3ZOCA

Crystal structure of fmn-binding protein (np_142786.1) from pyrococcus horikoshii with bound p-hydroxybenzaldehyde
Total Genus 40
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
176
structure length
176
Chain Sequence
YFQGMEGYRLLYPMRTYLIVSGHGEETNVMAADWVTVVSFDPFIVGVAVAPKRTTHKLIKKYGEFVISVPSLDVLRDVWIAGTKKGPSKLKEMSVTLIPSKKVKVPSIEEALANIECRVIDARSYGDHTFFVGEVVGYTYKDYAFEKGKPNLKAKFLAHVSWSEFVTFSEKVHKAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (3-7)S1 (10-11)TIV1 (7-10)EMPTYS2 (13-17)TI5 (157-160)3H3 (68-70)3H2 (20-22)S3 (24-28)AH1 (50-58)S4 (31-35)TI1 (46-49)TVIII1 (35-38)S5 (40-45)S10 (124-136)S6 (60-65)S8 (103-104)AH2 (71-78)S7 (93-94)TI2 (96-99)TI3 (104-107)3H5 (138-140)S9 (109-121)TII'1 (121-124)TI4 (141-144)TIV5 (142-145)S12 (160-162)S11 (154-157)TIV2 (28-31)TIV3 (36-39)TIV4 (107-110)3H4 (83-87)Updating...
connected with : NaN
publication title Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
pubmed doi rcsb
molecule keywords FMN-BINDING PROTEIN
molecule tags Fmn-binding protein
source organism Pyrococcus horikoshii
total genus 40
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2013-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3zocA01
3E4VA 2D38A 3R5ZA 3VY2A 3ZOCA 4ZKYA 3HY8A 2RDEA 4HX6A 3A20A 4N7RC 5CHOA 3VY5A 2FURA 3ZODA 1USCA 1W3QA 1VL7A 3KYFA 1USFA 1XHNA 1XXOA 2ECUA 2OU5A 4XHYA 1W3PA 2E83A 2ED4A 3F7EA 2AQ6A 2HHZA 1I0SA 5BNCA 1RFEA 1CI0A 3GASA 3K86A 2NR4A 3AWHA 3K88A 3DNHA 4HMUA 3R5WA 2X1KA 3A6RA 2PTFA 2HQ7A 1Y30A 2IG6A 2X1JA 4QVBA 3K87A 3U5WA 3ZOHA 3ZOFA 3BNKA 3U35A 3PFTA 3DMBA 1FLMA 1NRGA 3R5PA 2RE7A 3U0IA 4XJ2A 2QCKA 1G79A 4F07A 3IN6A 4HMVA 1EJEA 2D5MA 3NFWA 1TY9A 3KYGA 1W9AA 4YWNA 3EC6A 2ARZA 3DB0A 2GJGA 1RZ1A 2D36A 4HMTA 3FKHA 3TGVA 3ZOEA 4HMXA 3BPKA 2OL5A 4IRAA 1WGBA 1WLIA 1WV4A 3CB0A 1G76A 3R5LA 2R6VA 2ASFA 4HMWA 4Y9IA 5ESCA 2IMLA 2FG9A 1T9MA 3VYAA 3A6QA 3B5MA 3AMFA 3ZOGA 1DNLA 2A2JA 4Z85A 1YOAA 3HMZA 3H96A 2ECRA 2QEAA 1AXJA 1RZ0A 3BA3A 1YLNA 4HMSA 3R5YA 2D37A 2I02A 2FHQA 2IABA 4YBNA 3RH7A 2HTDA 1W3OA 1W3RA 3R5RA 4L82A 1G77A 4R82A 3U34A 2R0XA 3SWJA 2HQ9A 2VPAA 2HTIA 1JNWA 2Q9KA 5JABA 5CHEC 2I51A 3CP3A 1I0RA 1G78A 1WLKA 3FGEA
chains in the Genus database with same CATH superfamily
3E4VA 2D38A 3R5ZA 3VY2A 3ZOCA 4ZKYA 3HY8A 2RDEA 4HX6A 3A20A 3EAAA 4N7RC 2K4QA 5CHOA 3VY5A 2FURA 3ZODA 1USCA 1W3QA 1VL7A 3KYFA 4W64A 1USFA 1XHNA 1XXOA 2ECUA 2OU5A 4XHYA 1W3PA 2E83A 2ED4A 3F7EA 2AQ6A 2HHZA 1I0SA 5BNCA 1RFEA 1CI0A 3GASA 3K86A 2NR4A 3AWHA 3K88A 3DNHA 4HMUA 3R5WA 2X1KA 3A6RA 2PTFA 2HQ7A 1Y30A 2IG6A 2X1JA 4QVBA 3K87A 2L1TA 3U5WA 3ZOHA 3ZOFA 3BNKA 3U35A 3PFTA 3DMBA 1FLMA 1NRGA 3R5PA 2RE7A 3U0IA 4XJ2A 2QCKA 1G79A 4F07A 3IN6A 4HMVA 1EJEA 2D5MA 3NFWA 1TY9A 3KYGA 1W9AA 2GUJA 4YWNA 3EC6A 2ARZA 3DB0A 2GJGA 3V4HA 1RZ1A 2D36A 4TV4A 4HMTA 3FKHA 3TGVA 3ZOEA 4HMXA 3BPKA 2OL5A 4IRAA 3HE1A 1WGBA 1WLIA 1WV4A 3CB0A 1G76A 3R5LA 2R6VA 2ASFA 4HMWA 4Y9IA 5ESCA 2IMLA 2FG9A 1T9MA 3VYAA 3A6QA 3B5MA 3AMFA 3ZOGA 1DNLA 2A2JA 4Z85A 1YOAA 3HMZA 3H96A 2ECRA 2QEAA 1AXJA 1RZ0A 3BA3A 1YLNA 4MTKA 4HMSA 3R5YA 2D37A 2I02A 2FHQA 2IABA 4YBNA 3RH7A 2HTDA 1W3OA 1W3RA 4HKHA 3R5RA 4L82A 1G77A 4R82A 2P5ZX 3U34A 2R0XA 3SWJA 1Y12A 2HQ9A 2VPAA 2HTIA 1JNWA 2Q9KA 5JABA 5CHEC 2I51A 3CP3A 1I0RA 1G78A 4UHVA 1WLKA 3FGEA
chains in the Genus database with same CATH topology
3E4VA 2D38A 3R5ZA 3VY2A 3ZOCA 4ZKYA 3HY8A 2RDEA 4HX6A 3A20A 4N7RC 5CHOA 3VY5A 2FURA 3ZODA 1USCA 1W3QA 1VL7A 3KYFA 1USFA 1XHNA 1XXOA 2ECUA 2OU5A 4XHYA 1W3PA 2E83A 2ED4A 3F7EA 2AQ6A 2HHZA 1I0SA 5BNCA 1RFEA 1CI0A 3GASA 3K86A 2NR4A 3AWHA 3K88A 3DNHA 4HMUA 3R5WA 2X1KA 3A6RA 2PTFA 2HQ7A 1Y30A 2IG6A 2X1JA 4QVBA 3K87A 3U5WA 3ZOHA 3ZOFA 3BNKA 3U35A 3PFTA 3DMBA 1FLMA 1NRGA 3R5PA 2RE7A 3U0IA 4XJ2A 2QCKA 1G79A 4F07A 3IN6A 4HMVA 1EJEA 2D5MA 3NFWA 1TY9A 3KYGA 1W9AA 4YWNA 3EC6A 2ARZA 3DB0A 2GJGA 1RZ1A 2D36A 4HMTA 3FKHA 3TGVA 3ZOEA 4HMXA 3BPKA 2OL5A 4IRAA 1WGBA 1WLIA 1WV4A 3CB0A 1G76A 3R5LA 2R6VA 2ASFA 4HMWA 4Y9IA 5ESCA 2IMLA 2FG9A 1T9MA 3VYAA 3A6QA 3B5MA 3AMFA 3ZOGA 1DNLA 2A2JA 4Z85A 1YOAA 3HMZA 3H96A 2ECRA 2QEAA 1AXJA 1RZ0A 3BA3A 1YLNA 4HMSA 3R5YA 2D37A 2I02A 2FHQA 2IABA 4YBNA 3RH7A 2HTDA 1W3OA 1W3RA 3R5RA 4L82A 1G77A 4R82A 3U34A 2R0XA 3SWJA 2HQ9A 2VPAA 2HTIA 1JNWA 2Q9KA 5JABA 5CHEC 2I51A 3CP3A 1I0RA 1G78A 1WLKA 3FGEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E4V A;  2D38 A;  3R5Z A;  3VY2 A;  3ZOC A;  4ZKY A;  3HY8 A;  2RDE A;  4HX6 A;  3A20 A;  4N7R C;  5CHO A;  3VY5 A;  2FUR A;  3ZOD A;  1USC A;  1W3Q A;  1VL7 A;  3KYF A;  1USF A;  1XHN A;  1XXO A;  2ECU A;  2OU5 A;  4XHY A;  1W3P A;  2E83 A;  2ED4 A;  3F7E A;  2AQ6 A;  2HHZ A;  1I0S A;  5BNC A;  1RFE A;  1CI0 A;  3GAS A;  3K86 A;  2NR4 A;  3AWH A;  3K88 A;  3DNH A;  4HMU A;  3R5W A;  2X1K A;  3A6R A;  2PTF A;  2HQ7 A;  1Y30 A;  2IG6 A;  2X1J A;  4QVB A;  3K87 A;  3U5W A;  3ZOH A;  3ZOF A;  3BNK A;  3U35 A;  3PFT A;  3DMB A;  1FLM A;  1NRG A;  3R5P A;  2RE7 A;  3U0I A;  4XJ2 A;  2QCK A;  1G79 A;  4F07 A;  3IN6 A;  4HMV A;  1EJE A;  2D5M A;  3NFW A;  1TY9 A;  3KYG A;  1W9A A;  4YWN A;  3EC6 A;  2ARZ A;  3DB0 A;  2GJG A;  1RZ1 A;  2D36 A;  4HMT A;  3FKH A;  3TGV A;  3ZOE A;  4HMX A;  3BPK A;  2OL5 A;  4IRA A;  1WGB A;  1WLI A;  1WV4 A;  3CB0 A;  1G76 A;  3R5L A;  2R6V A;  2ASF A;  4HMW A;  4Y9I A;  5ESC A;  2IML A;  2FG9 A;  1T9M A;  3VYA A;  3A6Q A;  3B5M A;  3AMF A;  3ZOG A;  1DNL A;  2A2J A;  4Z85 A;  1YOA A;  3HMZ A;  3H96 A;  2ECR A;  2QEA A;  1AXJ A;  1RZ0 A;  3BA3 A;  1YLN A;  4HMS A;  3R5Y A;  2D37 A;  2I02 A;  2FHQ A;  2IAB A;  4YBN A;  3RH7 A;  2HTD A;  1W3O A;  1W3R A;  3R5R A;  4L82 A;  1G77 A;  4R82 A;  3U34 A;  2R0X A;  3SWJ A;  2HQ9 A;  2VPA A;  2HTI A;  1JNW A;  2Q9K A;  5JAB A;  5CHE C;  2I51 A;  3CP3 A;  1I0R A;  1G78 A;  1WLK A;  3FGE A; 
#chains in the Genus database with same CATH topology
 3E4V A;  2D38 A;  3R5Z A;  3VY2 A;  3ZOC A;  4ZKY A;  3HY8 A;  2RDE A;  4HX6 A;  3A20 A;  3EAA A;  4N7R C;  2K4Q A;  5CHO A;  3VY5 A;  2FUR A;  3ZOD A;  1USC A;  1W3Q A;  1VL7 A;  3KYF A;  4W64 A;  1USF A;  1XHN A;  1XXO A;  2ECU A;  2OU5 A;  4XHY A;  1W3P A;  2E83 A;  2ED4 A;  3F7E A;  2AQ6 A;  2HHZ A;  1I0S A;  5BNC A;  1RFE A;  1CI0 A;  3GAS A;  3K86 A;  2NR4 A;  3AWH A;  3K88 A;  3DNH A;  4HMU A;  3R5W A;  2X1K A;  3A6R A;  2PTF A;  2HQ7 A;  1Y30 A;  2IG6 A;  2X1J A;  4QVB A;  3K87 A;  2L1T A;  3U5W A;  3ZOH A;  3ZOF A;  3BNK A;  3U35 A;  3PFT A;  3DMB A;  1FLM A;  1NRG A;  3R5P A;  2RE7 A;  3U0I A;  4XJ2 A;  2QCK A;  1G79 A;  4F07 A;  3IN6 A;  4HMV A;  1EJE A;  2D5M A;  3NFW A;  1TY9 A;  3KYG A;  1W9A A;  2GUJ A;  4YWN A;  3EC6 A;  2ARZ A;  3DB0 A;  2GJG A;  3V4H A;  1RZ1 A;  2D36 A;  4TV4 A;  4HMT A;  3FKH A;  3TGV A;  3ZOE A;  4HMX A;  3BPK A;  2OL5 A;  4IRA A;  3HE1 A;  1WGB A;  1WLI A;  1WV4 A;  3CB0 A;  1G76 A;  3R5L A;  2R6V A;  2ASF A;  4HMW A;  4Y9I A;  5ESC A;  2IML A;  2FG9 A;  1T9M A;  3VYA A;  3A6Q A;  3B5M A;  3AMF A;  3ZOG A;  1DNL A;  2A2J A;  4Z85 A;  1YOA A;  3HMZ A;  3H96 A;  2ECR A;  2QEA A;  1AXJ A;  1RZ0 A;  3BA3 A;  1YLN A;  4MTK A;  4HMS A;  3R5Y A;  2D37 A;  2I02 A;  2FHQ A;  2IAB A;  4YBN A;  3RH7 A;  2HTD A;  1W3O A;  1W3R A;  4HKH A;  3R5R A;  4L82 A;  1G77 A;  4R82 A;  2P5Z X;  3U34 A;  2R0X A;  3SWJ A;  1Y12 A;  2HQ9 A;  2VPA A;  2HTI A;  1JNW A;  2Q9K A;  5JAB A;  5CHE C;  2I51 A;  3CP3 A;  1I0R A;  1G78 A;  4UHV A;  1WLK A;  3FGE A; 
#chains in the Genus database with same CATH homology
 3E4V A;  2D38 A;  3R5Z A;  3VY2 A;  3ZOC A;  4ZKY A;  3HY8 A;  2RDE A;  4HX6 A;  3A20 A;  4N7R C;  5CHO A;  3VY5 A;  2FUR A;  3ZOD A;  1USC A;  1W3Q A;  1VL7 A;  3KYF A;  1USF A;  1XHN A;  1XXO A;  2ECU A;  2OU5 A;  4XHY A;  1W3P A;  2E83 A;  2ED4 A;  3F7E A;  2AQ6 A;  2HHZ A;  1I0S A;  5BNC A;  1RFE A;  1CI0 A;  3GAS A;  3K86 A;  2NR4 A;  3AWH A;  3K88 A;  3DNH A;  4HMU A;  3R5W A;  2X1K A;  3A6R A;  2PTF A;  2HQ7 A;  1Y30 A;  2IG6 A;  2X1J A;  4QVB A;  3K87 A;  3U5W A;  3ZOH A;  3ZOF A;  3BNK A;  3U35 A;  3PFT A;  3DMB A;  1FLM A;  1NRG A;  3R5P A;  2RE7 A;  3U0I A;  4XJ2 A;  2QCK A;  1G79 A;  4F07 A;  3IN6 A;  4HMV A;  1EJE A;  2D5M A;  3NFW A;  1TY9 A;  3KYG A;  1W9A A;  4YWN A;  3EC6 A;  2ARZ A;  3DB0 A;  2GJG A;  1RZ1 A;  2D36 A;  4HMT A;  3FKH A;  3TGV A;  3ZOE A;  4HMX A;  3BPK A;  2OL5 A;  4IRA A;  1WGB A;  1WLI A;  1WV4 A;  3CB0 A;  1G76 A;  3R5L A;  2R6V A;  2ASF A;  4HMW A;  4Y9I A;  5ESC A;  2IML A;  2FG9 A;  1T9M A;  3VYA A;  3A6Q A;  3B5M A;  3AMF A;  3ZOG A;  1DNL A;  2A2J A;  4Z85 A;  1YOA A;  3HMZ A;  3H96 A;  2ECR A;  2QEA A;  1AXJ A;  1RZ0 A;  3BA3 A;  1YLN A;  4HMS A;  3R5Y A;  2D37 A;  2I02 A;  2FHQ A;  2IAB A;  4YBN A;  3RH7 A;  2HTD A;  1W3O A;  1W3R A;  3R5R A;  4L82 A;  1G77 A;  4R82 A;  3U34 A;  2R0X A;  3SWJ A;  2HQ9 A;  2VPA A;  2HTI A;  1JNW A;  2Q9K A;  5JAB A;  5CHE C;  2I51 A;  3CP3 A;  1I0R A;  1G78 A;  1WLK A;  3FGE A; 
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