3ZOC | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	176
structure length	176
Chain Sequence	YFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d0376fd6d165fa5d4f7985d/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d0376fd6d165fa5d4f7985d/pdb.gz): 1539 ms

reading 176 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

176 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:175});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations. pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
molecule tags	Fmn-binding protein
source organism	Pyrococcus horikoshii
total genus	40
structure length	176
sequence length	176
ec nomenclature
pdb deposition date	2013-02-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	3zocA01

2ARZA 3BPKA 3AMFA 2RDEA 3K86A 3TGVA 4QVBA 2PTFA 4Y9IA 3HMZA 3R5WA 3ZOGA 3DNHA 3BA3A 4HMUA 2ECUA 3R5YA 1RFEA 3EC6A 2FG9A 2NR4A 3ZOEA 3R5PA 1WLKA 2A2JA 5ESCA 3KYFA 1NRGA 2Q9KA 2FURA 1YLNA 3CP3A 1FLMA 3R5RA 1WV4A 3R5ZA 2IG6A 1YOAA 3PFTA 3E4VA 3F7EA 3HY8A 4XJ2A 3SWJA 4HX6A 3B5MA 4XHYA 3CB0A 1AXJA 5CHEC 4YBNA 3A6RA 1G77A 1JNWA 4YWNA 2X1JA 2E83A 2OU5A 2D37A 4N7RC 3ZOFA 1G78A 1VL7A 3R5LA 3VY5A 3NFWA 2IMLA 1I0RA 3FGEA 3H96A 5CHOA 4L82A 1USFA 1W3PA 2RE7A 3DB0A 3VY2A 4HMWA 3VYAA 2D38A 3AWHA 3ZODA 1Y30A 2HHZA 1DNLA 2AQ6A 3K87A 2ASFA 1XXOA 2OL5A 3BNKA 4IRAA 1USCA 2GJGA 2I02A 3U35A 1CI0A 3RH7A 1XHNA 5BNCA 2IABA 2VPAA 5JABA 1W3QA 3ZOCA 3U34A 1I0SA 2QEAA 3DMBA 3ZOHA 4HMVA 3U5WA 2HQ7A 1W3RA 2ECRA 3U0IA 3KYGA 2HTDA 1G76A 1EJEA 1RZ1A 4F07A 2R6VA 2HQ9A 1G79A 4HMTA 4ZKYA 2ED4A 3FKHA 2HTIA 3A6QA 2D5MA 3IN6A 1RZ0A 1WGBA 1TY9A 2I51A 4R82A 1W3OA 2D36A 1T9MA 4Z85A 1WLIA 3A20A 2X1KA 4HMXA 3K88A 4HMSA 2QCKA 1W9AA 3GASA 2R0XA 2FHQA
chains in the Genus database with same CATH superfamily

3EAAA 2ARZA 3BPKA 3AMFA 2RDEA 3K86A 3TGVA 4QVBA 2PTFA 4Y9IA 3HMZA 3R5WA 3ZOGA 3DNHA 3BA3A 4HMUA 2ECUA 3R5YA 1RFEA 3EC6A 2FG9A 2NR4A 3ZOEA 3R5PA 1WLKA 2A2JA 5ESCA 3KYFA 1NRGA 2Q9KA 2FURA 1YLNA 3CP3A 4UHVA 1FLMA 3R5RA 1WV4A 3R5ZA 2IG6A 1YOAA 3PFTA 3E4VA 3F7EA 3HY8A 4XJ2A 3SWJA 4HX6A 3B5MA 4XHYA 3CB0A 1AXJA 5CHEC 4YBNA 3A6RA 1G77A 1JNWA 4YWNA 2X1JA 2E83A 2OU5A 2D37A 4N7RC 3ZOFA 1G78A 1VL7A 3R5LA 3VY5A 3NFWA 2IMLA 1I0RA 3FGEA 3H96A 5CHOA 4L82A 1USFA 1W3PA 2RE7A 3DB0A 3VY2A 4HMWA 2P5ZX 2K4QA 4W64A 3VYAA 2D38A 3AWHA 3ZODA 2L1TA 1Y30A 1Y12A 2HHZA 1DNLA 2AQ6A 3K87A 2ASFA 1XXOA 2OL5A 3BNKA 4IRAA 4MTKA 1USCA 2GJGA 2I02A 2GUJA 3U35A 1CI0A 3RH7A 1XHNA 5BNCA 2IABA 2VPAA 5JABA 1W3QA 3HE1A 3ZOCA 3U34A 1I0SA 2QEAA 3DMBA 3ZOHA 4HMVA 3U5WA 2HQ7A 1W3RA 2ECRA 3U0IA 3KYGA 2HTDA 1G76A 1EJEA 4HKHA 1RZ1A 4F07A 2R6VA 3V4HA 2HQ9A 1G79A 4HMTA 4ZKYA 2ED4A 3FKHA 2HTIA 3A6QA 2D5MA 3IN6A 1RZ0A 1WGBA 1TY9A 2I51A 4R82A 1W3OA 2D36A 4TV4A 1T9MA 4Z85A 1WLIA 3A20A 2X1KA 4HMXA 3K88A 4HMSA 2QCKA 1W9AA 3GASA 2R0XA 2FHQA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2ARZ A;  3BPK A;  3AMF A;  2RDE A;  3K86 A;  3TGV A;  4QVB A;  2PTF A;  4Y9I A;  3HMZ A;  3R5W A;  3ZOG A;  3DNH A;  3BA3 A;  4HMU A;  2ECU A;  3R5Y A;  1RFE A;  3EC6 A;  2FG9 A;  2NR4 A;  3ZOE A;  3R5P A;  1WLK A;  2A2J A;  5ESC A;  3KYF A;  1NRG A;  2Q9K A;  2FUR A;  1YLN A;  3CP3 A;  1FLM A;  3R5R A;  1WV4 A;  3R5Z A;  2IG6 A;  1YOA A;  3PFT A;  3E4V A;  3F7E A;  3HY8 A;  4XJ2 A;  3SWJ A;  4HX6 A;  3B5M A;  4XHY A;  3CB0 A;  1AXJ A;  5CHE C;  4YBN A;  3A6R A;  1G77 A;  1JNW A;  4YWN A;  2X1J A;  2E83 A;  2OU5 A;  2D37 A;  4N7R C;  3ZOF A;  1G78 A;  1VL7 A;  3R5L A;  3VY5 A;  3NFW A;  2IML A;  1I0R A;  3FGE A;  3H96 A;  5CHO A;  4L82 A;  1USF A;  1W3P A;  2RE7 A;  3DB0 A;  3VY2 A;  4HMW A;  3VYA A;  2D38 A;  3AWH A;  3ZOD A;  1Y30 A;  2HHZ A;  1DNL A;  2AQ6 A;  3K87 A;  2ASF A;  1XXO A;  2OL5 A;  3BNK A;  4IRA A;  1USC A;  2GJG A;  2I02 A;  3U35 A;  1CI0 A;  3RH7 A;  1XHN A;  5BNC A;  2IAB A;  2VPA A;  5JAB A;  1W3Q A;  3ZOC A;  3U34 A;  1I0S A;  2QEA A;  3DMB A;  3ZOH A;  4HMV A;  3U5W A;  2HQ7 A;  1W3R A;  2ECR A;  3U0I A;  3KYG A;  2HTD A;  1G76 A;  1EJE A;  1RZ1 A;  4F07 A;  2R6V A;  2HQ9 A;  1G79 A;  4HMT A;  4ZKY A;  2ED4 A;  3FKH A;  2HTI A;  3A6Q A;  2D5M A;  3IN6 A;  1RZ0 A;  1WGB A;  1TY9 A;  2I51 A;  4R82 A;  1W3O A;  2D36 A;  1T9M A;  4Z85 A;  1WLI A;  3A20 A;  2X1K A;  4HMX A;  3K88 A;  4HMS A;  2QCK A;  1W9A A;  3GAS A;  2R0X A;  2FHQ A; 
#chains in the Genus database with same CATH topology
 3EAA A;  2ARZ A;  3BPK A;  3AMF A;  2RDE A;  3K86 A;  3TGV A;  4QVB A;  2PTF A;  4Y9I A;  3HMZ A;  3R5W A;  3ZOG A;  3DNH A;  3BA3 A;  4HMU A;  2ECU A;  3R5Y A;  1RFE A;  3EC6 A;  2FG9 A;  2NR4 A;  3ZOE A;  3R5P A;  1WLK A;  2A2J A;  5ESC A;  3KYF A;  1NRG A;  2Q9K A;  2FUR A;  1YLN A;  3CP3 A;  4UHV A;  1FLM A;  3R5R A;  1WV4 A;  3R5Z A;  2IG6 A;  1YOA A;  3PFT A;  3E4V A;  3F7E A;  3HY8 A;  4XJ2 A;  3SWJ A;  4HX6 A;  3B5M A;  4XHY A;  3CB0 A;  1AXJ A;  5CHE C;  4YBN A;  3A6R A;  1G77 A;  1JNW A;  4YWN A;  2X1J A;  2E83 A;  2OU5 A;  2D37 A;  4N7R C;  3ZOF A;  1G78 A;  1VL7 A;  3R5L A;  3VY5 A;  3NFW A;  2IML A;  1I0R A;  3FGE A;  3H96 A;  5CHO A;  4L82 A;  1USF A;  1W3P A;  2RE7 A;  3DB0 A;  3VY2 A;  4HMW A;  2P5Z X;  2K4Q A;  4W64 A;  3VYA A;  2D38 A;  3AWH A;  3ZOD A;  2L1T A;  1Y30 A;  1Y12 A;  2HHZ A;  1DNL A;  2AQ6 A;  3K87 A;  2ASF A;  1XXO A;  2OL5 A;  3BNK A;  4IRA A;  4MTK A;  1USC A;  2GJG A;  2I02 A;  2GUJ A;  3U35 A;  1CI0 A;  3RH7 A;  1XHN A;  5BNC A;  2IAB A;  2VPA A;  5JAB A;  1W3Q A;  3HE1 A;  3ZOC A;  3U34 A;  1I0S A;  2QEA A;  3DMB A;  3ZOH A;  4HMV A;  3U5W A;  2HQ7 A;  1W3R A;  2ECR A;  3U0I A;  3KYG A;  2HTD A;  1G76 A;  1EJE A;  4HKH A;  1RZ1 A;  4F07 A;  2R6V A;  3V4H A;  2HQ9 A;  1G79 A;  4HMT A;  4ZKY A;  2ED4 A;  3FKH A;  2HTI A;  3A6Q A;  2D5M A;  3IN6 A;  1RZ0 A;  1WGB A;  1TY9 A;  2I51 A;  4R82 A;  1W3O A;  2D36 A;  4TV4 A;  1T9M A;  4Z85 A;  1WLI A;  3A20 A;  2X1K A;  4HMX A;  3K88 A;  4HMS A;  2QCK A;  1W9A A;  3GAS A;  2R0X A;  2FHQ A; 
#chains in the Genus database with same CATH homology
 2ARZ A;  3BPK A;  3AMF A;  2RDE A;  3K86 A;  3TGV A;  4QVB A;  2PTF A;  4Y9I A;  3HMZ A;  3R5W A;  3ZOG A;  3DNH A;  3BA3 A;  4HMU A;  2ECU A;  3R5Y A;  1RFE A;  3EC6 A;  2FG9 A;  2NR4 A;  3ZOE A;  3R5P A;  1WLK A;  2A2J A;  5ESC A;  3KYF A;  1NRG A;  2Q9K A;  2FUR A;  1YLN A;  3CP3 A;  1FLM A;  3R5R A;  1WV4 A;  3R5Z A;  2IG6 A;  1YOA A;  3PFT A;  3E4V A;  3F7E A;  3HY8 A;  4XJ2 A;  3SWJ A;  4HX6 A;  3B5M A;  4XHY A;  3CB0 A;  1AXJ A;  5CHE C;  4YBN A;  3A6R A;  1G77 A;  1JNW A;  4YWN A;  2X1J A;  2E83 A;  2OU5 A;  2D37 A;  4N7R C;  3ZOF A;  1G78 A;  1VL7 A;  3R5L A;  3VY5 A;  3NFW A;  2IML A;  1I0R A;  3FGE A;  3H96 A;  5CHO A;  4L82 A;  1USF A;  1W3P A;  2RE7 A;  3DB0 A;  3VY2 A;  4HMW A;  3VYA A;  2D38 A;  3AWH A;  3ZOD A;  1Y30 A;  2HHZ A;  1DNL A;  2AQ6 A;  3K87 A;  2ASF A;  1XXO A;  2OL5 A;  3BNK A;  4IRA A;  1USC A;  2GJG A;  2I02 A;  3U35 A;  1CI0 A;  3RH7 A;  1XHN A;  5BNC A;  2IAB A;  2VPA A;  5JAB A;  1W3Q A;  3ZOC A;  3U34 A;  1I0S A;  2QEA A;  3DMB A;  3ZOH A;  4HMV A;  3U5W A;  2HQ7 A;  1W3R A;  2ECR A;  3U0I A;  3KYG A;  2HTD A;  1G76 A;  1EJE A;  1RZ1 A;  4F07 A;  2R6V A;  2HQ9 A;  1G79 A;  4HMT A;  4ZKY A;  2ED4 A;  3FKH A;  2HTI A;  3A6Q A;  2D5M A;  3IN6 A;  1RZ0 A;  1WGB A;  1TY9 A;  2I51 A;  4R82 A;  1W3O A;  2D36 A;  1T9M A;  4Z85 A;  1WLI A;  3A20 A;  2X1K A;  4HMX A;  3K88 A;  4HMS A;  2QCK A;  1W9A A;  3GAS A;  2R0X A;  2FHQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZOCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations