4HMX | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	202
structure length	202
Chain Sequence	GSVDVLFPEYDDPPSEPITLLKRWLATADVARVREPKALALATATSDGRISSRVIAFSSIDDRGVIFCTHSTSRKGRELTETGWASGLLYWRETGQQIMISGQAVPLEESENDKLWFGRSVPMHAMSSASHQSDELVDREALRAHAAELLALGVALPRPPRFVGYRLEPHEMEFWAASSDRLHRRLRYERDGNDWKTTQLQP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis pubmed doi rcsb
molecule keywords	Pyridoxamine 5'-phosphate oxidase
molecule tags	Oxidoreductase
source organism	Burkholderia
total genus	56
structure length	202
sequence length	202
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	2012-10-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	4hmxA00

2VPAA 2I51A 4HMVA 2D37A 2IABA 3GASA 3A6RA 1WLIA 2GJGA 3ZOGA 2FG9A 2QCKA 3ZODA 1WV4A 2X1KA 4IRAA 3U34A 2D5MA 2Q9KA 4F07A 1W9AA 3R5LA 2IMLA 3HY8A 2R6VA 2OL5A 1NRGA 3F7EA 4HMTA 1WGBA 2RE7A 4XJ2A 3U5WA 4L82A 4YWNA 3R5RA 4YBNA 3IN6A 1G79A 3A6QA 2NR4A 4HX6A 4HMXA 2ASFA 1FLMA 2ARZA 3B5MA 1YLNA 3AWHA 2I02A 1I0RA 3PFTA 3R5PA 3R5ZA 3HMZA 2R0XA 2D36A 1W3QA 4HMSA 1CI0A 1T9MA 1WLKA 3VY2A 4ZKYA 3ZOHA 3ZOCA 2HQ9A 3BPKA 1G76A 4R82A 3NFWA 3FGEA 2RDEA 3U0IA 1XXOA 1W3OA 1EJEA 3SWJA 3EC6A 3U35A 2X1JA 2PTFA 1YOAA 2HHZA 3K86A 4Y9IA 4XHYA 2AQ6A 2ECUA 3KYFA 3TGVA 2ECRA 3A20A 3CB0A 5ESCA 1AXJA 3RH7A 4HMUA 2D38A 1G78A 4N7RC 1G77A 3R5YA 5BNCA 1RZ1A 4HMWA 5CHEC 3AMFA 2ED4A 3VY5A 3E4VA 1W3PA 2HTDA 4QVBA 3H96A 3ZOEA 1TY9A 1JNWA 2E83A 3ZOFA 1XHNA 3R5WA 1RFEA 2A2JA 2IG6A 2OU5A 3DMBA 3K88A 5CHOA 1DNLA 2QEAA 1RZ0A 3KYGA 3K87A 5JABA 3VYAA 1W3RA 2HTIA 3BNKA 3CP3A 4Z85A 2FHQA 2FURA 1Y30A 1VL7A 1I0SA 1USFA 3BA3A 1USCA 3DNHA 3DB0A 2HQ7A 3FKHA
chains in the Genus database with same CATH superfamily

2VPAA 2I51A 4HMVA 2D37A 2IABA 3GASA 3A6RA 2K4QA 1WLIA 2GJGA 3ZOGA 4UHVA 2FG9A 2QCKA 3ZODA 1WV4A 2X1KA 4IRAA 3U34A 2D5MA 2Q9KA 4F07A 1W9AA 3R5LA 2IMLA 1Y12A 3HY8A 2R6VA 2OL5A 1NRGA 3F7EA 4HMTA 1WGBA 2RE7A 4XJ2A 3U5WA 4L82A 4YWNA 3R5RA 4YBNA 4HKHA 4TV4A 3IN6A 1G79A 3A6QA 2NR4A 4HX6A 4HMXA 2ASFA 1FLMA 2ARZA 3B5MA 1YLNA 3AWHA 2I02A 1I0RA 3PFTA 3R5PA 3R5ZA 3HMZA 2R0XA 2D36A 1W3QA 4HMSA 1CI0A 1T9MA 1WLKA 3VY2A 4ZKYA 3ZOHA 3ZOCA 2HQ9A 3BPKA 1G76A 4R82A 3NFWA 3FGEA 2RDEA 3U0IA 1XXOA 1W3OA 1EJEA 3SWJA 3EC6A 3U35A 2X1JA 2PTFA 1YOAA 2HHZA 3K86A 4Y9IA 4XHYA 2AQ6A 2ECUA 3KYFA 3TGVA 2ECRA 3A20A 3CB0A 5ESCA 1AXJA 3RH7A 4HMUA 2D38A 1G78A 4N7RC 1G77A 3R5YA 5BNCA 1RZ1A 4W64A 2GUJA 4HMWA 5CHEC 3AMFA 2ED4A 3VY5A 3E4VA 1W3PA 2HTDA 4QVBA 3H96A 3ZOEA 1TY9A 1JNWA 2E83A 3ZOFA 1XHNA 3R5WA 1RFEA 2A2JA 2IG6A 2L1TA 3V4HA 2OU5A 3DMBA 3K88A 5CHOA 1DNLA 2QEAA 1RZ0A 3KYGA 3EAAA 3HE1A 3K87A 5JABA 3VYAA 1W3RA 2HTIA 2P5ZX 3BNKA 3CP3A 4MTKA 2FHQA 2FURA 4Z85A 1Y30A 1VL7A 1I0SA 1USFA 3BA3A 1USCA 3DNHA 3DB0A 2HQ7A 3FKHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2VPA A;  2I51 A;  4HMV A;  2D37 A;  2IAB A;  3GAS A;  3A6R A;  1WLI A;  2GJG A;  3ZOG A;  2FG9 A;  2QCK A;  3ZOD A;  1WV4 A;  2X1K A;  4IRA A;  3U34 A;  2D5M A;  2Q9K A;  4F07 A;  1W9A A;  3R5L A;  2IML A;  3HY8 A;  2R6V A;  2OL5 A;  1NRG A;  3F7E A;  4HMT A;  1WGB A;  2RE7 A;  4XJ2 A;  3U5W A;  4L82 A;  4YWN A;  3R5R A;  4YBN A;  3IN6 A;  1G79 A;  3A6Q A;  2NR4 A;  4HX6 A;  4HMX A;  2ASF A;  1FLM A;  2ARZ A;  3B5M A;  1YLN A;  3AWH A;  2I02 A;  1I0R A;  3PFT A;  3R5P A;  3R5Z A;  3HMZ A;  2R0X A;  2D36 A;  1W3Q A;  4HMS A;  1CI0 A;  1T9M A;  1WLK A;  3VY2 A;  4ZKY A;  3ZOH A;  3ZOC A;  2HQ9 A;  3BPK A;  1G76 A;  4R82 A;  3NFW A;  3FGE A;  2RDE A;  3U0I A;  1XXO A;  1W3O A;  1EJE A;  3SWJ A;  3EC6 A;  3U35 A;  2X1J A;  2PTF A;  1YOA A;  2HHZ A;  3K86 A;  4Y9I A;  4XHY A;  2AQ6 A;  2ECU A;  3KYF A;  3TGV A;  2ECR A;  3A20 A;  3CB0 A;  5ESC A;  1AXJ A;  3RH7 A;  4HMU A;  2D38 A;  1G78 A;  4N7R C;  1G77 A;  3R5Y A;  5BNC A;  1RZ1 A;  4HMW A;  5CHE C;  3AMF A;  2ED4 A;  3VY5 A;  3E4V A;  1W3P A;  2HTD A;  4QVB A;  3H96 A;  3ZOE A;  1TY9 A;  1JNW A;  2E83 A;  3ZOF A;  1XHN A;  3R5W A;  1RFE A;  2A2J A;  2IG6 A;  2OU5 A;  3DMB A;  3K88 A;  5CHO A;  1DNL A;  2QEA A;  1RZ0 A;  3KYG A;  3K87 A;  5JAB A;  3VYA A;  1W3R A;  2HTI A;  3BNK A;  3CP3 A;  4Z85 A;  2FHQ A;  2FUR A;  1Y30 A;  1VL7 A;  1I0S A;  1USF A;  3BA3 A;  1USC A;  3DNH A;  3DB0 A;  2HQ7 A;  3FKH A; 
#chains in the Genus database with same CATH topology
 2VPA A;  2I51 A;  4HMV A;  2D37 A;  2IAB A;  3GAS A;  3A6R A;  2K4Q A;  1WLI A;  2GJG A;  3ZOG A;  4UHV A;  2FG9 A;  2QCK A;  3ZOD A;  1WV4 A;  2X1K A;  4IRA A;  3U34 A;  2D5M A;  2Q9K A;  4F07 A;  1W9A A;  3R5L A;  2IML A;  1Y12 A;  3HY8 A;  2R6V A;  2OL5 A;  1NRG A;  3F7E A;  4HMT A;  1WGB A;  2RE7 A;  4XJ2 A;  3U5W A;  4L82 A;  4YWN A;  3R5R A;  4YBN A;  4HKH A;  4TV4 A;  3IN6 A;  1G79 A;  3A6Q A;  2NR4 A;  4HX6 A;  4HMX A;  2ASF A;  1FLM A;  2ARZ A;  3B5M A;  1YLN A;  3AWH A;  2I02 A;  1I0R A;  3PFT A;  3R5P A;  3R5Z A;  3HMZ A;  2R0X A;  2D36 A;  1W3Q A;  4HMS A;  1CI0 A;  1T9M A;  1WLK A;  3VY2 A;  4ZKY A;  3ZOH A;  3ZOC A;  2HQ9 A;  3BPK A;  1G76 A;  4R82 A;  3NFW A;  3FGE A;  2RDE A;  3U0I A;  1XXO A;  1W3O A;  1EJE A;  3SWJ A;  3EC6 A;  3U35 A;  2X1J A;  2PTF A;  1YOA A;  2HHZ A;  3K86 A;  4Y9I A;  4XHY A;  2AQ6 A;  2ECU A;  3KYF A;  3TGV A;  2ECR A;  3A20 A;  3CB0 A;  5ESC A;  1AXJ A;  3RH7 A;  4HMU A;  2D38 A;  1G78 A;  4N7R C;  1G77 A;  3R5Y A;  5BNC A;  1RZ1 A;  4W64 A;  2GUJ A;  4HMW A;  5CHE C;  3AMF A;  2ED4 A;  3VY5 A;  3E4V A;  1W3P A;  2HTD A;  4QVB A;  3H96 A;  3ZOE A;  1TY9 A;  1JNW A;  2E83 A;  3ZOF A;  1XHN A;  3R5W A;  1RFE A;  2A2J A;  2IG6 A;  2L1T A;  3V4H A;  2OU5 A;  3DMB A;  3K88 A;  5CHO A;  1DNL A;  2QEA A;  1RZ0 A;  3KYG A;  3EAA A;  3HE1 A;  3K87 A;  5JAB A;  3VYA A;  1W3R A;  2HTI A;  2P5Z X;  3BNK A;  3CP3 A;  4MTK A;  2FHQ A;  2FUR A;  4Z85 A;  1Y30 A;  1VL7 A;  1I0S A;  1USF A;  3BA3 A;  1USC A;  3DNH A;  3DB0 A;  2HQ7 A;  3FKH A; 
#chains in the Genus database with same CATH homology
 2VPA A;  2I51 A;  4HMV A;  2D37 A;  2IAB A;  3GAS A;  3A6R A;  1WLI A;  2GJG A;  3ZOG A;  2FG9 A;  2QCK A;  3ZOD A;  1WV4 A;  2X1K A;  4IRA A;  3U34 A;  2D5M A;  2Q9K A;  4F07 A;  1W9A A;  3R5L A;  2IML A;  3HY8 A;  2R6V A;  2OL5 A;  1NRG A;  3F7E A;  4HMT A;  1WGB A;  2RE7 A;  4XJ2 A;  3U5W A;  4L82 A;  4YWN A;  3R5R A;  4YBN A;  3IN6 A;  1G79 A;  3A6Q A;  2NR4 A;  4HX6 A;  4HMX A;  2ASF A;  1FLM A;  2ARZ A;  3B5M A;  1YLN A;  3AWH A;  2I02 A;  1I0R A;  3PFT A;  3R5P A;  3R5Z A;  3HMZ A;  2R0X A;  2D36 A;  1W3Q A;  4HMS A;  1CI0 A;  1T9M A;  1WLK A;  3VY2 A;  4ZKY A;  3ZOH A;  3ZOC A;  2HQ9 A;  3BPK A;  1G76 A;  4R82 A;  3NFW A;  3FGE A;  2RDE A;  3U0I A;  1XXO A;  1W3O A;  1EJE A;  3SWJ A;  3EC6 A;  3U35 A;  2X1J A;  2PTF A;  1YOA A;  2HHZ A;  3K86 A;  4Y9I A;  4XHY A;  2AQ6 A;  2ECU A;  3KYF A;  3TGV A;  2ECR A;  3A20 A;  3CB0 A;  5ESC A;  1AXJ A;  3RH7 A;  4HMU A;  2D38 A;  1G78 A;  4N7R C;  1G77 A;  3R5Y A;  5BNC A;  1RZ1 A;  4HMW A;  5CHE C;  3AMF A;  2ED4 A;  3VY5 A;  3E4V A;  1W3P A;  2HTD A;  4QVB A;  3H96 A;  3ZOE A;  1TY9 A;  1JNW A;  2E83 A;  3ZOF A;  1XHN A;  3R5W A;  1RFE A;  2A2J A;  2IG6 A;  2OU5 A;  3DMB A;  3K88 A;  5CHO A;  1DNL A;  2QEA A;  1RZ0 A;  3KYG A;  3K87 A;  5JAB A;  3VYA A;  1W3R A;  2HTI A;  3BNK A;  3CP3 A;  4Z85 A;  2FHQ A;  2FUR A;  1Y30 A;  1VL7 A;  1I0S A;  1USF A;  3BA3 A;  1USC A;  3DNH A;  3DB0 A;  2HQ7 A;  3FKH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4HMXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations