3ZOEA

Crystal structure of fmn-binding protein (yp_005476) from thermus thermophilus with bound p-hydroxybenzaldehyde
Total Genus 37
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
178
structure length
175
Chain Sequence
MRSYRAQGPLPGFYHYYPGVPAVVGVRVEERVNFCPAVWNTGLSADPPLFGVSISPKRFTHGLLLKARRFSASFHPFGQKDLVHWLGSHSGREVDKGQAPHFLGHTGVPILEGAYAAYELELLEVHTFGDHDLFVGRVVAVWEEEGLLDRPKPGLALLYYGKGLYGRPAEETFAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (14-17)TIV2 (37-40)EMPTYS3 (40-44)S1 (22-28)TIV1 (27-30)TI5 (104-107)S2 (31-37)TI3 (90-93)AH1 (59-67)3H2 (96-98)S4 (49-54)TVIII2 (44-47)S9 (131-143)TIV3 (45-48)TI2 (55-58)S5 (69-74)S7 (109-111)TIV4 (114-117)TII2 (155-158)3H1 (77-79)TIV6 (149-155)TII1 (111-114)AH2 (80-87)TI'1 (164-167)TI4 (91-94)S6 (101-103)S8 (116-128)TII'2 (128-131)3H3 (145-147)TIV5 (148-154)S11 (167-169)S10 (161-164)Updating...
connected with : NaN
publication title Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
pubmed doi rcsb
molecule keywords FLAVOREDOXIN
molecule tags Fmn-binding protein
source organism Thermus thermophilus
total genus 37
structure length 175
sequence length 178
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3zoeA00
2FURA 2I02A 2Q9KA 1RZ1A 3ZOCA 3FGEA 4QVBA 1WLKA 3BNKA 3R5LA 1G79A 2ECUA 1Y30A 2GJGA 2D37A 3TGVA 1EJEA 3EC6A 3CP3A 1I0SA 3FKHA 3ZOGA 1FLMA 2A2JA 3ZOHA 4R82A 2RDEA 1RFEA 3K88A 3ZOFA 2NR4A 2IABA 4HMVA 3U35A 4HMUA 1W3OA 2QEAA 3U0IA 3B5MA 3SWJA 4L82A 3K86A 3KYFA 1G77A 1WV4A 1VL7A 4Z85A 1USFA 1YLNA 4HX6A 1WGBA 2D36A 3IN6A 4N7RC 1WLIA 1AXJA 2RE7A 4YBNA 1USCA 2X1KA 3DNHA 3H96A 1XXOA 4Y9IA 1W3RA 2HTIA 3HY8A 3NFWA 2D5MA 4XHYA 4HMTA 2E83A 3R5ZA 2HQ7A 3RH7A 1CI0A 4F07A 3VY5A 1T9MA 2OL5A 3ZODA 2PTFA 1YOAA 1I0RA 1TY9A 3E4VA 3R5RA 1G76A 2D38A 2R6VA 3R5WA 2ECRA 2FG9A 3A20A 4HMWA 4YWNA 1W9AA 3HMZA 1DNLA 2OU5A 3BA3A 2IG6A 3R5YA 5CHOA 5BNCA 3GASA 2HTDA 3KYGA 3PFTA 2ASFA 4ZKYA 2I51A 2FHQA 2ARZA 4HMXA 3F7EA 3CB0A 4IRAA 2HQ9A 3DMBA 3VY2A 3BPKA 1JNWA 2VPAA 1W3PA 2AQ6A 1RZ0A 2QCKA 2X1JA 4HMSA 2HHZA 5JABA 3DB0A 1G78A 3AWHA 1W3QA 3VYAA 3U5WA 1NRGA 5ESCA 3K87A 4XJ2A 3AMFA 3A6RA 1XHNA 2R0XA 2ED4A 2IMLA 3U34A 3ZOEA 3R5PA 5CHEC 3A6QA
chains in the Genus database with same CATH superfamily
2FURA 2I02A 2Q9KA 1RZ1A 3ZOCA 3FGEA 4QVBA 1WLKA 3BNKA 3R5LA 1G79A 2ECUA 1Y30A 2GJGA 2D37A 3TGVA 1EJEA 3EC6A 4MTKA 1Y12A 3CP3A 1I0SA 3FKHA 3ZOGA 1FLMA 2A2JA 3ZOHA 4R82A 2RDEA 1RFEA 3K88A 4W64A 3ZOFA 2NR4A 2IABA 4HMVA 3U35A 4HMUA 1W3OA 2QEAA 3U0IA 3B5MA 3SWJA 4L82A 3K86A 3KYFA 1G77A 3EAAA 1WV4A 1VL7A 4Z85A 1USFA 1YLNA 4HX6A 1WGBA 2D36A 3IN6A 4N7RC 1WLIA 1AXJA 2L1TA 4TV4A 2RE7A 4YBNA 1USCA 2X1KA 3DNHA 3H96A 1XXOA 4Y9IA 1W3RA 2HTIA 3HY8A 3HE1A 3NFWA 2D5MA 2GUJA 4XHYA 4HMTA 2E83A 3R5ZA 2HQ7A 3RH7A 1CI0A 4F07A 3VY5A 1T9MA 2OL5A 3ZODA 2PTFA 3V4HA 1YOAA 1I0RA 1TY9A 3E4VA 3R5RA 1G76A 2D38A 2R6VA 3R5WA 2ECRA 2FG9A 3A20A 4HMWA 4YWNA 1W9AA 3HMZA 1DNLA 2OU5A 3BA3A 2IG6A 3R5YA 5CHOA 5BNCA 3GASA 2HTDA 3KYGA 3PFTA 2ASFA 2P5ZX 2K4QA 4ZKYA 2I51A 2FHQA 2ARZA 4HMXA 4HKHA 3F7EA 3CB0A 4IRAA 2HQ9A 3DMBA 3VY2A 3BPKA 1JNWA 2VPAA 1W3PA 2AQ6A 1RZ0A 2QCKA 2X1JA 4HMSA 2HHZA 5JABA 3DB0A 1G78A 3AWHA 1W3QA 3VYAA 3U5WA 1NRGA 5ESCA 3K87A 4XJ2A 3AMFA 3A6RA 1XHNA 2R0XA 4UHVA 2ED4A 2IMLA 3U34A 3ZOEA 3R5PA 5CHEC 3A6QA
chains in the Genus database with same CATH topology
2FURA 2I02A 2Q9KA 1RZ1A 3ZOCA 3FGEA 4QVBA 1WLKA 3BNKA 3R5LA 1G79A 2ECUA 1Y30A 2GJGA 2D37A 3TGVA 1EJEA 3EC6A 3CP3A 1I0SA 3FKHA 3ZOGA 1FLMA 2A2JA 3ZOHA 4R82A 2RDEA 1RFEA 3K88A 3ZOFA 2NR4A 2IABA 4HMVA 3U35A 4HMUA 1W3OA 2QEAA 3U0IA 3B5MA 3SWJA 4L82A 3K86A 3KYFA 1G77A 1WV4A 1VL7A 4Z85A 1USFA 1YLNA 4HX6A 1WGBA 2D36A 3IN6A 4N7RC 1WLIA 1AXJA 2RE7A 4YBNA 1USCA 2X1KA 3DNHA 3H96A 1XXOA 4Y9IA 1W3RA 2HTIA 3HY8A 3NFWA 2D5MA 4XHYA 4HMTA 2E83A 3R5ZA 2HQ7A 3RH7A 1CI0A 4F07A 3VY5A 1T9MA 2OL5A 3ZODA 2PTFA 1YOAA 1I0RA 1TY9A 3E4VA 3R5RA 1G76A 2D38A 2R6VA 3R5WA 2ECRA 2FG9A 3A20A 4HMWA 4YWNA 1W9AA 3HMZA 1DNLA 2OU5A 3BA3A 2IG6A 3R5YA 5CHOA 5BNCA 3GASA 2HTDA 3KYGA 3PFTA 2ASFA 4ZKYA 2I51A 2FHQA 2ARZA 4HMXA 3F7EA 3CB0A 4IRAA 2HQ9A 3DMBA 3VY2A 3BPKA 1JNWA 2VPAA 1W3PA 2AQ6A 1RZ0A 2QCKA 2X1JA 4HMSA 2HHZA 5JABA 3DB0A 1G78A 3AWHA 1W3QA 3VYAA 3U5WA 1NRGA 5ESCA 3K87A 4XJ2A 3AMFA 3A6RA 1XHNA 2R0XA 2ED4A 2IMLA 3U34A 3ZOEA 3R5PA 5CHEC 3A6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUR A;  2I02 A;  2Q9K A;  1RZ1 A;  3ZOC A;  3FGE A;  4QVB A;  1WLK A;  3BNK A;  3R5L A;  1G79 A;  2ECU A;  1Y30 A;  2GJG A;  2D37 A;  3TGV A;  1EJE A;  3EC6 A;  3CP3 A;  1I0S A;  3FKH A;  3ZOG A;  1FLM A;  2A2J A;  3ZOH A;  4R82 A;  2RDE A;  1RFE A;  3K88 A;  3ZOF A;  2NR4 A;  2IAB A;  4HMV A;  3U35 A;  4HMU A;  1W3O A;  2QEA A;  3U0I A;  3B5M A;  3SWJ A;  4L82 A;  3K86 A;  3KYF A;  1G77 A;  1WV4 A;  1VL7 A;  4Z85 A;  1USF A;  1YLN A;  4HX6 A;  1WGB A;  2D36 A;  3IN6 A;  4N7R C;  1WLI A;  1AXJ A;  2RE7 A;  4YBN A;  1USC A;  2X1K A;  3DNH A;  3H96 A;  1XXO A;  4Y9I A;  1W3R A;  2HTI A;  3HY8 A;  3NFW A;  2D5M A;  4XHY A;  4HMT A;  2E83 A;  3R5Z A;  2HQ7 A;  3RH7 A;  1CI0 A;  4F07 A;  3VY5 A;  1T9M A;  2OL5 A;  3ZOD A;  2PTF A;  1YOA A;  1I0R A;  1TY9 A;  3E4V A;  3R5R A;  1G76 A;  2D38 A;  2R6V A;  3R5W A;  2ECR A;  2FG9 A;  3A20 A;  4HMW A;  4YWN A;  1W9A A;  3HMZ A;  1DNL A;  2OU5 A;  3BA3 A;  2IG6 A;  3R5Y A;  5CHO A;  5BNC A;  3GAS A;  2HTD A;  3KYG A;  3PFT A;  2ASF A;  4ZKY A;  2I51 A;  2FHQ A;  2ARZ A;  4HMX A;  3F7E A;  3CB0 A;  4IRA A;  2HQ9 A;  3DMB A;  3VY2 A;  3BPK A;  1JNW A;  2VPA A;  1W3P A;  2AQ6 A;  1RZ0 A;  2QCK A;  2X1J A;  4HMS A;  2HHZ A;  5JAB A;  3DB0 A;  1G78 A;  3AWH A;  1W3Q A;  3VYA A;  3U5W A;  1NRG A;  5ESC A;  3K87 A;  4XJ2 A;  3AMF A;  3A6R A;  1XHN A;  2R0X A;  2ED4 A;  2IML A;  3U34 A;  3ZOE A;  3R5P A;  5CHE C;  3A6Q A; 
#chains in the Genus database with same CATH topology
 2FUR A;  2I02 A;  2Q9K A;  1RZ1 A;  3ZOC A;  3FGE A;  4QVB A;  1WLK A;  3BNK A;  3R5L A;  1G79 A;  2ECU A;  1Y30 A;  2GJG A;  2D37 A;  3TGV A;  1EJE A;  3EC6 A;  4MTK A;  1Y12 A;  3CP3 A;  1I0S A;  3FKH A;  3ZOG A;  1FLM A;  2A2J A;  3ZOH A;  4R82 A;  2RDE A;  1RFE A;  3K88 A;  4W64 A;  3ZOF A;  2NR4 A;  2IAB A;  4HMV A;  3U35 A;  4HMU A;  1W3O A;  2QEA A;  3U0I A;  3B5M A;  3SWJ A;  4L82 A;  3K86 A;  3KYF A;  1G77 A;  3EAA A;  1WV4 A;  1VL7 A;  4Z85 A;  1USF A;  1YLN A;  4HX6 A;  1WGB A;  2D36 A;  3IN6 A;  4N7R C;  1WLI A;  1AXJ A;  2L1T A;  4TV4 A;  2RE7 A;  4YBN A;  1USC A;  2X1K A;  3DNH A;  3H96 A;  1XXO A;  4Y9I A;  1W3R A;  2HTI A;  3HY8 A;  3HE1 A;  3NFW A;  2D5M A;  2GUJ A;  4XHY A;  4HMT A;  2E83 A;  3R5Z A;  2HQ7 A;  3RH7 A;  1CI0 A;  4F07 A;  3VY5 A;  1T9M A;  2OL5 A;  3ZOD A;  2PTF A;  3V4H A;  1YOA A;  1I0R A;  1TY9 A;  3E4V A;  3R5R A;  1G76 A;  2D38 A;  2R6V A;  3R5W A;  2ECR A;  2FG9 A;  3A20 A;  4HMW A;  4YWN A;  1W9A A;  3HMZ A;  1DNL A;  2OU5 A;  3BA3 A;  2IG6 A;  3R5Y A;  5CHO A;  5BNC A;  3GAS A;  2HTD A;  3KYG A;  3PFT A;  2ASF A;  2P5Z X;  2K4Q A;  4ZKY A;  2I51 A;  2FHQ A;  2ARZ A;  4HMX A;  4HKH A;  3F7E A;  3CB0 A;  4IRA A;  2HQ9 A;  3DMB A;  3VY2 A;  3BPK A;  1JNW A;  2VPA A;  1W3P A;  2AQ6 A;  1RZ0 A;  2QCK A;  2X1J A;  4HMS A;  2HHZ A;  5JAB A;  3DB0 A;  1G78 A;  3AWH A;  1W3Q A;  3VYA A;  3U5W A;  1NRG A;  5ESC A;  3K87 A;  4XJ2 A;  3AMF A;  3A6R A;  1XHN A;  2R0X A;  4UHV A;  2ED4 A;  2IML A;  3U34 A;  3ZOE A;  3R5P A;  5CHE C;  3A6Q A; 
#chains in the Genus database with same CATH homology
 2FUR A;  2I02 A;  2Q9K A;  1RZ1 A;  3ZOC A;  3FGE A;  4QVB A;  1WLK A;  3BNK A;  3R5L A;  1G79 A;  2ECU A;  1Y30 A;  2GJG A;  2D37 A;  3TGV A;  1EJE A;  3EC6 A;  3CP3 A;  1I0S A;  3FKH A;  3ZOG A;  1FLM A;  2A2J A;  3ZOH A;  4R82 A;  2RDE A;  1RFE A;  3K88 A;  3ZOF A;  2NR4 A;  2IAB A;  4HMV A;  3U35 A;  4HMU A;  1W3O A;  2QEA A;  3U0I A;  3B5M A;  3SWJ A;  4L82 A;  3K86 A;  3KYF A;  1G77 A;  1WV4 A;  1VL7 A;  4Z85 A;  1USF A;  1YLN A;  4HX6 A;  1WGB A;  2D36 A;  3IN6 A;  4N7R C;  1WLI A;  1AXJ A;  2RE7 A;  4YBN A;  1USC A;  2X1K A;  3DNH A;  3H96 A;  1XXO A;  4Y9I A;  1W3R A;  2HTI A;  3HY8 A;  3NFW A;  2D5M A;  4XHY A;  4HMT A;  2E83 A;  3R5Z A;  2HQ7 A;  3RH7 A;  1CI0 A;  4F07 A;  3VY5 A;  1T9M A;  2OL5 A;  3ZOD A;  2PTF A;  1YOA A;  1I0R A;  1TY9 A;  3E4V A;  3R5R A;  1G76 A;  2D38 A;  2R6V A;  3R5W A;  2ECR A;  2FG9 A;  3A20 A;  4HMW A;  4YWN A;  1W9A A;  3HMZ A;  1DNL A;  2OU5 A;  3BA3 A;  2IG6 A;  3R5Y A;  5CHO A;  5BNC A;  3GAS A;  2HTD A;  3KYG A;  3PFT A;  2ASF A;  4ZKY A;  2I51 A;  2FHQ A;  2ARZ A;  4HMX A;  3F7E A;  3CB0 A;  4IRA A;  2HQ9 A;  3DMB A;  3VY2 A;  3BPK A;  1JNW A;  2VPA A;  1W3P A;  2AQ6 A;  1RZ0 A;  2QCK A;  2X1J A;  4HMS A;  2HHZ A;  5JAB A;  3DB0 A;  1G78 A;  3AWH A;  1W3Q A;  3VYA A;  3U5W A;  1NRG A;  5ESC A;  3K87 A;  4XJ2 A;  3AMF A;  3A6R A;  1XHN A;  2R0X A;  2ED4 A;  2IML A;  3U34 A;  3ZOE A;  3R5P A;  5CHE C;  3A6Q A; 
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