4HMS | Genus

Total Genus 54

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	202
structure length	202
Chain Sequence	GTLDAPFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSDTGWNVRRLQP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis pubmed doi rcsb
molecule keywords	Phenazine biosynthesis protein phzG
molecule tags	Oxidoreductase
source organism	Pseudomonas fluorescens
total genus	54
structure length	202
sequence length	202
chains with identical sequence	B
ec nomenclature	ec 1.4.-.-:
pdb deposition date	2012-10-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	4hmsA00

2GJGA 2AQ6A 3R5YA 2HQ7A 4Z85A 2A2JA 5CHOA 1WLIA 3DNHA 3VY5A 3U35A 4YWNA 2HHZA 4IRAA 2VPAA 2E83A 3B5MA 2RDEA 2QEAA 1WLKA 1DNLA 3ZOEA 3F7EA 1G79A 2OL5A 1JNWA 4HMVA 1G76A 2PTFA 3KYGA 2Q9KA 3R5RA 2HQ9A 2ECRA 1W3OA 3R5PA 1CI0A 2NR4A 2D36A 1EJEA 2FHQA 3R5ZA 2R6VA 5CHEC 1WGBA 1NRGA 4HMXA 4HX6A 3ZOFA 4ZKYA 3ZOCA 3ZOGA 3EC6A 3K88A 2I02A 3AMFA 1RFEA 1W9AA 4HMSA 2R0XA 2FG9A 3FGEA 3GASA 4QVBA 4N7RC 3HMZA 1RZ0A 1WV4A 3R5WA 3K86A 1RZ1A 2X1JA 2OU5A 3AWHA 2IMLA 1G77A 4L82A 4F07A 2ARZA 2D38A 1T9MA 3CB0A 1W3QA 4HMUA 1Y30A 2IG6A 3BA3A 3DMBA 3U5WA 1I0SA 4YBNA 3NFWA 3U0IA 4HMWA 1W3RA 2RE7A 3VYAA 1USCA 3IN6A 2D37A 4XJ2A 1TY9A 3K87A 3CP3A 2I51A 3RH7A 3R5LA 5BNCA 4R82A 3TGVA 1YLNA 1USFA 1G78A 3KYFA 3PFTA 3A6RA 3U34A 2D5MA 2FURA 3A20A 1AXJA 1XXOA 3DB0A 5ESCA 2IABA 1YOAA 2X1KA 2ED4A 3BNKA 3HY8A 4HMTA 1VL7A 2ASFA 1XHNA 3FKHA 2HTIA 1W3PA 2HTDA 3H96A 4Y9IA 3ZOHA 3SWJA 3BPKA 3E4VA 3A6QA 4XHYA 2ECUA 3ZODA 3VY2A 2QCKA 1FLMA 1I0RA 5JABA
chains in the Genus database with same CATH superfamily

2GJGA 2AQ6A 3R5YA 2HQ7A 4Z85A 2A2JA 5CHOA 1WLIA 3DNHA 3VY5A 3U35A 4YWNA 2HHZA 4IRAA 2VPAA 2E83A 3B5MA 2RDEA 2QEAA 1WLKA 1DNLA 3ZOEA 3F7EA 1G79A 2OL5A 1JNWA 4HMVA 1G76A 2PTFA 3KYGA 2Q9KA 3R5RA 2HQ9A 2ECRA 1W3OA 3R5PA 1CI0A 2NR4A 2D36A 1EJEA 2FHQA 2GUJA 3R5ZA 2R6VA 5CHEC 4HKHA 1WGBA 1NRGA 4HMXA 4HX6A 3ZOFA 4ZKYA 2P5ZX 2K4QA 3ZOGA 3EC6A 3ZOCA 3K88A 2I02A 3AMFA 1RFEA 1W9AA 4HMSA 2R0XA 2FG9A 3FGEA 3GASA 4QVBA 4N7RC 4W64A 4UHVA 3HMZA 1RZ0A 1WV4A 3R5WA 3K86A 1RZ1A 2X1JA 2OU5A 3AWHA 2IMLA 1G77A 4L82A 4F07A 2ARZA 2D38A 1T9MA 3CB0A 1W3QA 1Y12A 4HMUA 1Y30A 2IG6A 3BA3A 3DMBA 3U5WA 1I0SA 4MTKA 4YBNA 3NFWA 3U0IA 4HMWA 1W3RA 2RE7A 3VYAA 1USCA 3IN6A 2D37A 4XJ2A 1TY9A 3K87A 3CP3A 2I51A 3RH7A 3R5LA 5BNCA 4R82A 3TGVA 1YLNA 1USFA 1G78A 3KYFA 3PFTA 3A6RA 3U34A 2D5MA 2FURA 3A20A 1AXJA 1XXOA 3DB0A 5ESCA 2IABA 1YOAA 2X1KA 2ED4A 3BNKA 3HY8A 2L1TA 4HMTA 1VL7A 2ASFA 3EAAA 1XHNA 3FKHA 2HTIA 1W3PA 2HTDA 3V4HA 3H96A 4Y9IA 3ZOHA 3SWJA 3BPKA 4TV4A 3E4VA 3A6QA 4XHYA 2ECUA 3ZODA 3VY2A 3HE1A 2QCKA 1FLMA 1I0RA 5JABA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2GJG A;  2AQ6 A;  3R5Y A;  2HQ7 A;  4Z85 A;  2A2J A;  5CHO A;  1WLI A;  3DNH A;  3VY5 A;  3U35 A;  4YWN A;  2HHZ A;  4IRA A;  2VPA A;  2E83 A;  3B5M A;  2RDE A;  2QEA A;  1WLK A;  1DNL A;  3ZOE A;  3F7E A;  1G79 A;  2OL5 A;  1JNW A;  4HMV A;  1G76 A;  2PTF A;  3KYG A;  2Q9K A;  3R5R A;  2HQ9 A;  2ECR A;  1W3O A;  3R5P A;  1CI0 A;  2NR4 A;  2D36 A;  1EJE A;  2FHQ A;  3R5Z A;  2R6V A;  5CHE C;  1WGB A;  1NRG A;  4HMX A;  4HX6 A;  3ZOF A;  4ZKY A;  3ZOC A;  3ZOG A;  3EC6 A;  3K88 A;  2I02 A;  3AMF A;  1RFE A;  1W9A A;  4HMS A;  2R0X A;  2FG9 A;  3FGE A;  3GAS A;  4QVB A;  4N7R C;  3HMZ A;  1RZ0 A;  1WV4 A;  3R5W A;  3K86 A;  1RZ1 A;  2X1J A;  2OU5 A;  3AWH A;  2IML A;  1G77 A;  4L82 A;  4F07 A;  2ARZ A;  2D38 A;  1T9M A;  3CB0 A;  1W3Q A;  4HMU A;  1Y30 A;  2IG6 A;  3BA3 A;  3DMB A;  3U5W A;  1I0S A;  4YBN A;  3NFW A;  3U0I A;  4HMW A;  1W3R A;  2RE7 A;  3VYA A;  1USC A;  3IN6 A;  2D37 A;  4XJ2 A;  1TY9 A;  3K87 A;  3CP3 A;  2I51 A;  3RH7 A;  3R5L A;  5BNC A;  4R82 A;  3TGV A;  1YLN A;  1USF A;  1G78 A;  3KYF A;  3PFT A;  3A6R A;  3U34 A;  2D5M A;  2FUR A;  3A20 A;  1AXJ A;  1XXO A;  3DB0 A;  5ESC A;  2IAB A;  1YOA A;  2X1K A;  2ED4 A;  3BNK A;  3HY8 A;  4HMT A;  1VL7 A;  2ASF A;  1XHN A;  3FKH A;  2HTI A;  1W3P A;  2HTD A;  3H96 A;  4Y9I A;  3ZOH A;  3SWJ A;  3BPK A;  3E4V A;  3A6Q A;  4XHY A;  2ECU A;  3ZOD A;  3VY2 A;  2QCK A;  1FLM A;  1I0R A;  5JAB A; 
#chains in the Genus database with same CATH topology
 2GJG A;  2AQ6 A;  3R5Y A;  2HQ7 A;  4Z85 A;  2A2J A;  5CHO A;  1WLI A;  3DNH A;  3VY5 A;  3U35 A;  4YWN A;  2HHZ A;  4IRA A;  2VPA A;  2E83 A;  3B5M A;  2RDE A;  2QEA A;  1WLK A;  1DNL A;  3ZOE A;  3F7E A;  1G79 A;  2OL5 A;  1JNW A;  4HMV A;  1G76 A;  2PTF A;  3KYG A;  2Q9K A;  3R5R A;  2HQ9 A;  2ECR A;  1W3O A;  3R5P A;  1CI0 A;  2NR4 A;  2D36 A;  1EJE A;  2FHQ A;  2GUJ A;  3R5Z A;  2R6V A;  5CHE C;  4HKH A;  1WGB A;  1NRG A;  4HMX A;  4HX6 A;  3ZOF A;  4ZKY A;  2P5Z X;  2K4Q A;  3ZOG A;  3EC6 A;  3ZOC A;  3K88 A;  2I02 A;  3AMF A;  1RFE A;  1W9A A;  4HMS A;  2R0X A;  2FG9 A;  3FGE A;  3GAS A;  4QVB A;  4N7R C;  4W64 A;  4UHV A;  3HMZ A;  1RZ0 A;  1WV4 A;  3R5W A;  3K86 A;  1RZ1 A;  2X1J A;  2OU5 A;  3AWH A;  2IML A;  1G77 A;  4L82 A;  4F07 A;  2ARZ A;  2D38 A;  1T9M A;  3CB0 A;  1W3Q A;  1Y12 A;  4HMU A;  1Y30 A;  2IG6 A;  3BA3 A;  3DMB A;  3U5W A;  1I0S A;  4MTK A;  4YBN A;  3NFW A;  3U0I A;  4HMW A;  1W3R A;  2RE7 A;  3VYA A;  1USC A;  3IN6 A;  2D37 A;  4XJ2 A;  1TY9 A;  3K87 A;  3CP3 A;  2I51 A;  3RH7 A;  3R5L A;  5BNC A;  4R82 A;  3TGV A;  1YLN A;  1USF A;  1G78 A;  3KYF A;  3PFT A;  3A6R A;  3U34 A;  2D5M A;  2FUR A;  3A20 A;  1AXJ A;  1XXO A;  3DB0 A;  5ESC A;  2IAB A;  1YOA A;  2X1K A;  2ED4 A;  3BNK A;  3HY8 A;  2L1T A;  4HMT A;  1VL7 A;  2ASF A;  3EAA A;  1XHN A;  3FKH A;  2HTI A;  1W3P A;  2HTD A;  3V4H A;  3H96 A;  4Y9I A;  3ZOH A;  3SWJ A;  3BPK A;  4TV4 A;  3E4V A;  3A6Q A;  4XHY A;  2ECU A;  3ZOD A;  3VY2 A;  3HE1 A;  2QCK A;  1FLM A;  1I0R A;  5JAB A; 
#chains in the Genus database with same CATH homology
 2GJG A;  2AQ6 A;  3R5Y A;  2HQ7 A;  4Z85 A;  2A2J A;  5CHO A;  1WLI A;  3DNH A;  3VY5 A;  3U35 A;  4YWN A;  2HHZ A;  4IRA A;  2VPA A;  2E83 A;  3B5M A;  2RDE A;  2QEA A;  1WLK A;  1DNL A;  3ZOE A;  3F7E A;  1G79 A;  2OL5 A;  1JNW A;  4HMV A;  1G76 A;  2PTF A;  3KYG A;  2Q9K A;  3R5R A;  2HQ9 A;  2ECR A;  1W3O A;  3R5P A;  1CI0 A;  2NR4 A;  2D36 A;  1EJE A;  2FHQ A;  3R5Z A;  2R6V A;  5CHE C;  1WGB A;  1NRG A;  4HMX A;  4HX6 A;  3ZOF A;  4ZKY A;  3ZOC A;  3ZOG A;  3EC6 A;  3K88 A;  2I02 A;  3AMF A;  1RFE A;  1W9A A;  4HMS A;  2R0X A;  2FG9 A;  3FGE A;  3GAS A;  4QVB A;  4N7R C;  3HMZ A;  1RZ0 A;  1WV4 A;  3R5W A;  3K86 A;  1RZ1 A;  2X1J A;  2OU5 A;  3AWH A;  2IML A;  1G77 A;  4L82 A;  4F07 A;  2ARZ A;  2D38 A;  1T9M A;  3CB0 A;  1W3Q A;  4HMU A;  1Y30 A;  2IG6 A;  3BA3 A;  3DMB A;  3U5W A;  1I0S A;  4YBN A;  3NFW A;  3U0I A;  4HMW A;  1W3R A;  2RE7 A;  3VYA A;  1USC A;  3IN6 A;  2D37 A;  4XJ2 A;  1TY9 A;  3K87 A;  3CP3 A;  2I51 A;  3RH7 A;  3R5L A;  5BNC A;  4R82 A;  3TGV A;  1YLN A;  1USF A;  1G78 A;  3KYF A;  3PFT A;  3A6R A;  3U34 A;  2D5M A;  2FUR A;  3A20 A;  1AXJ A;  1XXO A;  3DB0 A;  5ESC A;  2IAB A;  1YOA A;  2X1K A;  2ED4 A;  3BNK A;  3HY8 A;  4HMT A;  1VL7 A;  2ASF A;  1XHN A;  3FKH A;  2HTI A;  1W3P A;  2HTD A;  3H96 A;  4Y9I A;  3ZOH A;  3SWJ A;  3BPK A;  3E4V A;  3A6Q A;  4XHY A;  2ECU A;  3ZOD A;  3VY2 A;  2QCK A;  1FLM A;  1I0R A;  5JAB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4HMSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations