4HMUA

Crystal structure of phzg from pseudomonas fluorescens 2-79 in complex with tetrahydrophenazine-1-carboxylic acid after 1 day of soaking
Total Genus 52
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
202
structure length
202
Chain Sequence
GTLDAPFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSDTGWNVRRLQP
2040608010012014016018020020015010050
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (28-32)AH2 (37-51)TVIII1 (34-37)TI1 (55-58)EMPTYTI3 (81-84)S1 (58-64)S5 (104-111)AH4 (129-138)S2 (70-76)AH6 (159-171)S3 (79-81)S4 (84-90)AH3 (94-101)3H1 (112-114)TVIII2 (156-159)S6 (116-126)3H2 (141-143)AH5 (144-149)TII1 (151-154)S7 (182-199)TI5 (179-182)TI4 (90-93)TI2 (65-68)TIV2 (198-201)TIV1 (53-56)Updating...
connected with : NaN
publication title Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis
pubmed doi rcsb
molecule keywords Phenazine biosynthesis protein phzG
molecule tags Oxidoreductase
source organism Pseudomonas fluorescens
total genus 52
structure length 202
sequence length 202
chains with identical sequence B
ec nomenclature ec 1.4.-.-:
pdb deposition date 2012-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4hmuA00
2ED4A 2HHZA 2I02A 5CHOA 3VY2A 3ZOGA 4Z85A 5ESCA 1AXJA 3B5MA 3KYGA 4HMXA 3U35A 1USFA 1WLKA 3K87A 3R5ZA 2PTFA 3U34A 2FG9A 3IN6A 2QCKA 3F7EA 1XHNA 3R5YA 5CHEC 4R82A 5BNCA 2ASFA 1YLNA 1I0RA 3R5LA 3KYFA 2RE7A 1RFEA 2RDEA 1DNLA 2D38A 2ECUA 3A20A 3DNHA 1W3QA 2GJGA 2FHQA 2HTDA 1VL7A 4HMWA 2X1KA 2ECRA 2OL5A 3E4VA 5JABA 1WGBA 3NFWA 3ZODA 1CI0A 3HMZA 4F07A 3R5PA 2D36A 4QVBA 2NR4A 2A2JA 3A6RA 1T9MA 2I51A 1W3PA 3GASA 1RZ1A 1FLMA 3U5WA 1I0SA 3EC6A 3BNKA 2D37A 1W9AA 3DMBA 2HQ7A 1USCA 1TY9A 4HX6A 4IRAA 3FKHA 3SWJA 3CB0A 1XXOA 3FGEA 3TGVA 4Y9IA 4HMSA 3ZOFA 4XJ2A 4HMUA 3BA3A 3HY8A 3ZOEA 2FURA 1W3RA 2D5MA 3DB0A 2HTIA 4L82A 1RZ0A 1WV4A 4HMVA 2ARZA 4HMTA 4XHYA 2QEAA 3RH7A 1G77A 2Q9KA 1Y30A 2E83A 2OU5A 4ZKYA 1W3OA 2X1JA 3ZOCA 3AWHA 4YWNA 3VYAA 2R0XA 1G78A 3U0IA 1EJEA 3K88A 1G79A 3R5RA 3K86A 3R5WA 3VY5A 3CP3A 2VPAA 1NRGA 2IMLA 3A6QA 3H96A 3PFTA 4N7RC 2IG6A 2AQ6A 2HQ9A 2IABA 3AMFA 1YOAA 4YBNA 2R6VA 3ZOHA 3BPKA 1JNWA 1WLIA 1G76A
chains in the Genus database with same CATH superfamily
2ED4A 2HHZA 2I02A 5CHOA 3VY2A 3ZOGA 4Z85A 5ESCA 1AXJA 4HKHA 3B5MA 3KYGA 4HMXA 3U35A 1USFA 1WLKA 3K87A 3R5ZA 2PTFA 3U34A 2FG9A 3IN6A 2QCKA 3F7EA 1XHNA 3R5YA 4TV4A 5CHEC 4R82A 5BNCA 2ASFA 1YLNA 1I0RA 3R5LA 3KYFA 2RE7A 3HE1A 1RFEA 1Y12A 2RDEA 1DNLA 2D38A 2ECUA 2P5ZX 3A20A 4MTKA 3DNHA 1W3QA 2GJGA 2FHQA 2HTDA 3V4HA 4UHVA 1VL7A 4HMWA 2X1KA 2ECRA 2OL5A 3E4VA 5JABA 1WGBA 3NFWA 3ZODA 1CI0A 3HMZA 4F07A 3R5PA 2D36A 4QVBA 2NR4A 2A2JA 3A6RA 1T9MA 2I51A 1W3PA 3GASA 1RZ1A 1FLMA 3U5WA 1I0SA 3EC6A 3BNKA 2D37A 1W9AA 3DMBA 2HQ7A 1USCA 1TY9A 4HX6A 4IRAA 3FKHA 3EAAA 3SWJA 3CB0A 1XXOA 3FGEA 3TGVA 4Y9IA 4HMSA 3ZOFA 4XJ2A 4HMUA 3BA3A 3HY8A 3ZOEA 2FURA 1W3RA 2D5MA 2K4QA 3DB0A 2HTIA 4L82A 1RZ0A 1WV4A 4HMVA 2ARZA 4HMTA 4XHYA 2QEAA 3RH7A 1G77A 2Q9KA 1Y30A 2E83A 2OU5A 4ZKYA 1W3OA 2X1JA 3ZOCA 3AWHA 4YWNA 3VYAA 2GUJA 2R0XA 1G78A 3U0IA 1EJEA 3K88A 1G79A 3R5RA 3K86A 3R5WA 3VY5A 3CP3A 2VPAA 1NRGA 2IMLA 3A6QA 3H96A 3PFTA 4N7RC 2IG6A 2L1TA 2AQ6A 2HQ9A 4W64A 2IABA 3AMFA 1YOAA 4YBNA 2R6VA 3ZOHA 3BPKA 1JNWA 1WLIA 1G76A
chains in the Genus database with same CATH topology
2ED4A 2HHZA 2I02A 5CHOA 3VY2A 3ZOGA 4Z85A 5ESCA 1AXJA 3B5MA 3KYGA 4HMXA 3U35A 1USFA 1WLKA 3K87A 3R5ZA 2PTFA 3U34A 2FG9A 3IN6A 2QCKA 3F7EA 1XHNA 3R5YA 5CHEC 4R82A 5BNCA 2ASFA 1YLNA 1I0RA 3R5LA 3KYFA 2RE7A 1RFEA 2RDEA 1DNLA 2D38A 2ECUA 3A20A 3DNHA 1W3QA 2GJGA 2FHQA 2HTDA 1VL7A 4HMWA 2X1KA 2ECRA 2OL5A 3E4VA 5JABA 1WGBA 3NFWA 3ZODA 1CI0A 3HMZA 4F07A 3R5PA 2D36A 4QVBA 2NR4A 2A2JA 3A6RA 1T9MA 2I51A 1W3PA 3GASA 1RZ1A 1FLMA 3U5WA 1I0SA 3EC6A 3BNKA 2D37A 1W9AA 3DMBA 2HQ7A 1USCA 1TY9A 4HX6A 4IRAA 3FKHA 3SWJA 3CB0A 1XXOA 3FGEA 3TGVA 4Y9IA 4HMSA 3ZOFA 4XJ2A 4HMUA 3BA3A 3HY8A 3ZOEA 2FURA 1W3RA 2D5MA 3DB0A 2HTIA 4L82A 1RZ0A 1WV4A 4HMVA 2ARZA 4HMTA 4XHYA 2QEAA 3RH7A 1G77A 2Q9KA 1Y30A 2E83A 2OU5A 4ZKYA 1W3OA 2X1JA 3ZOCA 3AWHA 4YWNA 3VYAA 2R0XA 1G78A 3U0IA 1EJEA 3K88A 1G79A 3R5RA 3K86A 3R5WA 3VY5A 3CP3A 2VPAA 1NRGA 2IMLA 3A6QA 3H96A 3PFTA 4N7RC 2IG6A 2AQ6A 2HQ9A 2IABA 3AMFA 1YOAA 4YBNA 2R6VA 3ZOHA 3BPKA 1JNWA 1WLIA 1G76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ED4 A;  2HHZ A;  2I02 A;  5CHO A;  3VY2 A;  3ZOG A;  4Z85 A;  5ESC A;  1AXJ A;  3B5M A;  3KYG A;  4HMX A;  3U35 A;  1USF A;  1WLK A;  3K87 A;  3R5Z A;  2PTF A;  3U34 A;  2FG9 A;  3IN6 A;  2QCK A;  3F7E A;  1XHN A;  3R5Y A;  5CHE C;  4R82 A;  5BNC A;  2ASF A;  1YLN A;  1I0R A;  3R5L A;  3KYF A;  2RE7 A;  1RFE A;  2RDE A;  1DNL A;  2D38 A;  2ECU A;  3A20 A;  3DNH A;  1W3Q A;  2GJG A;  2FHQ A;  2HTD A;  1VL7 A;  4HMW A;  2X1K A;  2ECR A;  2OL5 A;  3E4V A;  5JAB A;  1WGB A;  3NFW A;  3ZOD A;  1CI0 A;  3HMZ A;  4F07 A;  3R5P A;  2D36 A;  4QVB A;  2NR4 A;  2A2J A;  3A6R A;  1T9M A;  2I51 A;  1W3P A;  3GAS A;  1RZ1 A;  1FLM A;  3U5W A;  1I0S A;  3EC6 A;  3BNK A;  2D37 A;  1W9A A;  3DMB A;  2HQ7 A;  1USC A;  1TY9 A;  4HX6 A;  4IRA A;  3FKH A;  3SWJ A;  3CB0 A;  1XXO A;  3FGE A;  3TGV A;  4Y9I A;  4HMS A;  3ZOF A;  4XJ2 A;  4HMU A;  3BA3 A;  3HY8 A;  3ZOE A;  2FUR A;  1W3R A;  2D5M A;  3DB0 A;  2HTI A;  4L82 A;  1RZ0 A;  1WV4 A;  4HMV A;  2ARZ A;  4HMT A;  4XHY A;  2QEA A;  3RH7 A;  1G77 A;  2Q9K A;  1Y30 A;  2E83 A;  2OU5 A;  4ZKY A;  1W3O A;  2X1J A;  3ZOC A;  3AWH A;  4YWN A;  3VYA A;  2R0X A;  1G78 A;  3U0I A;  1EJE A;  3K88 A;  1G79 A;  3R5R A;  3K86 A;  3R5W A;  3VY5 A;  3CP3 A;  2VPA A;  1NRG A;  2IML A;  3A6Q A;  3H96 A;  3PFT A;  4N7R C;  2IG6 A;  2AQ6 A;  2HQ9 A;  2IAB A;  3AMF A;  1YOA A;  4YBN A;  2R6V A;  3ZOH A;  3BPK A;  1JNW A;  1WLI A;  1G76 A; 
#chains in the Genus database with same CATH topology
 2ED4 A;  2HHZ A;  2I02 A;  5CHO A;  3VY2 A;  3ZOG A;  4Z85 A;  5ESC A;  1AXJ A;  4HKH A;  3B5M A;  3KYG A;  4HMX A;  3U35 A;  1USF A;  1WLK A;  3K87 A;  3R5Z A;  2PTF A;  3U34 A;  2FG9 A;  3IN6 A;  2QCK A;  3F7E A;  1XHN A;  3R5Y A;  4TV4 A;  5CHE C;  4R82 A;  5BNC A;  2ASF A;  1YLN A;  1I0R A;  3R5L A;  3KYF A;  2RE7 A;  3HE1 A;  1RFE A;  1Y12 A;  2RDE A;  1DNL A;  2D38 A;  2ECU A;  2P5Z X;  3A20 A;  4MTK A;  3DNH A;  1W3Q A;  2GJG A;  2FHQ A;  2HTD A;  3V4H A;  4UHV A;  1VL7 A;  4HMW A;  2X1K A;  2ECR A;  2OL5 A;  3E4V A;  5JAB A;  1WGB A;  3NFW A;  3ZOD A;  1CI0 A;  3HMZ A;  4F07 A;  3R5P A;  2D36 A;  4QVB A;  2NR4 A;  2A2J A;  3A6R A;  1T9M A;  2I51 A;  1W3P A;  3GAS A;  1RZ1 A;  1FLM A;  3U5W A;  1I0S A;  3EC6 A;  3BNK A;  2D37 A;  1W9A A;  3DMB A;  2HQ7 A;  1USC A;  1TY9 A;  4HX6 A;  4IRA A;  3FKH A;  3EAA A;  3SWJ A;  3CB0 A;  1XXO A;  3FGE A;  3TGV A;  4Y9I A;  4HMS A;  3ZOF A;  4XJ2 A;  4HMU A;  3BA3 A;  3HY8 A;  3ZOE A;  2FUR A;  1W3R A;  2D5M A;  2K4Q A;  3DB0 A;  2HTI A;  4L82 A;  1RZ0 A;  1WV4 A;  4HMV A;  2ARZ A;  4HMT A;  4XHY A;  2QEA A;  3RH7 A;  1G77 A;  2Q9K A;  1Y30 A;  2E83 A;  2OU5 A;  4ZKY A;  1W3O A;  2X1J A;  3ZOC A;  3AWH A;  4YWN A;  3VYA A;  2GUJ A;  2R0X A;  1G78 A;  3U0I A;  1EJE A;  3K88 A;  1G79 A;  3R5R A;  3K86 A;  3R5W A;  3VY5 A;  3CP3 A;  2VPA A;  1NRG A;  2IML A;  3A6Q A;  3H96 A;  3PFT A;  4N7R C;  2IG6 A;  2L1T A;  2AQ6 A;  2HQ9 A;  4W64 A;  2IAB A;  3AMF A;  1YOA A;  4YBN A;  2R6V A;  3ZOH A;  3BPK A;  1JNW A;  1WLI A;  1G76 A; 
#chains in the Genus database with same CATH homology
 2ED4 A;  2HHZ A;  2I02 A;  5CHO A;  3VY2 A;  3ZOG A;  4Z85 A;  5ESC A;  1AXJ A;  3B5M A;  3KYG A;  4HMX A;  3U35 A;  1USF A;  1WLK A;  3K87 A;  3R5Z A;  2PTF A;  3U34 A;  2FG9 A;  3IN6 A;  2QCK A;  3F7E A;  1XHN A;  3R5Y A;  5CHE C;  4R82 A;  5BNC A;  2ASF A;  1YLN A;  1I0R A;  3R5L A;  3KYF A;  2RE7 A;  1RFE A;  2RDE A;  1DNL A;  2D38 A;  2ECU A;  3A20 A;  3DNH A;  1W3Q A;  2GJG A;  2FHQ A;  2HTD A;  1VL7 A;  4HMW A;  2X1K A;  2ECR A;  2OL5 A;  3E4V A;  5JAB A;  1WGB A;  3NFW A;  3ZOD A;  1CI0 A;  3HMZ A;  4F07 A;  3R5P A;  2D36 A;  4QVB A;  2NR4 A;  2A2J A;  3A6R A;  1T9M A;  2I51 A;  1W3P A;  3GAS A;  1RZ1 A;  1FLM A;  3U5W A;  1I0S A;  3EC6 A;  3BNK A;  2D37 A;  1W9A A;  3DMB A;  2HQ7 A;  1USC A;  1TY9 A;  4HX6 A;  4IRA A;  3FKH A;  3SWJ A;  3CB0 A;  1XXO A;  3FGE A;  3TGV A;  4Y9I A;  4HMS A;  3ZOF A;  4XJ2 A;  4HMU A;  3BA3 A;  3HY8 A;  3ZOE A;  2FUR A;  1W3R A;  2D5M A;  3DB0 A;  2HTI A;  4L82 A;  1RZ0 A;  1WV4 A;  4HMV A;  2ARZ A;  4HMT A;  4XHY A;  2QEA A;  3RH7 A;  1G77 A;  2Q9K A;  1Y30 A;  2E83 A;  2OU5 A;  4ZKY A;  1W3O A;  2X1J A;  3ZOC A;  3AWH A;  4YWN A;  3VYA A;  2R0X A;  1G78 A;  3U0I A;  1EJE A;  3K88 A;  1G79 A;  3R5R A;  3K86 A;  3R5W A;  3VY5 A;  3CP3 A;  2VPA A;  1NRG A;  2IML A;  3A6Q A;  3H96 A;  3PFT A;  4N7R C;  2IG6 A;  2AQ6 A;  2HQ9 A;  2IAB A;  3AMF A;  1YOA A;  4YBN A;  2R6V A;  3ZOH A;  3BPK A;  1JNW A;  1WLI A;  1G76 A; 
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