4HMUA

Crystal structure of phzg from pseudomonas fluorescens 2-79 in complex with tetrahydrophenazine-1-carboxylic acid after 1 day of soaking
Total Genus 52
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
202
structure length
202
Chain Sequence
GTLDAPFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSDTGWNVRRLQP
2040608010012014016018020020015010050
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (28-32)AH2 (37-51)TVIII1 (34-37)TI1 (55-58)EMPTYTI3 (81-84)S1 (58-64)S5 (104-111)AH4 (129-138)S2 (70-76)AH6 (159-171)S3 (79-81)S4 (84-90)AH3 (94-101)3H1 (112-114)TVIII2 (156-159)S6 (116-126)3H2 (141-143)AH5 (144-149)TII1 (151-154)S7 (182-199)TI5 (179-182)TI4 (90-93)TI2 (65-68)TIV2 (198-201)TIV1 (53-56)Updating...
connected with : NaN
publication title Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis
pubmed doi rcsb
molecule keywords Phenazine biosynthesis protein phzG
molecule tags Oxidoreductase
source organism Pseudomonas fluorescens
total genus 52
structure length 202
sequence length 202
chains with identical sequence B
ec nomenclature ec 1.4.-.-:
pdb deposition date 2012-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4hmuA00
1YOAA 2D36A 1T9MA 5CHEC 2VPAA 2FG9A 4YWNA 3U34A 2RE7A 4Y9IA 3BNKA 3R5RA 2HTIA 2E83A 1RFEA 4QVBA 2ECRA 1G77A 2FURA 2PTFA 2HHZA 1AXJA 1I0RA 1W3OA 3U5WA 5JABA 2I02A 1DNLA 3A6QA 2GJGA 2RDEA 4IRAA 1W3PA 1WLIA 4YBNA 3U35A 2OU5A 1USCA 3ZOGA 2R6VA 1W3RA 1EJEA 3VY5A 2IABA 3BPKA 3AWHA 3K86A 3ZODA 2D38A 3HY8A 4HMSA 3RH7A 3ZOEA 3F7EA 3KYGA 1XHNA 2IMLA 2X1KA 3DNHA 3GASA 2ARZA 3CP3A 2D5MA 1WV4A 3ZOFA 4ZKYA 3A6RA 1G76A 3A20A 2HTDA 3BA3A 4L82A 4R82A 2Q9KA 3DB0A 3TGVA 2FHQA 1FLMA 2IG6A 2HQ9A 3VYAA 1YLNA 3R5ZA 4HMTA 1USFA 3R5LA 1G79A 2R0XA 2OL5A 3DMBA 2A2JA 4Z85A 3E4VA 4XJ2A 1G78A 1I0SA 2ASFA 4HMUA 1VL7A 3ZOHA 2I51A 3EC6A 3H96A 2QEAA 1Y30A 3FKHA 3SWJA 3AMFA 3U0IA 3IN6A 1JNWA 3K87A 3R5YA 3KYFA 3R5PA 1XXOA 2HQ7A 4F07A 2ECUA 2X1JA 1WGBA 5BNCA 1W9AA 3NFWA 4HX6A 1NRGA 2D37A 3R5WA 4HMVA 3VY2A 1WLKA 2NR4A 4XHYA 3FGEA 5ESCA 3ZOCA 1TY9A 3K88A 5CHOA 1RZ1A 1W3QA 3HMZA 4N7RC 3CB0A 2QCKA 2AQ6A 2ED4A 3PFTA 1CI0A 1RZ0A 4HMXA 4HMWA 3B5MA
chains in the Genus database with same CATH superfamily
1YOAA 2D36A 1T9MA 3V4HA 5CHEC 2VPAA 2FG9A 4YWNA 3U34A 2RE7A 4Y9IA 3BNKA 3R5RA 2HTIA 2E83A 1RFEA 4QVBA 2ECRA 1G77A 2FURA 2PTFA 2HHZA 1AXJA 1I0RA 1W3OA 3U5WA 5JABA 2I02A 4TV4A 1DNLA 3A6QA 4MTKA 2GJGA 2RDEA 4IRAA 1W3PA 1WLIA 4YBNA 3U35A 2OU5A 1USCA 3ZOGA 1Y12A 1W3RA 2R6VA 1EJEA 3VY5A 2IABA 2P5ZX 3BPKA 3AWHA 3K86A 3ZODA 2D38A 3HY8A 4HMSA 3RH7A 3ZOEA 3F7EA 3KYGA 1XHNA 2IMLA 2X1KA 3DNHA 3GASA 2ARZA 3CP3A 4HKHA 2D5MA 1WV4A 3ZOFA 4ZKYA 1G76A 3A20A 3A6RA 2HTDA 3BA3A 4L82A 4R82A 2Q9KA 3DB0A 3TGVA 2FHQA 1FLMA 2IG6A 2HQ9A 3VYAA 1YLNA 3R5ZA 4HMTA 1USFA 3R5LA 1G79A 2R0XA 2OL5A 3DMBA 2A2JA 4Z85A 3E4VA 4XJ2A 1G78A 1I0SA 2ASFA 4HMUA 1VL7A 3ZOHA 2L1TA 2I51A 3EC6A 3H96A 2QEAA 1Y30A 3FKHA 3SWJA 3AMFA 3U0IA 3IN6A 4UHVA 1JNWA 3K87A 3R5YA 3KYFA 3R5PA 1XXOA 2GUJA 2HQ7A 4F07A 2ECUA 2X1JA 1WGBA 5BNCA 1W9AA 3NFWA 4HX6A 1NRGA 2D37A 3R5WA 4HMVA 3VY2A 1WLKA 2NR4A 4XHYA 3FGEA 5ESCA 3ZOCA 1TY9A 3EAAA 4W64A 3K88A 5CHOA 3HE1A 1RZ1A 1W3QA 2K4QA 3HMZA 4N7RC 3CB0A 2QCKA 2AQ6A 2ED4A 3PFTA 1CI0A 1RZ0A 4HMXA 4HMWA 3B5MA
chains in the Genus database with same CATH topology
1YOAA 2D36A 1T9MA 5CHEC 2VPAA 2FG9A 4YWNA 3U34A 2RE7A 4Y9IA 3BNKA 3R5RA 2HTIA 2E83A 1RFEA 4QVBA 2ECRA 1G77A 2FURA 2PTFA 2HHZA 1AXJA 1I0RA 1W3OA 3U5WA 5JABA 2I02A 1DNLA 3A6QA 2GJGA 2RDEA 4IRAA 1W3PA 1WLIA 4YBNA 3U35A 2OU5A 1USCA 3ZOGA 2R6VA 1W3RA 1EJEA 3VY5A 2IABA 3BPKA 3AWHA 3K86A 3ZODA 2D38A 3HY8A 4HMSA 3RH7A 3ZOEA 3F7EA 3KYGA 1XHNA 2IMLA 2X1KA 3DNHA 3GASA 2ARZA 3CP3A 2D5MA 1WV4A 3ZOFA 4ZKYA 3A6RA 1G76A 3A20A 2HTDA 3BA3A 4L82A 4R82A 2Q9KA 3DB0A 3TGVA 2FHQA 1FLMA 2IG6A 2HQ9A 3VYAA 1YLNA 3R5ZA 4HMTA 1USFA 3R5LA 1G79A 2R0XA 2OL5A 3DMBA 2A2JA 4Z85A 3E4VA 4XJ2A 1G78A 1I0SA 2ASFA 4HMUA 1VL7A 3ZOHA 2I51A 3EC6A 3H96A 2QEAA 1Y30A 3FKHA 3SWJA 3AMFA 3U0IA 3IN6A 1JNWA 3K87A 3R5YA 3KYFA 3R5PA 1XXOA 2HQ7A 4F07A 2ECUA 2X1JA 1WGBA 5BNCA 1W9AA 3NFWA 4HX6A 1NRGA 2D37A 3R5WA 4HMVA 3VY2A 1WLKA 2NR4A 4XHYA 3FGEA 5ESCA 3ZOCA 1TY9A 3K88A 5CHOA 1RZ1A 1W3QA 3HMZA 4N7RC 3CB0A 2QCKA 2AQ6A 2ED4A 3PFTA 1CI0A 1RZ0A 4HMXA 4HMWA 3B5MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YOA A;  2D36 A;  1T9M A;  5CHE C;  2VPA A;  2FG9 A;  4YWN A;  3U34 A;  2RE7 A;  4Y9I A;  3BNK A;  3R5R A;  2HTI A;  2E83 A;  1RFE A;  4QVB A;  2ECR A;  1G77 A;  2FUR A;  2PTF A;  2HHZ A;  1AXJ A;  1I0R A;  1W3O A;  3U5W A;  5JAB A;  2I02 A;  1DNL A;  3A6Q A;  2GJG A;  2RDE A;  4IRA A;  1W3P A;  1WLI A;  4YBN A;  3U35 A;  2OU5 A;  1USC A;  3ZOG A;  2R6V A;  1W3R A;  1EJE A;  3VY5 A;  2IAB A;  3BPK A;  3AWH A;  3K86 A;  3ZOD A;  2D38 A;  3HY8 A;  4HMS A;  3RH7 A;  3ZOE A;  3F7E A;  3KYG A;  1XHN A;  2IML A;  2X1K A;  3DNH A;  3GAS A;  2ARZ A;  3CP3 A;  2D5M A;  1WV4 A;  3ZOF A;  4ZKY A;  3A6R A;  1G76 A;  3A20 A;  2HTD A;  3BA3 A;  4L82 A;  4R82 A;  2Q9K A;  3DB0 A;  3TGV A;  2FHQ A;  1FLM A;  2IG6 A;  2HQ9 A;  3VYA A;  1YLN A;  3R5Z A;  4HMT A;  1USF A;  3R5L A;  1G79 A;  2R0X A;  2OL5 A;  3DMB A;  2A2J A;  4Z85 A;  3E4V A;  4XJ2 A;  1G78 A;  1I0S A;  2ASF A;  4HMU A;  1VL7 A;  3ZOH A;  2I51 A;  3EC6 A;  3H96 A;  2QEA A;  1Y30 A;  3FKH A;  3SWJ A;  3AMF A;  3U0I A;  3IN6 A;  1JNW A;  3K87 A;  3R5Y A;  3KYF A;  3R5P A;  1XXO A;  2HQ7 A;  4F07 A;  2ECU A;  2X1J A;  1WGB A;  5BNC A;  1W9A A;  3NFW A;  4HX6 A;  1NRG A;  2D37 A;  3R5W A;  4HMV A;  3VY2 A;  1WLK A;  2NR4 A;  4XHY A;  3FGE A;  5ESC A;  3ZOC A;  1TY9 A;  3K88 A;  5CHO A;  1RZ1 A;  1W3Q A;  3HMZ A;  4N7R C;  3CB0 A;  2QCK A;  2AQ6 A;  2ED4 A;  3PFT A;  1CI0 A;  1RZ0 A;  4HMX A;  4HMW A;  3B5M A; 
#chains in the Genus database with same CATH topology
 1YOA A;  2D36 A;  1T9M A;  3V4H A;  5CHE C;  2VPA A;  2FG9 A;  4YWN A;  3U34 A;  2RE7 A;  4Y9I A;  3BNK A;  3R5R A;  2HTI A;  2E83 A;  1RFE A;  4QVB A;  2ECR A;  1G77 A;  2FUR A;  2PTF A;  2HHZ A;  1AXJ A;  1I0R A;  1W3O A;  3U5W A;  5JAB A;  2I02 A;  4TV4 A;  1DNL A;  3A6Q A;  4MTK A;  2GJG A;  2RDE A;  4IRA A;  1W3P A;  1WLI A;  4YBN A;  3U35 A;  2OU5 A;  1USC A;  3ZOG A;  1Y12 A;  1W3R A;  2R6V A;  1EJE A;  3VY5 A;  2IAB A;  2P5Z X;  3BPK A;  3AWH A;  3K86 A;  3ZOD A;  2D38 A;  3HY8 A;  4HMS A;  3RH7 A;  3ZOE A;  3F7E A;  3KYG A;  1XHN A;  2IML A;  2X1K A;  3DNH A;  3GAS A;  2ARZ A;  3CP3 A;  4HKH A;  2D5M A;  1WV4 A;  3ZOF A;  4ZKY A;  1G76 A;  3A20 A;  3A6R A;  2HTD A;  3BA3 A;  4L82 A;  4R82 A;  2Q9K A;  3DB0 A;  3TGV A;  2FHQ A;  1FLM A;  2IG6 A;  2HQ9 A;  3VYA A;  1YLN A;  3R5Z A;  4HMT A;  1USF A;  3R5L A;  1G79 A;  2R0X A;  2OL5 A;  3DMB A;  2A2J A;  4Z85 A;  3E4V A;  4XJ2 A;  1G78 A;  1I0S A;  2ASF A;  4HMU A;  1VL7 A;  3ZOH A;  2L1T A;  2I51 A;  3EC6 A;  3H96 A;  2QEA A;  1Y30 A;  3FKH A;  3SWJ A;  3AMF A;  3U0I A;  3IN6 A;  4UHV A;  1JNW A;  3K87 A;  3R5Y A;  3KYF A;  3R5P A;  1XXO A;  2GUJ A;  2HQ7 A;  4F07 A;  2ECU A;  2X1J A;  1WGB A;  5BNC A;  1W9A A;  3NFW A;  4HX6 A;  1NRG A;  2D37 A;  3R5W A;  4HMV A;  3VY2 A;  1WLK A;  2NR4 A;  4XHY A;  3FGE A;  5ESC A;  3ZOC A;  1TY9 A;  3EAA A;  4W64 A;  3K88 A;  5CHO A;  3HE1 A;  1RZ1 A;  1W3Q A;  2K4Q A;  3HMZ A;  4N7R C;  3CB0 A;  2QCK A;  2AQ6 A;  2ED4 A;  3PFT A;  1CI0 A;  1RZ0 A;  4HMX A;  4HMW A;  3B5M A; 
#chains in the Genus database with same CATH homology
 1YOA A;  2D36 A;  1T9M A;  5CHE C;  2VPA A;  2FG9 A;  4YWN A;  3U34 A;  2RE7 A;  4Y9I A;  3BNK A;  3R5R A;  2HTI A;  2E83 A;  1RFE A;  4QVB A;  2ECR A;  1G77 A;  2FUR A;  2PTF A;  2HHZ A;  1AXJ A;  1I0R A;  1W3O A;  3U5W A;  5JAB A;  2I02 A;  1DNL A;  3A6Q A;  2GJG A;  2RDE A;  4IRA A;  1W3P A;  1WLI A;  4YBN A;  3U35 A;  2OU5 A;  1USC A;  3ZOG A;  2R6V A;  1W3R A;  1EJE A;  3VY5 A;  2IAB A;  3BPK A;  3AWH A;  3K86 A;  3ZOD A;  2D38 A;  3HY8 A;  4HMS A;  3RH7 A;  3ZOE A;  3F7E A;  3KYG A;  1XHN A;  2IML A;  2X1K A;  3DNH A;  3GAS A;  2ARZ A;  3CP3 A;  2D5M A;  1WV4 A;  3ZOF A;  4ZKY A;  3A6R A;  1G76 A;  3A20 A;  2HTD A;  3BA3 A;  4L82 A;  4R82 A;  2Q9K A;  3DB0 A;  3TGV A;  2FHQ A;  1FLM A;  2IG6 A;  2HQ9 A;  3VYA A;  1YLN A;  3R5Z A;  4HMT A;  1USF A;  3R5L A;  1G79 A;  2R0X A;  2OL5 A;  3DMB A;  2A2J A;  4Z85 A;  3E4V A;  4XJ2 A;  1G78 A;  1I0S A;  2ASF A;  4HMU A;  1VL7 A;  3ZOH A;  2I51 A;  3EC6 A;  3H96 A;  2QEA A;  1Y30 A;  3FKH A;  3SWJ A;  3AMF A;  3U0I A;  3IN6 A;  1JNW A;  3K87 A;  3R5Y A;  3KYF A;  3R5P A;  1XXO A;  2HQ7 A;  4F07 A;  2ECU A;  2X1J A;  1WGB A;  5BNC A;  1W9A A;  3NFW A;  4HX6 A;  1NRG A;  2D37 A;  3R5W A;  4HMV A;  3VY2 A;  1WLK A;  2NR4 A;  4XHY A;  3FGE A;  5ESC A;  3ZOC A;  1TY9 A;  3K88 A;  5CHO A;  1RZ1 A;  1W3Q A;  3HMZ A;  4N7R C;  3CB0 A;  2QCK A;  2AQ6 A;  2ED4 A;  3PFT A;  1CI0 A;  1RZ0 A;  4HMX A;  4HMW A;  3B5M A; 
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