1 (4-11)Updating...
connected with : NaN
publication title Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule keywords FMN-binding protein
molecule tags Electron transport
source organism Desulfovibrio vulgaris
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vy2A00
3K86A 3GASA 3H96A 2X1KA 3PFTA 2I02A 2D38A 2FURA 2AQ6A 3CB0A 4HMUA 1TY9A 3U35A 2ASFA 2D36A 2ECRA 3TGVA 2QEAA 3R5ZA 2Q9KA 2OU5A 2HHZA 2R0XA 4HMSA 3R5YA 5ESCA 3R5RA 4QVBA 1YLNA 1RZ0A 5CHEC 1USCA 1EJEA 2ED4A 3U5WA 4HMVA 3FKHA 2R6VA 1NRGA 1WGBA 1W3QA 2GJGA 1WV4A 1Y30A 1WLKA 3A6RA 2RE7A 3CP3A 3AMFA 3AWHA 3U34A 3DB0A 4Z85A 3A20A 1DNLA 1G76A 1W3PA 3EC6A 2ECUA 2PTFA 2VPAA 1G78A 1YOAA 1G79A 4YWNA 3R5PA 3ZOEA 3DNHA 3VY2A 2HQ7A 1XXOA 3R5LA 2X1JA 1WLIA 2A2JA 2FHQA 4YBNA 3SWJA 1XHNA 5JABA 3BPKA 5CHOA 1JNWA 2HQ9A 1W9AA 1I0SA 2D5MA 2D37A 1W3RA 4N7RC 1I0RA 2IG6A 5BNCA 3BA3A 3E4VA 2FG9A 1G77A 4XJ2A 3HY8A 4R82A 4F07A 1CI0A 3FGEA 2HTDA 4Y9IA 3ZOGA 1USFA 2IABA 4ZKYA 3VY5A 3NFWA 4IRAA 3A6QA 2NR4A 2IMLA 4XHYA 4HMWA 3BNKA 3U0IA 1RZ1A 3ZOCA 3HMZA 1VL7A 3VYAA 4HMXA 1W3OA 3ZOFA 3ZOHA 2I51A 3KYFA 3KYGA 3RH7A 3K87A 1FLMA 1RFEA 3B5MA 2QCKA 3DMBA 4HX6A 1T9MA 3IN6A 1AXJA 3ZODA 3F7EA 4L82A 2ARZA 3K88A 2E83A 2RDEA 4HMTA 2HTIA 2OL5A 3R5WA
chains in the Genus database with same CATH superfamily
3K86A 3GASA 2P5ZX 3H96A 2X1KA 3PFTA 2I02A 3HE1A 2D38A 2FURA 2AQ6A 3CB0A 4HMUA 1TY9A 3U35A 2ASFA 2D36A 2ECRA 3TGVA 2QEAA 3R5ZA 2Q9KA 2OU5A 2HHZA 2R0XA 4HMSA 3R5YA 5ESCA 3R5RA 4QVBA 1YLNA 2L1TA 1RZ0A 5CHEC 1USCA 1EJEA 2ED4A 3U5WA 4HMVA 3FKHA 2R6VA 1NRGA 1WGBA 1W3QA 2GJGA 1WV4A 2K4QA 1Y30A 1WLKA 3A6RA 2RE7A 3CP3A 3AMFA 3AWHA 3U34A 3DB0A 4Z85A 3A20A 4MTKA 1DNLA 1G76A 1W3PA 3EC6A 2ECUA 2PTFA 2VPAA 1G78A 1YOAA 4TV4A 1G79A 4YWNA 3R5PA 1Y12A 3ZOEA 3DNHA 3VY2A 2HQ7A 1XXOA 3R5LA 2X1JA 1WLIA 2A2JA 2FHQA 4YBNA 3SWJA 1XHNA 5JABA 3BPKA 5CHOA 1JNWA 2HQ9A 1W9AA 1I0SA 2D5MA 2D37A 1W3RA 4UHVA 4N7RC 1I0RA 2IG6A 5BNCA 3BA3A 3E4VA 3V4HA 2FG9A 1G77A 4XJ2A 3HY8A 4R82A 4F07A 1CI0A 3FGEA 2HTDA 4Y9IA 3ZOGA 1USFA 2IABA 4ZKYA 3VY5A 3NFWA 4IRAA 3A6QA 2NR4A 2IMLA 4XHYA 4W64A 4HMWA 3BNKA 3EAAA 3U0IA 1RZ1A 3ZOCA 3HMZA 1VL7A 4HKHA 3VYAA 4HMXA 1W3OA 3ZOFA 3ZOHA 2I51A 3KYFA 3KYGA 3RH7A 3K87A 1FLMA 1RFEA 3B5MA 2QCKA 3DMBA 4HX6A 2GUJA 1T9MA 3IN6A 1AXJA 3ZODA 3F7EA 4L82A 2ARZA 3K88A 2E83A 2RDEA 4HMTA 2HTIA 2OL5A 3R5WA
chains in the Genus database with same CATH topology
3K86A 3GASA 3H96A 2X1KA 3PFTA 2I02A 2D38A 2FURA 2AQ6A 3CB0A 4HMUA 1TY9A 3U35A 2ASFA 2D36A 2ECRA 3TGVA 2QEAA 3R5ZA 2Q9KA 2OU5A 2HHZA 2R0XA 4HMSA 3R5YA 5ESCA 3R5RA 4QVBA 1YLNA 1RZ0A 5CHEC 1USCA 1EJEA 2ED4A 3U5WA 4HMVA 3FKHA 2R6VA 1NRGA 1WGBA 1W3QA 2GJGA 1WV4A 1Y30A 1WLKA 3A6RA 2RE7A 3CP3A 3AMFA 3AWHA 3U34A 3DB0A 4Z85A 3A20A 1DNLA 1G76A 1W3PA 3EC6A 2ECUA 2PTFA 2VPAA 1G78A 1YOAA 1G79A 4YWNA 3R5PA 3ZOEA 3DNHA 3VY2A 2HQ7A 1XXOA 3R5LA 2X1JA 1WLIA 2A2JA 2FHQA 4YBNA 3SWJA 1XHNA 5JABA 3BPKA 5CHOA 1JNWA 2HQ9A 1W9AA 1I0SA 2D5MA 2D37A 1W3RA 4N7RC 1I0RA 2IG6A 5BNCA 3BA3A 3E4VA 2FG9A 1G77A 4XJ2A 3HY8A 4R82A 4F07A 1CI0A 3FGEA 2HTDA 4Y9IA 3ZOGA 1USFA 2IABA 4ZKYA 3VY5A 3NFWA 4IRAA 3A6QA 2NR4A 2IMLA 4XHYA 4HMWA 3BNKA 3U0IA 1RZ1A 3ZOCA 3HMZA 1VL7A 3VYAA 4HMXA 1W3OA 3ZOFA 3ZOHA 2I51A 3KYFA 3KYGA 3RH7A 3K87A 1FLMA 1RFEA 3B5MA 2QCKA 3DMBA 4HX6A 1T9MA 3IN6A 1AXJA 3ZODA 3F7EA 4L82A 2ARZA 3K88A 2E83A 2RDEA 4HMTA 2HTIA 2OL5A 3R5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K86 A;  3GAS A;  3H96 A;  2X1K A;  3PFT A;  2I02 A;  2D38 A;  2FUR A;  2AQ6 A;  3CB0 A;  4HMU A;  1TY9 A;  3U35 A;  2ASF A;  2D36 A;  2ECR A;  3TGV A;  2QEA A;  3R5Z A;  2Q9K A;  2OU5 A;  2HHZ A;  2R0X A;  4HMS A;  3R5Y A;  5ESC A;  3R5R A;  4QVB A;  1YLN A;  1RZ0 A;  5CHE C;  1USC A;  1EJE A;  2ED4 A;  3U5W A;  4HMV A;  3FKH A;  2R6V A;  1NRG A;  1WGB A;  1W3Q A;  2GJG A;  1WV4 A;  1Y30 A;  1WLK A;  3A6R A;  2RE7 A;  3CP3 A;  3AMF A;  3AWH A;  3U34 A;  3DB0 A;  4Z85 A;  3A20 A;  1DNL A;  1G76 A;  1W3P A;  3EC6 A;  2ECU A;  2PTF A;  2VPA A;  1G78 A;  1YOA A;  1G79 A;  4YWN A;  3R5P A;  3ZOE A;  3DNH A;  3VY2 A;  2HQ7 A;  1XXO A;  3R5L A;  2X1J A;  1WLI A;  2A2J A;  2FHQ A;  4YBN A;  3SWJ A;  1XHN A;  5JAB A;  3BPK A;  5CHO A;  1JNW A;  2HQ9 A;  1W9A A;  1I0S A;  2D5M A;  2D37 A;  1W3R A;  4N7R C;  1I0R A;  2IG6 A;  5BNC A;  3BA3 A;  3E4V A;  2FG9 A;  1G77 A;  4XJ2 A;  3HY8 A;  4R82 A;  4F07 A;  1CI0 A;  3FGE A;  2HTD A;  4Y9I A;  3ZOG A;  1USF A;  2IAB A;  4ZKY A;  3VY5 A;  3NFW A;  4IRA A;  3A6Q A;  2NR4 A;  2IML A;  4XHY A;  4HMW A;  3BNK A;  3U0I A;  1RZ1 A;  3ZOC A;  3HMZ A;  1VL7 A;  3VYA A;  4HMX A;  1W3O A;  3ZOF A;  3ZOH A;  2I51 A;  3KYF A;  3KYG A;  3RH7 A;  3K87 A;  1FLM A;  1RFE A;  3B5M A;  2QCK A;  3DMB A;  4HX6 A;  1T9M A;  3IN6 A;  1AXJ A;  3ZOD A;  3F7E A;  4L82 A;  2ARZ A;  3K88 A;  2E83 A;  2RDE A;  4HMT A;  2HTI A;  2OL5 A;  3R5W A; 
#chains in the Genus database with same CATH topology
 3K86 A;  3GAS A;  2P5Z X;  3H96 A;  2X1K A;  3PFT A;  2I02 A;  3HE1 A;  2D38 A;  2FUR A;  2AQ6 A;  3CB0 A;  4HMU A;  1TY9 A;  3U35 A;  2ASF A;  2D36 A;  2ECR A;  3TGV A;  2QEA A;  3R5Z A;  2Q9K A;  2OU5 A;  2HHZ A;  2R0X A;  4HMS A;  3R5Y A;  5ESC A;  3R5R A;  4QVB A;  1YLN A;  2L1T A;  1RZ0 A;  5CHE C;  1USC A;  1EJE A;  2ED4 A;  3U5W A;  4HMV A;  3FKH A;  2R6V A;  1NRG A;  1WGB A;  1W3Q A;  2GJG A;  1WV4 A;  2K4Q A;  1Y30 A;  1WLK A;  3A6R A;  2RE7 A;  3CP3 A;  3AMF A;  3AWH A;  3U34 A;  3DB0 A;  4Z85 A;  3A20 A;  4MTK A;  1DNL A;  1G76 A;  1W3P A;  3EC6 A;  2ECU A;  2PTF A;  2VPA A;  1G78 A;  1YOA A;  4TV4 A;  1G79 A;  4YWN A;  3R5P A;  1Y12 A;  3ZOE A;  3DNH A;  3VY2 A;  2HQ7 A;  1XXO A;  3R5L A;  2X1J A;  1WLI A;  2A2J A;  2FHQ A;  4YBN A;  3SWJ A;  1XHN A;  5JAB A;  3BPK A;  5CHO A;  1JNW A;  2HQ9 A;  1W9A A;  1I0S A;  2D5M A;  2D37 A;  1W3R A;  4UHV A;  4N7R C;  1I0R A;  2IG6 A;  5BNC A;  3BA3 A;  3E4V A;  3V4H A;  2FG9 A;  1G77 A;  4XJ2 A;  3HY8 A;  4R82 A;  4F07 A;  1CI0 A;  3FGE A;  2HTD A;  4Y9I A;  3ZOG A;  1USF A;  2IAB A;  4ZKY A;  3VY5 A;  3NFW A;  4IRA A;  3A6Q A;  2NR4 A;  2IML A;  4XHY A;  4W64 A;  4HMW A;  3BNK A;  3EAA A;  3U0I A;  1RZ1 A;  3ZOC A;  3HMZ A;  1VL7 A;  4HKH A;  3VYA A;  4HMX A;  1W3O A;  3ZOF A;  3ZOH A;  2I51 A;  3KYF A;  3KYG A;  3RH7 A;  3K87 A;  1FLM A;  1RFE A;  3B5M A;  2QCK A;  3DMB A;  4HX6 A;  2GUJ A;  1T9M A;  3IN6 A;  1AXJ A;  3ZOD A;  3F7E A;  4L82 A;  2ARZ A;  3K88 A;  2E83 A;  2RDE A;  4HMT A;  2HTI A;  2OL5 A;  3R5W A; 
#chains in the Genus database with same CATH homology
 3K86 A;  3GAS A;  3H96 A;  2X1K A;  3PFT A;  2I02 A;  2D38 A;  2FUR A;  2AQ6 A;  3CB0 A;  4HMU A;  1TY9 A;  3U35 A;  2ASF A;  2D36 A;  2ECR A;  3TGV A;  2QEA A;  3R5Z A;  2Q9K A;  2OU5 A;  2HHZ A;  2R0X A;  4HMS A;  3R5Y A;  5ESC A;  3R5R A;  4QVB A;  1YLN A;  1RZ0 A;  5CHE C;  1USC A;  1EJE A;  2ED4 A;  3U5W A;  4HMV A;  3FKH A;  2R6V A;  1NRG A;  1WGB A;  1W3Q A;  2GJG A;  1WV4 A;  1Y30 A;  1WLK A;  3A6R A;  2RE7 A;  3CP3 A;  3AMF A;  3AWH A;  3U34 A;  3DB0 A;  4Z85 A;  3A20 A;  1DNL A;  1G76 A;  1W3P A;  3EC6 A;  2ECU A;  2PTF A;  2VPA A;  1G78 A;  1YOA A;  1G79 A;  4YWN A;  3R5P A;  3ZOE A;  3DNH A;  3VY2 A;  2HQ7 A;  1XXO A;  3R5L A;  2X1J A;  1WLI A;  2A2J A;  2FHQ A;  4YBN A;  3SWJ A;  1XHN A;  5JAB A;  3BPK A;  5CHO A;  1JNW A;  2HQ9 A;  1W9A A;  1I0S A;  2D5M A;  2D37 A;  1W3R A;  4N7R C;  1I0R A;  2IG6 A;  5BNC A;  3BA3 A;  3E4V A;  2FG9 A;  1G77 A;  4XJ2 A;  3HY8 A;  4R82 A;  4F07 A;  1CI0 A;  3FGE A;  2HTD A;  4Y9I A;  3ZOG A;  1USF A;  2IAB A;  4ZKY A;  3VY5 A;  3NFW A;  4IRA A;  3A6Q A;  2NR4 A;  2IML A;  4XHY A;  4HMW A;  3BNK A;  3U0I A;  1RZ1 A;  3ZOC A;  3HMZ A;  1VL7 A;  3VYA A;  4HMX A;  1W3O A;  3ZOF A;  3ZOH A;  2I51 A;  3KYF A;  3KYG A;  3RH7 A;  3K87 A;  1FLM A;  1RFE A;  3B5M A;  2QCK A;  3DMB A;  4HX6 A;  1T9M A;  3IN6 A;  1AXJ A;  3ZOD A;  3F7E A;  4L82 A;  2ARZ A;  3K88 A;  2E83 A;  2RDE A;  4HMT A;  2HTI A;  2OL5 A;  3R5W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.