4HMSA

Crystal structure of phzg from pseudomonas fluorescens 2-79 in complex with a second fmn in the substrate binding site
Total Genus 54
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
202
structure length
202
Chain Sequence
GTLDAPFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSDTGWNVRRLQP
2040608010012014016018020020015010050
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (37-51)TVIII1 (34-37)TI1 (55-58)EMPTYTI3 (81-84)S1 (58-64)S5 (104-111)AH6 (159-171)S2 (70-76)S3 (79-81)S4 (84-90)AH3 (94-101)3H1 (112-114)TVIII2 (156-159)S6 (116-126)AH4 (129-138)3H2 (141-143)TI4 (90-93)AH1 (28-32)TI2 (65-68)AH5 (144-149)TII1 (151-154)S7 (182-199)TI5 (179-182)TIV2 (198-201)TIV1 (53-56)Updating...
connected with : NaN
publication title Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis
pubmed doi rcsb
molecule keywords Phenazine biosynthesis protein phzG
molecule tags Oxidoreductase
source organism Pseudomonas fluorescens
total genus 54
structure length 202
sequence length 202
chains with identical sequence B
ec nomenclature ec 1.4.-.-:
pdb deposition date 2012-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4hmsA00
1Y30A 2HQ7A 1RZ1A 4XHYA 4HMUA 1RFEA 3R5WA 2D37A 2D36A 3R5ZA 4YWNA 2VPAA 1I0RA 3FGEA 2I02A 1G79A 3K86A 2HTDA 3U0IA 1WLKA 3ZOFA 3VYAA 3U35A 3DMBA 1DNLA 3HMZA 3U5WA 1USFA 3ZODA 4R82A 1WLIA 2E83A 2X1JA 1T9MA 2ECUA 2IABA 3DNHA 4QVBA 2D5MA 1W9AA 3A6RA 3BA3A 2A2JA 1I0SA 2HHZA 3AWHA 1VL7A 3A6QA 3H96A 4XJ2A 2FURA 4Z85A 3TGVA 5BNCA 3A20A 3BNKA 2HTIA 1AXJA 5CHEC 3CP3A 1G78A 4HMWA 1W3PA 3HY8A 1W3RA 2QEAA 1TY9A 3R5PA 1CI0A 1RZ0A 3NFWA 1YOAA 4ZKYA 3FKHA 3B5MA 2R0XA 3RH7A 2I51A 3DB0A 4F07A 4HX6A 3VY5A 3R5YA 3F7EA 1G77A 2AQ6A 1XHNA 3EC6A 3KYGA 4Y9IA 1XXOA 1JNWA 2ASFA 5JABA 3SWJA 3KYFA 2OL5A 3PFTA 2FHQA 2GJGA 4HMSA 1EJEA 2D38A 3R5RA 4HMTA 2RDEA 3VY2A 3BPKA 2X1KA 1WV4A 3K87A 3U34A 3CB0A 1FLMA 2FG9A 3ZOHA 2PTFA 2IMLA 5ESCA 2OU5A 1NRGA 3AMFA 4N7RC 3ZOGA 3ZOEA 4YBNA 4HMVA 3R5LA 3ZOCA 3K88A 2ED4A 1W3QA 5CHOA 1WGBA 2HQ9A 2ARZA 3IN6A 1G76A 4L82A 1W3OA 1USCA 1YLNA 2IG6A 4HMXA 2QCKA 2RE7A 3E4VA 2Q9KA 2R6VA 4IRAA 2ECRA 2NR4A 3GASA
chains in the Genus database with same CATH superfamily
1Y30A 2HQ7A 2GUJA 1RZ1A 3EAAA 3V4HA 4XHYA 4HMUA 1RFEA 3R5WA 2D37A 2D36A 3R5ZA 4YWNA 4HKHA 2VPAA 1I0RA 3FGEA 2I02A 1G79A 3K86A 2HTDA 3U0IA 1WLKA 3ZOFA 3VYAA 3U35A 3DMBA 1DNLA 3HMZA 3U5WA 1Y12A 1USFA 3ZODA 4R82A 1WLIA 2E83A 2X1JA 1T9MA 2ECUA 2IABA 3DNHA 4QVBA 2D5MA 1W9AA 3A6RA 3BA3A 2A2JA 1I0SA 2HHZA 3AWHA 1VL7A 3A6QA 3H96A 4XJ2A 2FURA 4Z85A 3TGVA 5BNCA 3A20A 3BNKA 4W64A 2HTIA 1AXJA 5CHEC 3CP3A 1G78A 4HMWA 1W3PA 3HY8A 1W3RA 2QEAA 1TY9A 3R5PA 1CI0A 1RZ0A 3NFWA 1YOAA 2P5ZX 4ZKYA 3FKHA 2L1TA 3B5MA 2R0XA 3RH7A 2I51A 3DB0A 4F07A 4HX6A 3VY5A 3R5YA 3F7EA 1G77A 2AQ6A 1XHNA 3EC6A 3KYGA 4Y9IA 1XXOA 1JNWA 2ASFA 5JABA 3SWJA 2K4QA 3KYFA 2OL5A 3PFTA 2FHQA 2GJGA 4HMSA 1EJEA 2D38A 3R5RA 4HMTA 2RDEA 3VY2A 3BPKA 2X1KA 1WV4A 3K87A 3U34A 3CB0A 1FLMA 2FG9A 3ZOHA 2PTFA 2IMLA 3HE1A 5ESCA 2OU5A 1NRGA 3AMFA 4N7RC 3ZOGA 3ZOEA 4YBNA 4HMVA 3R5LA 3ZOCA 3K88A 2ED4A 1W3QA 5CHOA 4TV4A 1WGBA 2HQ9A 2ARZA 3IN6A 4MTKA 1G76A 4L82A 1W3OA 1USCA 1YLNA 2IG6A 4HMXA 2QCKA 2RE7A 4UHVA 3E4VA 2Q9KA 2R6VA 4IRAA 2ECRA 2NR4A 3GASA
chains in the Genus database with same CATH topology
1Y30A 2HQ7A 1RZ1A 4XHYA 4HMUA 1RFEA 3R5WA 2D37A 2D36A 3R5ZA 4YWNA 2VPAA 1I0RA 3FGEA 2I02A 1G79A 3K86A 2HTDA 3U0IA 1WLKA 3ZOFA 3VYAA 3U35A 3DMBA 1DNLA 3HMZA 3U5WA 1USFA 3ZODA 4R82A 1WLIA 2E83A 2X1JA 1T9MA 2ECUA 2IABA 3DNHA 4QVBA 2D5MA 1W9AA 3A6RA 3BA3A 2A2JA 1I0SA 2HHZA 3AWHA 1VL7A 3A6QA 3H96A 4XJ2A 2FURA 4Z85A 3TGVA 5BNCA 3A20A 3BNKA 2HTIA 1AXJA 5CHEC 3CP3A 1G78A 4HMWA 1W3PA 3HY8A 1W3RA 2QEAA 1TY9A 3R5PA 1CI0A 1RZ0A 3NFWA 1YOAA 4ZKYA 3FKHA 3B5MA 2R0XA 3RH7A 2I51A 3DB0A 4F07A 4HX6A 3VY5A 3R5YA 3F7EA 1G77A 2AQ6A 1XHNA 3EC6A 3KYGA 4Y9IA 1XXOA 1JNWA 2ASFA 5JABA 3SWJA 3KYFA 2OL5A 3PFTA 2FHQA 2GJGA 4HMSA 1EJEA 2D38A 3R5RA 4HMTA 2RDEA 3VY2A 3BPKA 2X1KA 1WV4A 3K87A 3U34A 3CB0A 1FLMA 2FG9A 3ZOHA 2PTFA 2IMLA 5ESCA 2OU5A 1NRGA 3AMFA 4N7RC 3ZOGA 3ZOEA 4YBNA 4HMVA 3R5LA 3ZOCA 3K88A 2ED4A 1W3QA 5CHOA 1WGBA 2HQ9A 2ARZA 3IN6A 1G76A 4L82A 1W3OA 1USCA 1YLNA 2IG6A 4HMXA 2QCKA 2RE7A 3E4VA 2Q9KA 2R6VA 4IRAA 2ECRA 2NR4A 3GASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y30 A;  2HQ7 A;  1RZ1 A;  4XHY A;  4HMU A;  1RFE A;  3R5W A;  2D37 A;  2D36 A;  3R5Z A;  4YWN A;  2VPA A;  1I0R A;  3FGE A;  2I02 A;  1G79 A;  3K86 A;  2HTD A;  3U0I A;  1WLK A;  3ZOF A;  3VYA A;  3U35 A;  3DMB A;  1DNL A;  3HMZ A;  3U5W A;  1USF A;  3ZOD A;  4R82 A;  1WLI A;  2E83 A;  2X1J A;  1T9M A;  2ECU A;  2IAB A;  3DNH A;  4QVB A;  2D5M A;  1W9A A;  3A6R A;  3BA3 A;  2A2J A;  1I0S A;  2HHZ A;  3AWH A;  1VL7 A;  3A6Q A;  3H96 A;  4XJ2 A;  2FUR A;  4Z85 A;  3TGV A;  5BNC A;  3A20 A;  3BNK A;  2HTI A;  1AXJ A;  5CHE C;  3CP3 A;  1G78 A;  4HMW A;  1W3P A;  3HY8 A;  1W3R A;  2QEA A;  1TY9 A;  3R5P A;  1CI0 A;  1RZ0 A;  3NFW A;  1YOA A;  4ZKY A;  3FKH A;  3B5M A;  2R0X A;  3RH7 A;  2I51 A;  3DB0 A;  4F07 A;  4HX6 A;  3VY5 A;  3R5Y A;  3F7E A;  1G77 A;  2AQ6 A;  1XHN A;  3EC6 A;  3KYG A;  4Y9I A;  1XXO A;  1JNW A;  2ASF A;  5JAB A;  3SWJ A;  3KYF A;  2OL5 A;  3PFT A;  2FHQ A;  2GJG A;  4HMS A;  1EJE A;  2D38 A;  3R5R A;  4HMT A;  2RDE A;  3VY2 A;  3BPK A;  2X1K A;  1WV4 A;  3K87 A;  3U34 A;  3CB0 A;  1FLM A;  2FG9 A;  3ZOH A;  2PTF A;  2IML A;  5ESC A;  2OU5 A;  1NRG A;  3AMF A;  4N7R C;  3ZOG A;  3ZOE A;  4YBN A;  4HMV A;  3R5L A;  3ZOC A;  3K88 A;  2ED4 A;  1W3Q A;  5CHO A;  1WGB A;  2HQ9 A;  2ARZ A;  3IN6 A;  1G76 A;  4L82 A;  1W3O A;  1USC A;  1YLN A;  2IG6 A;  4HMX A;  2QCK A;  2RE7 A;  3E4V A;  2Q9K A;  2R6V A;  4IRA A;  2ECR A;  2NR4 A;  3GAS A; 
#chains in the Genus database with same CATH topology
 1Y30 A;  2HQ7 A;  2GUJ A;  1RZ1 A;  3EAA A;  3V4H A;  4XHY A;  4HMU A;  1RFE A;  3R5W A;  2D37 A;  2D36 A;  3R5Z A;  4YWN A;  4HKH A;  2VPA A;  1I0R A;  3FGE A;  2I02 A;  1G79 A;  3K86 A;  2HTD A;  3U0I A;  1WLK A;  3ZOF A;  3VYA A;  3U35 A;  3DMB A;  1DNL A;  3HMZ A;  3U5W A;  1Y12 A;  1USF A;  3ZOD A;  4R82 A;  1WLI A;  2E83 A;  2X1J A;  1T9M A;  2ECU A;  2IAB A;  3DNH A;  4QVB A;  2D5M A;  1W9A A;  3A6R A;  3BA3 A;  2A2J A;  1I0S A;  2HHZ A;  3AWH A;  1VL7 A;  3A6Q A;  3H96 A;  4XJ2 A;  2FUR A;  4Z85 A;  3TGV A;  5BNC A;  3A20 A;  3BNK A;  4W64 A;  2HTI A;  1AXJ A;  5CHE C;  3CP3 A;  1G78 A;  4HMW A;  1W3P A;  3HY8 A;  1W3R A;  2QEA A;  1TY9 A;  3R5P A;  1CI0 A;  1RZ0 A;  3NFW A;  1YOA A;  2P5Z X;  4ZKY A;  3FKH A;  2L1T A;  3B5M A;  2R0X A;  3RH7 A;  2I51 A;  3DB0 A;  4F07 A;  4HX6 A;  3VY5 A;  3R5Y A;  3F7E A;  1G77 A;  2AQ6 A;  1XHN A;  3EC6 A;  3KYG A;  4Y9I A;  1XXO A;  1JNW A;  2ASF A;  5JAB A;  3SWJ A;  2K4Q A;  3KYF A;  2OL5 A;  3PFT A;  2FHQ A;  2GJG A;  4HMS A;  1EJE A;  2D38 A;  3R5R A;  4HMT A;  2RDE A;  3VY2 A;  3BPK A;  2X1K A;  1WV4 A;  3K87 A;  3U34 A;  3CB0 A;  1FLM A;  2FG9 A;  3ZOH A;  2PTF A;  2IML A;  3HE1 A;  5ESC A;  2OU5 A;  1NRG A;  3AMF A;  4N7R C;  3ZOG A;  3ZOE A;  4YBN A;  4HMV A;  3R5L A;  3ZOC A;  3K88 A;  2ED4 A;  1W3Q A;  5CHO A;  4TV4 A;  1WGB A;  2HQ9 A;  2ARZ A;  3IN6 A;  4MTK A;  1G76 A;  4L82 A;  1W3O A;  1USC A;  1YLN A;  2IG6 A;  4HMX A;  2QCK A;  2RE7 A;  4UHV A;  3E4V A;  2Q9K A;  2R6V A;  4IRA A;  2ECR A;  2NR4 A;  3GAS A; 
#chains in the Genus database with same CATH homology
 1Y30 A;  2HQ7 A;  1RZ1 A;  4XHY A;  4HMU A;  1RFE A;  3R5W A;  2D37 A;  2D36 A;  3R5Z A;  4YWN A;  2VPA A;  1I0R A;  3FGE A;  2I02 A;  1G79 A;  3K86 A;  2HTD A;  3U0I A;  1WLK A;  3ZOF A;  3VYA A;  3U35 A;  3DMB A;  1DNL A;  3HMZ A;  3U5W A;  1USF A;  3ZOD A;  4R82 A;  1WLI A;  2E83 A;  2X1J A;  1T9M A;  2ECU A;  2IAB A;  3DNH A;  4QVB A;  2D5M A;  1W9A A;  3A6R A;  3BA3 A;  2A2J A;  1I0S A;  2HHZ A;  3AWH A;  1VL7 A;  3A6Q A;  3H96 A;  4XJ2 A;  2FUR A;  4Z85 A;  3TGV A;  5BNC A;  3A20 A;  3BNK A;  2HTI A;  1AXJ A;  5CHE C;  3CP3 A;  1G78 A;  4HMW A;  1W3P A;  3HY8 A;  1W3R A;  2QEA A;  1TY9 A;  3R5P A;  1CI0 A;  1RZ0 A;  3NFW A;  1YOA A;  4ZKY A;  3FKH A;  3B5M A;  2R0X A;  3RH7 A;  2I51 A;  3DB0 A;  4F07 A;  4HX6 A;  3VY5 A;  3R5Y A;  3F7E A;  1G77 A;  2AQ6 A;  1XHN A;  3EC6 A;  3KYG A;  4Y9I A;  1XXO A;  1JNW A;  2ASF A;  5JAB A;  3SWJ A;  3KYF A;  2OL5 A;  3PFT A;  2FHQ A;  2GJG A;  4HMS A;  1EJE A;  2D38 A;  3R5R A;  4HMT A;  2RDE A;  3VY2 A;  3BPK A;  2X1K A;  1WV4 A;  3K87 A;  3U34 A;  3CB0 A;  1FLM A;  2FG9 A;  3ZOH A;  2PTF A;  2IML A;  5ESC A;  2OU5 A;  1NRG A;  3AMF A;  4N7R C;  3ZOG A;  3ZOE A;  4YBN A;  4HMV A;  3R5L A;  3ZOC A;  3K88 A;  2ED4 A;  1W3Q A;  5CHO A;  1WGB A;  2HQ9 A;  2ARZ A;  3IN6 A;  1G76 A;  4L82 A;  1W3O A;  1USC A;  1YLN A;  2IG6 A;  4HMX A;  2QCK A;  2RE7 A;  3E4V A;  2Q9K A;  2R6V A;  4IRA A;  2ECR A;  2NR4 A;  3GAS A; 
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