4F07 | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	156
structure length	152
Chain Sequence	TNFRQAVALFATGIAVLSAETEEGDVHGMTVNSFTSISLDPPTVMVSLKSGRMHELLTQGGRFGVSLLGESQKVFSAFFSKRAMDTPPPAFTIQAGLPTLQGAMAWFECEVESTVQVHDHTLFIARVSACGTPEPQPLLFFASRYHGNPLPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure and Mechanism of Styrene Monooxygenase Reductase: New Insight into the FAD-Transfer Reaction. pubmed doi rcsb
molecule keywords	Styrene monooxygenase component 2
molecule tags	Oxidoreductase
source organism	Pseudomonas
total genus	28
structure length	152
sequence length	156
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date	2012-05-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	4f07A00

3PFTA 1G77A 3DB0A 5CHEC 3R5RA 3HMZA 1EJEA 3R5WA 1W3OA 1NRGA 2D5MA 1T9MA 3CB0A 2R6VA 2HTIA 2ECRA 2RDEA 4YBNA 2HTDA 3A20A 4XHYA 3AWHA 3R5LA 4XJ2A 2I51A 1RZ1A 3A6QA 2QCKA 1YLNA 3H96A 2A2JA 3E4VA 3VY5A 5BNCA 2OL5A 3ZOHA 4Y9IA 1YOAA 5ESCA 1RFEA 3ZOGA 1FLMA 3K87A 4HMXA 2IABA 4HX6A 1XHNA 4F07A 3GASA 3KYFA 3ZOCA 3DNHA 1WV4A 3ZOEA 2PTFA 1G79A 3AMFA 4L82A 1W9AA 2ED4A 4R82A 3U34A 2IMLA 2X1JA 4HMSA 1WLIA 1WLKA 3FKHA 3R5YA 1Y30A 2D37A 3DMBA 2E83A 1W3RA 4Z85A 4HMWA 3U35A 1I0SA 3ZODA 2FURA 4YWNA 2ECUA 2HQ9A 3A6RA 3HY8A 4IRAA 1VL7A 2FHQA 2HHZA 2NR4A 1AXJA 1USFA 3BPKA 3K86A 2QEAA 1G76A 2Q9KA 3R5PA 3CP3A 3EC6A 3B5MA 3F7EA 1DNLA 2I02A 3RH7A 1G78A 2AQ6A 3SWJA 3U0IA 1TY9A 2VPAA 3VY2A 1WGBA 4N7RC 2IG6A 3ZOFA 4QVBA 3U5WA 2FG9A 2ASFA 2D38A 1XXOA 5JABA 1RZ0A 2GJGA 3BA3A 3TGVA 3BNKA 2D36A 1W3QA 1I0RA 3VYAA 3R5ZA 3KYGA 2X1KA 1JNWA 4HMVA 5CHOA 2R0XA 4HMUA 1USCA 4ZKYA 3NFWA 1CI0A 1W3PA 3IN6A 2OU5A 4HMTA 2HQ7A 2RE7A 3FGEA 2ARZA 3K88A
chains in the Genus database with same CATH superfamily

3PFTA 1G77A 3DB0A 4W64A 5CHEC 3R5RA 3HMZA 1EJEA 3R5WA 1W3OA 1NRGA 2D5MA 1T9MA 3CB0A 2R6VA 2HTIA 2ECRA 2K4QA 2RDEA 4YBNA 2HTDA 3A20A 4XHYA 3AWHA 3R5LA 4XJ2A 2I51A 1RZ1A 3A6QA 2QCKA 1YLNA 3H96A 2A2JA 3E4VA 3VY5A 5BNCA 4HKHA 2OL5A 3ZOHA 4Y9IA 1YOAA 5ESCA 1RFEA 3ZOGA 1FLMA 3K87A 4HMXA 2IABA 4HX6A 1XHNA 2P5ZX 4F07A 3GASA 3KYFA 3ZOCA 3DNHA 1WV4A 3V4HA 3ZOEA 2PTFA 1G79A 3AMFA 4L82A 1W9AA 2ED4A 4R82A 3U34A 2IMLA 2X1JA 4HMSA 1WLIA 1WLKA 3FKHA 3R5YA 1Y30A 2D37A 3DMBA 2E83A 1W3RA 4Z85A 4HMWA 3U35A 1I0SA 3ZODA 3HE1A 2FURA 4YWNA 2ECUA 2HQ9A 3A6RA 3HY8A 4IRAA 1VL7A 2FHQA 2HHZA 2NR4A 1AXJA 1USFA 3BPKA 2GUJA 3K86A 2QEAA 4UHVA 1G76A 2Q9KA 3R5PA 3CP3A 3EC6A 3B5MA 3F7EA 1DNLA 2I02A 3RH7A 1G78A 2AQ6A 4TV4A 3SWJA 3U0IA 1TY9A 2VPAA 3VY2A 1WGBA 4N7RC 1Y12A 2IG6A 3ZOFA 4QVBA 3U5WA 2FG9A 2ASFA 2D38A 1XXOA 5JABA 1RZ0A 2GJGA 3BA3A 3TGVA 3BNKA 2D36A 1W3QA 1I0RA 3VYAA 3R5ZA 2L1TA 3KYGA 3EAAA 2X1KA 1JNWA 4HMVA 4MTKA 5CHOA 2R0XA 4HMUA 1USCA 4ZKYA 3NFWA 1CI0A 1W3PA 3IN6A 2OU5A 4HMTA 2HQ7A 2RE7A 3FGEA 2ARZA 3K88A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3PFT A;  1G77 A;  3DB0 A;  5CHE C;  3R5R A;  3HMZ A;  1EJE A;  3R5W A;  1W3O A;  1NRG A;  2D5M A;  1T9M A;  3CB0 A;  2R6V A;  2HTI A;  2ECR A;  2RDE A;  4YBN A;  2HTD A;  3A20 A;  4XHY A;  3AWH A;  3R5L A;  4XJ2 A;  2I51 A;  1RZ1 A;  3A6Q A;  2QCK A;  1YLN A;  3H96 A;  2A2J A;  3E4V A;  3VY5 A;  5BNC A;  2OL5 A;  3ZOH A;  4Y9I A;  1YOA A;  5ESC A;  1RFE A;  3ZOG A;  1FLM A;  3K87 A;  4HMX A;  2IAB A;  4HX6 A;  1XHN A;  4F07 A;  3GAS A;  3KYF A;  3ZOC A;  3DNH A;  1WV4 A;  3ZOE A;  2PTF A;  1G79 A;  3AMF A;  4L82 A;  1W9A A;  2ED4 A;  4R82 A;  3U34 A;  2IML A;  2X1J A;  4HMS A;  1WLI A;  1WLK A;  3FKH A;  3R5Y A;  1Y30 A;  2D37 A;  3DMB A;  2E83 A;  1W3R A;  4Z85 A;  4HMW A;  3U35 A;  1I0S A;  3ZOD A;  2FUR A;  4YWN A;  2ECU A;  2HQ9 A;  3A6R A;  3HY8 A;  4IRA A;  1VL7 A;  2FHQ A;  2HHZ A;  2NR4 A;  1AXJ A;  1USF A;  3BPK A;  3K86 A;  2QEA A;  1G76 A;  2Q9K A;  3R5P A;  3CP3 A;  3EC6 A;  3B5M A;  3F7E A;  1DNL A;  2I02 A;  3RH7 A;  1G78 A;  2AQ6 A;  3SWJ A;  3U0I A;  1TY9 A;  2VPA A;  3VY2 A;  1WGB A;  4N7R C;  2IG6 A;  3ZOF A;  4QVB A;  3U5W A;  2FG9 A;  2ASF A;  2D38 A;  1XXO A;  5JAB A;  1RZ0 A;  2GJG A;  3BA3 A;  3TGV A;  3BNK A;  2D36 A;  1W3Q A;  1I0R A;  3VYA A;  3R5Z A;  3KYG A;  2X1K A;  1JNW A;  4HMV A;  5CHO A;  2R0X A;  4HMU A;  1USC A;  4ZKY A;  3NFW A;  1CI0 A;  1W3P A;  3IN6 A;  2OU5 A;  4HMT A;  2HQ7 A;  2RE7 A;  3FGE A;  2ARZ A;  3K88 A; 
#chains in the Genus database with same CATH topology
 3PFT A;  1G77 A;  3DB0 A;  4W64 A;  5CHE C;  3R5R A;  3HMZ A;  1EJE A;  3R5W A;  1W3O A;  1NRG A;  2D5M A;  1T9M A;  3CB0 A;  2R6V A;  2HTI A;  2ECR A;  2K4Q A;  2RDE A;  4YBN A;  2HTD A;  3A20 A;  4XHY A;  3AWH A;  3R5L A;  4XJ2 A;  2I51 A;  1RZ1 A;  3A6Q A;  2QCK A;  1YLN A;  3H96 A;  2A2J A;  3E4V A;  3VY5 A;  5BNC A;  4HKH A;  2OL5 A;  3ZOH A;  4Y9I A;  1YOA A;  5ESC A;  1RFE A;  3ZOG A;  1FLM A;  3K87 A;  4HMX A;  2IAB A;  4HX6 A;  1XHN A;  2P5Z X;  4F07 A;  3GAS A;  3KYF A;  3ZOC A;  3DNH A;  1WV4 A;  3V4H A;  3ZOE A;  2PTF A;  1G79 A;  3AMF A;  4L82 A;  1W9A A;  2ED4 A;  4R82 A;  3U34 A;  2IML A;  2X1J A;  4HMS A;  1WLI A;  1WLK A;  3FKH A;  3R5Y A;  1Y30 A;  2D37 A;  3DMB A;  2E83 A;  1W3R A;  4Z85 A;  4HMW A;  3U35 A;  1I0S A;  3ZOD A;  3HE1 A;  2FUR A;  4YWN A;  2ECU A;  2HQ9 A;  3A6R A;  3HY8 A;  4IRA A;  1VL7 A;  2FHQ A;  2HHZ A;  2NR4 A;  1AXJ A;  1USF A;  3BPK A;  2GUJ A;  3K86 A;  2QEA A;  4UHV A;  1G76 A;  2Q9K A;  3R5P A;  3CP3 A;  3EC6 A;  3B5M A;  3F7E A;  1DNL A;  2I02 A;  3RH7 A;  1G78 A;  2AQ6 A;  4TV4 A;  3SWJ A;  3U0I A;  1TY9 A;  2VPA A;  3VY2 A;  1WGB A;  4N7R C;  1Y12 A;  2IG6 A;  3ZOF A;  4QVB A;  3U5W A;  2FG9 A;  2ASF A;  2D38 A;  1XXO A;  5JAB A;  1RZ0 A;  2GJG A;  3BA3 A;  3TGV A;  3BNK A;  2D36 A;  1W3Q A;  1I0R A;  3VYA A;  3R5Z A;  2L1T A;  3KYG A;  3EAA A;  2X1K A;  1JNW A;  4HMV A;  4MTK A;  5CHO A;  2R0X A;  4HMU A;  1USC A;  4ZKY A;  3NFW A;  1CI0 A;  1W3P A;  3IN6 A;  2OU5 A;  4HMT A;  2HQ7 A;  2RE7 A;  3FGE A;  2ARZ A;  3K88 A; 
#chains in the Genus database with same CATH homology
 3PFT A;  1G77 A;  3DB0 A;  5CHE C;  3R5R A;  3HMZ A;  1EJE A;  3R5W A;  1W3O A;  1NRG A;  2D5M A;  1T9M A;  3CB0 A;  2R6V A;  2HTI A;  2ECR A;  2RDE A;  4YBN A;  2HTD A;  3A20 A;  4XHY A;  3AWH A;  3R5L A;  4XJ2 A;  2I51 A;  1RZ1 A;  3A6Q A;  2QCK A;  1YLN A;  3H96 A;  2A2J A;  3E4V A;  3VY5 A;  5BNC A;  2OL5 A;  3ZOH A;  4Y9I A;  1YOA A;  5ESC A;  1RFE A;  3ZOG A;  1FLM A;  3K87 A;  4HMX A;  2IAB A;  4HX6 A;  1XHN A;  4F07 A;  3GAS A;  3KYF A;  3ZOC A;  3DNH A;  1WV4 A;  3ZOE A;  2PTF A;  1G79 A;  3AMF A;  4L82 A;  1W9A A;  2ED4 A;  4R82 A;  3U34 A;  2IML A;  2X1J A;  4HMS A;  1WLI A;  1WLK A;  3FKH A;  3R5Y A;  1Y30 A;  2D37 A;  3DMB A;  2E83 A;  1W3R A;  4Z85 A;  4HMW A;  3U35 A;  1I0S A;  3ZOD A;  2FUR A;  4YWN A;  2ECU A;  2HQ9 A;  3A6R A;  3HY8 A;  4IRA A;  1VL7 A;  2FHQ A;  2HHZ A;  2NR4 A;  1AXJ A;  1USF A;  3BPK A;  3K86 A;  2QEA A;  1G76 A;  2Q9K A;  3R5P A;  3CP3 A;  3EC6 A;  3B5M A;  3F7E A;  1DNL A;  2I02 A;  3RH7 A;  1G78 A;  2AQ6 A;  3SWJ A;  3U0I A;  1TY9 A;  2VPA A;  3VY2 A;  1WGB A;  4N7R C;  2IG6 A;  3ZOF A;  4QVB A;  3U5W A;  2FG9 A;  2ASF A;  2D38 A;  1XXO A;  5JAB A;  1RZ0 A;  2GJG A;  3BA3 A;  3TGV A;  3BNK A;  2D36 A;  1W3Q A;  1I0R A;  3VYA A;  3R5Z A;  3KYG A;  2X1K A;  1JNW A;  4HMV A;  5CHO A;  2R0X A;  4HMU A;  1USC A;  4ZKY A;  3NFW A;  1CI0 A;  1W3P A;  3IN6 A;  2OU5 A;  4HMT A;  2HQ7 A;  2RE7 A;  3FGE A;  2ARZ A;  3K88 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4F07A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations