3ZOC | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	176
structure length	176
Chain Sequence	YFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d0376fd6d165fa5d4f7985d/pdb.gz): 1488 ms

reading 176 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

176 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

Adding embedded #jmolscript: select ({0:175});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations. pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
molecule tags	Fmn-binding protein
source organism	Pyrococcus horikoshii
total genus	40
structure length	176
sequence length	176
ec nomenclature
pdb deposition date	2013-02-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	3zocA01

1JNWA 3FGEA 3PFTA 1USCA 2ED4A 5CHEC 4IRAA 2VPAA 1G78A 1I0SA 2IABA 5ESCA 1XHNA 3KYFA 2X1JA 3E4VA 2NR4A 3KYGA 1WV4A 4YWNA 1RZ0A 2OL5A 1WGBA 3TGVA 1USFA 2D38A 4HMXA 4HMVA 1YLNA 2ECUA 3DMBA 1W3QA 1FLMA 2PTFA 4HMSA 4N7RC 3F7EA 4F07A 4L82A 4Z85A 4Y9IA 3ZOFA 2Q9KA 3K86A 3FKHA 3ZOHA 2GJGA 2IG6A 3HY8A 4ZKYA 1AXJA 5JABA 2QCKA 2RE7A 3R5YA 2R0XA 3A20A 3R5ZA 3H96A 3BPKA 3U0IA 2R6VA 4HX6A 1G79A 2FG9A 2IMLA 1TY9A 3RH7A 4XJ2A 1CI0A 2D37A 1WLIA 3U34A 2E83A 4HMUA 2AQ6A 2HQ9A 3AMFA 2HTDA 1DNLA 1NRGA 2I02A 3VY2A 3VY5A 1I0RA 2ARZA 3A6QA 3ZODA 1RFEA 3U35A 3SWJA 1RZ1A 3AWHA 3NFWA 5BNCA 3DNHA 1YOAA 3BA3A 1WLKA 2FHQA 1XXOA 3U5WA 1W3PA 1VL7A 2D36A 2FURA 2RDEA 3A6RA 2I51A 3EC6A 4HMWA 4R82A 2X1KA 3DB0A 3ZOCA 2OU5A 1W9AA 2D5MA 2ECRA 2HHZA 2ASFA 3R5WA 2HTIA 3B5MA 3K87A 3ZOEA 4YBNA 3K88A 3VYAA 3ZOGA 1T9MA 2A2JA 3BNKA 3CB0A 4HMTA 3GASA 3IN6A 1G77A 4QVBA 3R5RA 3HMZA 1Y30A 2HQ7A 4XHYA 1W3RA 3CP3A 2QEAA 5CHOA 3R5PA 3R5LA 1W3OA 1G76A 1EJEA
chains in the Genus database with same CATH superfamily

1Y12A 1JNWA 2L1TA 3FGEA 3PFTA 1USCA 2ED4A 5CHEC 4IRAA 2VPAA 1G78A 1I0SA 2IABA 3HE1A 5ESCA 1XHNA 3EAAA 3KYFA 2X1JA 4UHVA 3E4VA 2NR4A 3KYGA 1WV4A 4YWNA 1RZ0A 2OL5A 4W64A 1WGBA 3TGVA 4TV4A 1USFA 2D38A 4HMXA 4HMVA 1YLNA 2ECUA 3DMBA 1W3QA 1FLMA 2PTFA 4HMSA 4N7RC 4MTKA 3F7EA 4F07A 2P5ZX 4L82A 4Z85A 4Y9IA 3ZOFA 2Q9KA 3K86A 3FKHA 3ZOHA 2GJGA 2IG6A 3HY8A 4ZKYA 1AXJA 5JABA 2QCKA 2RE7A 3R5YA 2R0XA 3A20A 3R5ZA 3H96A 3BPKA 3U0IA 2R6VA 4HX6A 1G79A 2FG9A 2IMLA 1TY9A 3RH7A 4XJ2A 1CI0A 2D37A 1WLIA 3U34A 2E83A 4HMUA 2AQ6A 2HQ9A 3AMFA 2HTDA 1DNLA 1NRGA 2I02A 3VY2A 3VY5A 1I0RA 2ARZA 3A6QA 4HKHA 3ZODA 1RFEA 3U35A 3SWJA 1RZ1A 3AWHA 3NFWA 5BNCA 3DNHA 1YOAA 3BA3A 1WLKA 2FHQA 1XXOA 3U5WA 1W3PA 1VL7A 2D36A 2FURA 2RDEA 3A6RA 2I51A 3EC6A 4HMWA 4R82A 2X1KA 3DB0A 3ZOCA 2OU5A 1W9AA 2D5MA 2ECRA 2HHZA 2ASFA 3R5WA 2HTIA 3B5MA 3K87A 3ZOEA 4YBNA 3K88A 3VYAA 3ZOGA 3V4HA 1T9MA 2A2JA 3BNKA 3CB0A 4HMTA 3GASA 3IN6A 1G77A 4QVBA 3R5RA 3HMZA 1Y30A 2HQ7A 4XHYA 1W3RA 3CP3A 2QEAA 5CHOA 3R5PA 3R5LA 2K4QA 1W3OA 1G76A 1EJEA 2GUJA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1JNW A;  3FGE A;  3PFT A;  1USC A;  2ED4 A;  5CHE C;  4IRA A;  2VPA A;  1G78 A;  1I0S A;  2IAB A;  5ESC A;  1XHN A;  3KYF A;  2X1J A;  3E4V A;  2NR4 A;  3KYG A;  1WV4 A;  4YWN A;  1RZ0 A;  2OL5 A;  1WGB A;  3TGV A;  1USF A;  2D38 A;  4HMX A;  4HMV A;  1YLN A;  2ECU A;  3DMB A;  1W3Q A;  1FLM A;  2PTF A;  4HMS A;  4N7R C;  3F7E A;  4F07 A;  4L82 A;  4Z85 A;  4Y9I A;  3ZOF A;  2Q9K A;  3K86 A;  3FKH A;  3ZOH A;  2GJG A;  2IG6 A;  3HY8 A;  4ZKY A;  1AXJ A;  5JAB A;  2QCK A;  2RE7 A;  3R5Y A;  2R0X A;  3A20 A;  3R5Z A;  3H96 A;  3BPK A;  3U0I A;  2R6V A;  4HX6 A;  1G79 A;  2FG9 A;  2IML A;  1TY9 A;  3RH7 A;  4XJ2 A;  1CI0 A;  2D37 A;  1WLI A;  3U34 A;  2E83 A;  4HMU A;  2AQ6 A;  2HQ9 A;  3AMF A;  2HTD A;  1DNL A;  1NRG A;  2I02 A;  3VY2 A;  3VY5 A;  1I0R A;  2ARZ A;  3A6Q A;  3ZOD A;  1RFE A;  3U35 A;  3SWJ A;  1RZ1 A;  3AWH A;  3NFW A;  5BNC A;  3DNH A;  1YOA A;  3BA3 A;  1WLK A;  2FHQ A;  1XXO A;  3U5W A;  1W3P A;  1VL7 A;  2D36 A;  2FUR A;  2RDE A;  3A6R A;  2I51 A;  3EC6 A;  4HMW A;  4R82 A;  2X1K A;  3DB0 A;  3ZOC A;  2OU5 A;  1W9A A;  2D5M A;  2ECR A;  2HHZ A;  2ASF A;  3R5W A;  2HTI A;  3B5M A;  3K87 A;  3ZOE A;  4YBN A;  3K88 A;  3VYA A;  3ZOG A;  1T9M A;  2A2J A;  3BNK A;  3CB0 A;  4HMT A;  3GAS A;  3IN6 A;  1G77 A;  4QVB A;  3R5R A;  3HMZ A;  1Y30 A;  2HQ7 A;  4XHY A;  1W3R A;  3CP3 A;  2QEA A;  5CHO A;  3R5P A;  3R5L A;  1W3O A;  1G76 A;  1EJE A; 
#chains in the Genus database with same CATH topology
 1Y12 A;  1JNW A;  2L1T A;  3FGE A;  3PFT A;  1USC A;  2ED4 A;  5CHE C;  4IRA A;  2VPA A;  1G78 A;  1I0S A;  2IAB A;  3HE1 A;  5ESC A;  1XHN A;  3EAA A;  3KYF A;  2X1J A;  4UHV A;  3E4V A;  2NR4 A;  3KYG A;  1WV4 A;  4YWN A;  1RZ0 A;  2OL5 A;  4W64 A;  1WGB A;  3TGV A;  4TV4 A;  1USF A;  2D38 A;  4HMX A;  4HMV A;  1YLN A;  2ECU A;  3DMB A;  1W3Q A;  1FLM A;  2PTF A;  4HMS A;  4N7R C;  4MTK A;  3F7E A;  4F07 A;  2P5Z X;  4L82 A;  4Z85 A;  4Y9I A;  3ZOF A;  2Q9K A;  3K86 A;  3FKH A;  3ZOH A;  2GJG A;  2IG6 A;  3HY8 A;  4ZKY A;  1AXJ A;  5JAB A;  2QCK A;  2RE7 A;  3R5Y A;  2R0X A;  3A20 A;  3R5Z A;  3H96 A;  3BPK A;  3U0I A;  2R6V A;  4HX6 A;  1G79 A;  2FG9 A;  2IML A;  1TY9 A;  3RH7 A;  4XJ2 A;  1CI0 A;  2D37 A;  1WLI A;  3U34 A;  2E83 A;  4HMU A;  2AQ6 A;  2HQ9 A;  3AMF A;  2HTD A;  1DNL A;  1NRG A;  2I02 A;  3VY2 A;  3VY5 A;  1I0R A;  2ARZ A;  3A6Q A;  4HKH A;  3ZOD A;  1RFE A;  3U35 A;  3SWJ A;  1RZ1 A;  3AWH A;  3NFW A;  5BNC A;  3DNH A;  1YOA A;  3BA3 A;  1WLK A;  2FHQ A;  1XXO A;  3U5W A;  1W3P A;  1VL7 A;  2D36 A;  2FUR A;  2RDE A;  3A6R A;  2I51 A;  3EC6 A;  4HMW A;  4R82 A;  2X1K A;  3DB0 A;  3ZOC A;  2OU5 A;  1W9A A;  2D5M A;  2ECR A;  2HHZ A;  2ASF A;  3R5W A;  2HTI A;  3B5M A;  3K87 A;  3ZOE A;  4YBN A;  3K88 A;  3VYA A;  3ZOG A;  3V4H A;  1T9M A;  2A2J A;  3BNK A;  3CB0 A;  4HMT A;  3GAS A;  3IN6 A;  1G77 A;  4QVB A;  3R5R A;  3HMZ A;  1Y30 A;  2HQ7 A;  4XHY A;  1W3R A;  3CP3 A;  2QEA A;  5CHO A;  3R5P A;  3R5L A;  2K4Q A;  1W3O A;  1G76 A;  1EJE A;  2GUJ A; 
#chains in the Genus database with same CATH homology
 1JNW A;  3FGE A;  3PFT A;  1USC A;  2ED4 A;  5CHE C;  4IRA A;  2VPA A;  1G78 A;  1I0S A;  2IAB A;  5ESC A;  1XHN A;  3KYF A;  2X1J A;  3E4V A;  2NR4 A;  3KYG A;  1WV4 A;  4YWN A;  1RZ0 A;  2OL5 A;  1WGB A;  3TGV A;  1USF A;  2D38 A;  4HMX A;  4HMV A;  1YLN A;  2ECU A;  3DMB A;  1W3Q A;  1FLM A;  2PTF A;  4HMS A;  4N7R C;  3F7E A;  4F07 A;  4L82 A;  4Z85 A;  4Y9I A;  3ZOF A;  2Q9K A;  3K86 A;  3FKH A;  3ZOH A;  2GJG A;  2IG6 A;  3HY8 A;  4ZKY A;  1AXJ A;  5JAB A;  2QCK A;  2RE7 A;  3R5Y A;  2R0X A;  3A20 A;  3R5Z A;  3H96 A;  3BPK A;  3U0I A;  2R6V A;  4HX6 A;  1G79 A;  2FG9 A;  2IML A;  1TY9 A;  3RH7 A;  4XJ2 A;  1CI0 A;  2D37 A;  1WLI A;  3U34 A;  2E83 A;  4HMU A;  2AQ6 A;  2HQ9 A;  3AMF A;  2HTD A;  1DNL A;  1NRG A;  2I02 A;  3VY2 A;  3VY5 A;  1I0R A;  2ARZ A;  3A6Q A;  3ZOD A;  1RFE A;  3U35 A;  3SWJ A;  1RZ1 A;  3AWH A;  3NFW A;  5BNC A;  3DNH A;  1YOA A;  3BA3 A;  1WLK A;  2FHQ A;  1XXO A;  3U5W A;  1W3P A;  1VL7 A;  2D36 A;  2FUR A;  2RDE A;  3A6R A;  2I51 A;  3EC6 A;  4HMW A;  4R82 A;  2X1K A;  3DB0 A;  3ZOC A;  2OU5 A;  1W9A A;  2D5M A;  2ECR A;  2HHZ A;  2ASF A;  3R5W A;  2HTI A;  3B5M A;  3K87 A;  3ZOE A;  4YBN A;  3K88 A;  3VYA A;  3ZOG A;  1T9M A;  2A2J A;  3BNK A;  3CB0 A;  4HMT A;  3GAS A;  3IN6 A;  1G77 A;  4QVB A;  3R5R A;  3HMZ A;  1Y30 A;  2HQ7 A;  4XHY A;  1W3R A;  3CP3 A;  2QEA A;  5CHO A;  3R5P A;  3R5L A;  1W3O A;  1G76 A;  1EJE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZOCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations