4F07 | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	156
structure length	152
Chain Sequence	TNFRQAVALFATGIAVLSAETEEGDVHGMTVNSFTSISLDPPTVMVSLKSGRMHELLTQGGRFGVSLLGESQKVFSAFFSKRAMDTPPPAFTIQAGLPTLQGAMAWFECEVESTVQVHDHTLFIARVSACGTPEPQPLLFFASRYHGNPLPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d03bfcdfda24889999821cf/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5d03bfcdfda24889999821cf/pdb.gz): 1940 ms

reading 152 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

152 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:151});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure and Mechanism of Styrene Monooxygenase Reductase: New Insight into the FAD-Transfer Reaction. pubmed doi rcsb
molecule keywords	Styrene monooxygenase component 2
molecule tags	Oxidoreductase
source organism	Pseudomonas
total genus	28
structure length	152
sequence length	156
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date	2012-05-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	4f07A00

2ED4A 2VPAA 4XHYA 2HQ7A 3NFWA 2FG9A 4HX6A 1TY9A 4HMTA 3U34A 3BA3A 3R5LA 3BNKA 4L82A 4R82A 2QEAA 4HMVA 2D38A 1RFEA 5ESCA 1W3QA 3F7EA 2OL5A 1FLMA 3HMZA 1YOAA 4ZKYA 3ZOCA 1I0SA 1T9MA 3RH7A 5BNCA 1W3PA 2HQ9A 1G77A 3R5ZA 3PFTA 1WLIA 3DNHA 3SWJA 2PTFA 1USFA 2QCKA 3AWHA 2R0XA 3DB0A 1W3RA 3E4VA 3U0IA 1NRGA 3DMBA 2IABA 3K87A 3CB0A 1USCA 3H96A 3R5YA 2I51A 1G76A 3A6RA 2ECRA 3AMFA 3U5WA 2ARZA 3ZOGA 1W3OA 3ZOFA 3TGVA 3HY8A 1WLKA 5CHOA 2GJGA 3R5WA 3ZOEA 2IG6A 1RZ0A 3K88A 1I0RA 2D37A 3R5PA 3BPKA 3FKHA 2D5MA 3GASA 3VYAA 2X1KA 1YLNA 5JABA 2ASFA 3R5RA 1EJEA 2A2JA 4HMSA 4F07A 2X1JA 1G79A 3VY2A 3U35A 3CP3A 3KYGA 2D36A 3A20A 4XJ2A 2HTIA 2E83A 2FURA 2RDEA 1CI0A 1Y30A 3A6QA 3K86A 4Y9IA 4YBNA 1G78A 4YWNA 3B5MA 5CHEC 1RZ1A 3IN6A 1W9AA 1VL7A 4HMUA 2Q9KA 2R6VA 4N7RC 4QVBA 1JNWA 4Z85A 3ZOHA 4IRAA 1XHNA 3KYFA 2RE7A 1DNLA 2NR4A 1WV4A 2I02A 2HHZA 2OU5A 4HMXA 4HMWA 2ECUA 2HTDA 3EC6A 3FGEA 1XXOA 3ZODA 2AQ6A 1AXJA 2FHQA 3VY5A 2IMLA 1WGBA
chains in the Genus database with same CATH superfamily

2ED4A 2P5ZX 2VPAA 2HQ7A 3NFWA 2FG9A 4HX6A 4XHYA 1TY9A 4HMTA 3U34A 3BA3A 3R5LA 4TV4A 3BNKA 4L82A 4R82A 2QEAA 4HMVA 2D38A 1RFEA 5ESCA 1W3QA 3F7EA 4UHVA 2OL5A 1FLMA 3HMZA 1YOAA 4ZKYA 3ZOCA 1I0SA 1T9MA 3RH7A 5BNCA 1W3PA 2HQ9A 1G77A 3VY5A 3R5ZA 3PFTA 1WLIA 3DNHA 3SWJA 2K4QA 2PTFA 1USFA 2QCKA 3AWHA 2R0XA 3DB0A 3V4HA 1W3RA 3E4VA 3U0IA 1NRGA 3DMBA 2IABA 3K87A 3CB0A 1USCA 3H96A 3R5YA 2I51A 1G76A 3A6RA 2ECRA 3AMFA 3U5WA 2ARZA 3ZOGA 1W3OA 3ZOFA 3TGVA 3HY8A 1WLKA 5CHOA 2GJGA 3R5WA 3ZOEA 2IG6A 1RZ0A 3K88A 1I0RA 2D37A 3R5PA 3BPKA 3FKHA 2D5MA 3GASA 2L1TA 3VYAA 2X1KA 3HE1A 1YLNA 5JABA 2GUJA 2ASFA 3R5RA 1EJEA 2A2JA 3EAAA 4HMSA 4F07A 2X1JA 1G79A 3VY2A 3U35A 3CP3A 3KYGA 2D36A 3A20A 4XJ2A 2HTIA 1Y12A 2E83A 2FURA 2RDEA 1CI0A 1Y30A 3A6QA 3K86A 4HKHA 4Y9IA 1G78A 4YBNA 4YWNA 3B5MA 5CHEC 1RZ1A 3IN6A 1W9AA 1VL7A 4HMUA 2Q9KA 2R6VA 4N7RC 4QVBA 1JNWA 4Z85A 3ZOHA 4IRAA 1XHNA 3KYFA 2RE7A 1DNLA 2NR4A 1WV4A 2I02A 2HHZA 2OU5A 4HMXA 4HMWA 4W64A 2ECUA 2HTDA 3EC6A 3FGEA 1XXOA 3ZODA 2AQ6A 1AXJA 2FHQA 4MTKA 2IMLA 1WGBA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2ED4 A;  2VPA A;  4XHY A;  2HQ7 A;  3NFW A;  2FG9 A;  4HX6 A;  1TY9 A;  4HMT A;  3U34 A;  3BA3 A;  3R5L A;  3BNK A;  4L82 A;  4R82 A;  2QEA A;  4HMV A;  2D38 A;  1RFE A;  5ESC A;  1W3Q A;  3F7E A;  2OL5 A;  1FLM A;  3HMZ A;  1YOA A;  4ZKY A;  3ZOC A;  1I0S A;  1T9M A;  3RH7 A;  5BNC A;  1W3P A;  2HQ9 A;  1G77 A;  3R5Z A;  3PFT A;  1WLI A;  3DNH A;  3SWJ A;  2PTF A;  1USF A;  2QCK A;  3AWH A;  2R0X A;  3DB0 A;  1W3R A;  3E4V A;  3U0I A;  1NRG A;  3DMB A;  2IAB A;  3K87 A;  3CB0 A;  1USC A;  3H96 A;  3R5Y A;  2I51 A;  1G76 A;  3A6R A;  2ECR A;  3AMF A;  3U5W A;  2ARZ A;  3ZOG A;  1W3O A;  3ZOF A;  3TGV A;  3HY8 A;  1WLK A;  5CHO A;  2GJG A;  3R5W A;  3ZOE A;  2IG6 A;  1RZ0 A;  3K88 A;  1I0R A;  2D37 A;  3R5P A;  3BPK A;  3FKH A;  2D5M A;  3GAS A;  3VYA A;  2X1K A;  1YLN A;  5JAB A;  2ASF A;  3R5R A;  1EJE A;  2A2J A;  4HMS A;  4F07 A;  2X1J A;  1G79 A;  3VY2 A;  3U35 A;  3CP3 A;  3KYG A;  2D36 A;  3A20 A;  4XJ2 A;  2HTI A;  2E83 A;  2FUR A;  2RDE A;  1CI0 A;  1Y30 A;  3A6Q A;  3K86 A;  4Y9I A;  4YBN A;  1G78 A;  4YWN A;  3B5M A;  5CHE C;  1RZ1 A;  3IN6 A;  1W9A A;  1VL7 A;  4HMU A;  2Q9K A;  2R6V A;  4N7R C;  4QVB A;  1JNW A;  4Z85 A;  3ZOH A;  4IRA A;  1XHN A;  3KYF A;  2RE7 A;  1DNL A;  2NR4 A;  1WV4 A;  2I02 A;  2HHZ A;  2OU5 A;  4HMX A;  4HMW A;  2ECU A;  2HTD A;  3EC6 A;  3FGE A;  1XXO A;  3ZOD A;  2AQ6 A;  1AXJ A;  2FHQ A;  3VY5 A;  2IML A;  1WGB A; 
#chains in the Genus database with same CATH topology
 2ED4 A;  2P5Z X;  2VPA A;  2HQ7 A;  3NFW A;  2FG9 A;  4HX6 A;  4XHY A;  1TY9 A;  4HMT A;  3U34 A;  3BA3 A;  3R5L A;  4TV4 A;  3BNK A;  4L82 A;  4R82 A;  2QEA A;  4HMV A;  2D38 A;  1RFE A;  5ESC A;  1W3Q A;  3F7E A;  4UHV A;  2OL5 A;  1FLM A;  3HMZ A;  1YOA A;  4ZKY A;  3ZOC A;  1I0S A;  1T9M A;  3RH7 A;  5BNC A;  1W3P A;  2HQ9 A;  1G77 A;  3VY5 A;  3R5Z A;  3PFT A;  1WLI A;  3DNH A;  3SWJ A;  2K4Q A;  2PTF A;  1USF A;  2QCK A;  3AWH A;  2R0X A;  3DB0 A;  3V4H A;  1W3R A;  3E4V A;  3U0I A;  1NRG A;  3DMB A;  2IAB A;  3K87 A;  3CB0 A;  1USC A;  3H96 A;  3R5Y A;  2I51 A;  1G76 A;  3A6R A;  2ECR A;  3AMF A;  3U5W A;  2ARZ A;  3ZOG A;  1W3O A;  3ZOF A;  3TGV A;  3HY8 A;  1WLK A;  5CHO A;  2GJG A;  3R5W A;  3ZOE A;  2IG6 A;  1RZ0 A;  3K88 A;  1I0R A;  2D37 A;  3R5P A;  3BPK A;  3FKH A;  2D5M A;  3GAS A;  2L1T A;  3VYA A;  2X1K A;  3HE1 A;  1YLN A;  5JAB A;  2GUJ A;  2ASF A;  3R5R A;  1EJE A;  2A2J A;  3EAA A;  4HMS A;  4F07 A;  2X1J A;  1G79 A;  3VY2 A;  3U35 A;  3CP3 A;  3KYG A;  2D36 A;  3A20 A;  4XJ2 A;  2HTI A;  1Y12 A;  2E83 A;  2FUR A;  2RDE A;  1CI0 A;  1Y30 A;  3A6Q A;  3K86 A;  4HKH A;  4Y9I A;  1G78 A;  4YBN A;  4YWN A;  3B5M A;  5CHE C;  1RZ1 A;  3IN6 A;  1W9A A;  1VL7 A;  4HMU A;  2Q9K A;  2R6V A;  4N7R C;  4QVB A;  1JNW A;  4Z85 A;  3ZOH A;  4IRA A;  1XHN A;  3KYF A;  2RE7 A;  1DNL A;  2NR4 A;  1WV4 A;  2I02 A;  2HHZ A;  2OU5 A;  4HMX A;  4HMW A;  4W64 A;  2ECU A;  2HTD A;  3EC6 A;  3FGE A;  1XXO A;  3ZOD A;  2AQ6 A;  1AXJ A;  2FHQ A;  4MTK A;  2IML A;  1WGB A; 
#chains in the Genus database with same CATH homology
 2ED4 A;  2VPA A;  4XHY A;  2HQ7 A;  3NFW A;  2FG9 A;  4HX6 A;  1TY9 A;  4HMT A;  3U34 A;  3BA3 A;  3R5L A;  3BNK A;  4L82 A;  4R82 A;  2QEA A;  4HMV A;  2D38 A;  1RFE A;  5ESC A;  1W3Q A;  3F7E A;  2OL5 A;  1FLM A;  3HMZ A;  1YOA A;  4ZKY A;  3ZOC A;  1I0S A;  1T9M A;  3RH7 A;  5BNC A;  1W3P A;  2HQ9 A;  1G77 A;  3R5Z A;  3PFT A;  1WLI A;  3DNH A;  3SWJ A;  2PTF A;  1USF A;  2QCK A;  3AWH A;  2R0X A;  3DB0 A;  1W3R A;  3E4V A;  3U0I A;  1NRG A;  3DMB A;  2IAB A;  3K87 A;  3CB0 A;  1USC A;  3H96 A;  3R5Y A;  2I51 A;  1G76 A;  3A6R A;  2ECR A;  3AMF A;  3U5W A;  2ARZ A;  3ZOG A;  1W3O A;  3ZOF A;  3TGV A;  3HY8 A;  1WLK A;  5CHO A;  2GJG A;  3R5W A;  3ZOE A;  2IG6 A;  1RZ0 A;  3K88 A;  1I0R A;  2D37 A;  3R5P A;  3BPK A;  3FKH A;  2D5M A;  3GAS A;  3VYA A;  2X1K A;  1YLN A;  5JAB A;  2ASF A;  3R5R A;  1EJE A;  2A2J A;  4HMS A;  4F07 A;  2X1J A;  1G79 A;  3VY2 A;  3U35 A;  3CP3 A;  3KYG A;  2D36 A;  3A20 A;  4XJ2 A;  2HTI A;  2E83 A;  2FUR A;  2RDE A;  1CI0 A;  1Y30 A;  3A6Q A;  3K86 A;  4Y9I A;  4YBN A;  1G78 A;  4YWN A;  3B5M A;  5CHE C;  1RZ1 A;  3IN6 A;  1W9A A;  1VL7 A;  4HMU A;  2Q9K A;  2R6V A;  4N7R C;  4QVB A;  1JNW A;  4Z85 A;  3ZOH A;  4IRA A;  1XHN A;  3KYF A;  2RE7 A;  1DNL A;  2NR4 A;  1WV4 A;  2I02 A;  2HHZ A;  2OU5 A;  4HMX A;  4HMW A;  2ECU A;  2HTD A;  3EC6 A;  3FGE A;  1XXO A;  3ZOD A;  2AQ6 A;  1AXJ A;  2FHQ A;  3VY5 A;  2IML A;  1WGB A;

4J3SA 4J3TA 4J3UA 4J3VA 4J3WA 4J3XA 4J7CI 7YPUA 7YPVA
similar chains in the Genus database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the Genus database (40% sequence similarity)
4J3S A; 4J3T A; 4J3U A; 4J3V A; 4J3W A; 4J3X A; 4J7C I; 7YPU A; 7YPV A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)

4F07A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations