4L82A

Structure of a putative oxidoreductase from rickettsia felis
Total Genus 41
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
156
structure length
156
Chain Sequence
VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S6 (69-74)TVIII1 (15-18)S1 (19-20)S3 (31-37)S2 (22-28)TIV1 (27-30)EMPTYTI3 (76-79)AH3 (80-87)S5 (49-55)TI1 (37-40)TVIII2 (44-47)S4 (41-44)S10 (130-142)TII'1 (127-130)TIV2 (45-48)TI2 (55-58)AH2 (60-66)TII1 (110-113)TIV5 (103-106)S8 (108-110)S11 (149-152)TIV4 (90-93)TI4 (92-95)TI5 (94-97)TI6 (102-105)S7 (99-101)S9 (115-127)TIV6 (151-154)AH1 (7-15)S12 (155-158)Updating...
connected with : NaN
publication title Structure of a putative oxidoreductase from Rickettsia felis
rcsb
molecule keywords RifeA.00250.a
molecule tags Oxidoreductase
source organism Rickettsia felis
total genus 41
structure length 156
sequence length 156
chains with identical sequence B, C, D
ec nomenclature ec 1.-.-.-:
pdb deposition date 2013-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4l82A00
1W3PA 3RH7A 1Y30A 3FGEA 1YOAA 3A20A 2Q9KA 4F07A 2I51A 3ZOFA 5CHEC 3A6QA 2HTDA 1WLIA 2FG9A 3VY5A 1NRGA 2ECUA 4YBNA 2HTIA 3ZOEA 2VPAA 4L82A 4HMVA 3K86A 4HMSA 4Z85A 1W3QA 2GJGA 1WLKA 2PTFA 3CB0A 3DNHA 3ZODA 5ESCA 3A6RA 2FURA 3R5WA 1G76A 1I0RA 1TY9A 3ZOGA 2D5MA 1EJEA 1USCA 2NR4A 1WGBA 3K87A 3B5MA 3HMZA 3TGVA 3DB0A 3NFWA 3ZOHA 4IRAA 1W3OA 3IN6A 2QEAA 2IG6A 1RFEA 2D38A 3HY8A 1FLMA 2IABA 2ECRA 5JABA 2HQ9A 3GASA 1W9AA 3R5PA 2X1KA 1AXJA 3E4VA 3U34A 3R5ZA 4QVBA 2D37A 3BNKA 2AQ6A 1USFA 4HMWA 1JNWA 3U5WA 1VL7A 3SWJA 2FHQA 1T9MA 4N7RC 2QCKA 3R5RA 1G78A 2IMLA 2RDEA 2I02A 3U0IA 4HX6A 1XHNA 1G79A 2ARZA 4XHYA 5CHOA 3DMBA 2R0XA 3AMFA 1YLNA 1DNLA 3R5YA 1CI0A 4HMXA 4HMTA 3VYAA 3EC6A 2OL5A 3KYGA 3ZOCA 2A2JA 2ASFA 3F7EA 3KYFA 5BNCA 2R6VA 2E83A 1XXOA 2OU5A 3CP3A 3BPKA 3VY2A 2X1JA 2HHZA 4Y9IA 3H96A 1I0SA 4R82A 3U35A 1RZ0A 3K88A 2HQ7A 4ZKYA 1G77A 4XJ2A 3AWHA 3R5LA 2D36A 3BA3A 2RE7A 1WV4A 4HMUA 3PFTA 1W3RA 2ED4A 1RZ1A 4YWNA 3FKHA
chains in the Genus database with same CATH superfamily
1W3PA 3RH7A 1Y30A 3FGEA 1YOAA 3A20A 2Q9KA 4F07A 2I51A 3ZOFA 5CHEC 3A6QA 2HTDA 1WLIA 2L1TA 2K4QA 2FG9A 3VY5A 1NRGA 2ECUA 4YBNA 2HTIA 3ZOEA 2VPAA 4L82A 4HMVA 3K86A 4HMSA 4Z85A 1W3QA 2GJGA 1WLKA 2PTFA 3CB0A 3DNHA 3ZODA 5ESCA 3A6RA 2FURA 3R5WA 1G76A 1I0RA 1TY9A 3ZOGA 2D5MA 1EJEA 1USCA 2NR4A 1WGBA 3K87A 3B5MA 3HMZA 4MTKA 3TGVA 3DB0A 3NFWA 3ZOHA 4IRAA 1W3OA 3IN6A 2QEAA 2IG6A 1RFEA 1Y12A 2D38A 3V4HA 3HY8A 1FLMA 2IABA 2ECRA 5JABA 2HQ9A 3GASA 1W9AA 3R5PA 2X1KA 1AXJA 3E4VA 3U34A 3R5ZA 4QVBA 2D37A 3BNKA 2AQ6A 1USFA 4HKHA 4HMWA 1JNWA 3U5WA 1VL7A 3SWJA 2FHQA 4W64A 1T9MA 4N7RC 2QCKA 3R5RA 3HE1A 3EAAA 1G78A 2IMLA 2RDEA 2I02A 3U0IA 4HX6A 1XHNA 1G79A 2ARZA 4XHYA 5CHOA 3DMBA 2R0XA 3AMFA 1YLNA 1DNLA 3R5YA 1CI0A 4HMXA 4HMTA 3VYAA 3EC6A 2OL5A 3KYGA 3ZOCA 2A2JA 2ASFA 3F7EA 3KYFA 5BNCA 2R6VA 2E83A 1XXOA 2OU5A 3CP3A 3BPKA 3VY2A 2X1JA 2GUJA 2HHZA 4TV4A 4Y9IA 3H96A 1I0SA 4R82A 3U35A 4UHVA 1RZ0A 3K88A 2HQ7A 4ZKYA 1G77A 4XJ2A 3AWHA 3R5LA 2D36A 3BA3A 2P5ZX 2RE7A 1WV4A 4HMUA 3PFTA 1W3RA 2ED4A 1RZ1A 4YWNA 3FKHA
chains in the Genus database with same CATH topology
1W3PA 3RH7A 1Y30A 3FGEA 1YOAA 3A20A 2Q9KA 4F07A 2I51A 3ZOFA 5CHEC 3A6QA 2HTDA 1WLIA 2FG9A 3VY5A 1NRGA 2ECUA 4YBNA 2HTIA 3ZOEA 2VPAA 4L82A 4HMVA 3K86A 4HMSA 4Z85A 1W3QA 2GJGA 1WLKA 2PTFA 3CB0A 3DNHA 3ZODA 5ESCA 3A6RA 2FURA 3R5WA 1G76A 1I0RA 1TY9A 3ZOGA 2D5MA 1EJEA 1USCA 2NR4A 1WGBA 3K87A 3B5MA 3HMZA 3TGVA 3DB0A 3NFWA 3ZOHA 4IRAA 1W3OA 3IN6A 2QEAA 2IG6A 1RFEA 2D38A 3HY8A 1FLMA 2IABA 2ECRA 5JABA 2HQ9A 3GASA 1W9AA 3R5PA 2X1KA 1AXJA 3E4VA 3U34A 3R5ZA 4QVBA 2D37A 3BNKA 2AQ6A 1USFA 4HMWA 1JNWA 3U5WA 1VL7A 3SWJA 2FHQA 1T9MA 4N7RC 2QCKA 3R5RA 1G78A 2IMLA 2RDEA 2I02A 3U0IA 4HX6A 1XHNA 1G79A 2ARZA 4XHYA 5CHOA 3DMBA 2R0XA 3AMFA 1YLNA 1DNLA 3R5YA 1CI0A 4HMXA 4HMTA 3VYAA 3EC6A 2OL5A 3KYGA 3ZOCA 2A2JA 2ASFA 3F7EA 3KYFA 5BNCA 2R6VA 2E83A 1XXOA 2OU5A 3CP3A 3BPKA 3VY2A 2X1JA 2HHZA 4Y9IA 3H96A 1I0SA 4R82A 3U35A 1RZ0A 3K88A 2HQ7A 4ZKYA 1G77A 4XJ2A 3AWHA 3R5LA 2D36A 3BA3A 2RE7A 1WV4A 4HMUA 3PFTA 1W3RA 2ED4A 1RZ1A 4YWNA 3FKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3P A;  3RH7 A;  1Y30 A;  3FGE A;  1YOA A;  3A20 A;  2Q9K A;  4F07 A;  2I51 A;  3ZOF A;  5CHE C;  3A6Q A;  2HTD A;  1WLI A;  2FG9 A;  3VY5 A;  1NRG A;  2ECU A;  4YBN A;  2HTI A;  3ZOE A;  2VPA A;  4L82 A;  4HMV A;  3K86 A;  4HMS A;  4Z85 A;  1W3Q A;  2GJG A;  1WLK A;  2PTF A;  3CB0 A;  3DNH A;  3ZOD A;  5ESC A;  3A6R A;  2FUR A;  3R5W A;  1G76 A;  1I0R A;  1TY9 A;  3ZOG A;  2D5M A;  1EJE A;  1USC A;  2NR4 A;  1WGB A;  3K87 A;  3B5M A;  3HMZ A;  3TGV A;  3DB0 A;  3NFW A;  3ZOH A;  4IRA A;  1W3O A;  3IN6 A;  2QEA A;  2IG6 A;  1RFE A;  2D38 A;  3HY8 A;  1FLM A;  2IAB A;  2ECR A;  5JAB A;  2HQ9 A;  3GAS A;  1W9A A;  3R5P A;  2X1K A;  1AXJ A;  3E4V A;  3U34 A;  3R5Z A;  4QVB A;  2D37 A;  3BNK A;  2AQ6 A;  1USF A;  4HMW A;  1JNW A;  3U5W A;  1VL7 A;  3SWJ A;  2FHQ A;  1T9M A;  4N7R C;  2QCK A;  3R5R A;  1G78 A;  2IML A;  2RDE A;  2I02 A;  3U0I A;  4HX6 A;  1XHN A;  1G79 A;  2ARZ A;  4XHY A;  5CHO A;  3DMB A;  2R0X A;  3AMF A;  1YLN A;  1DNL A;  3R5Y A;  1CI0 A;  4HMX A;  4HMT A;  3VYA A;  3EC6 A;  2OL5 A;  3KYG A;  3ZOC A;  2A2J A;  2ASF A;  3F7E A;  3KYF A;  5BNC A;  2R6V A;  2E83 A;  1XXO A;  2OU5 A;  3CP3 A;  3BPK A;  3VY2 A;  2X1J A;  2HHZ A;  4Y9I A;  3H96 A;  1I0S A;  4R82 A;  3U35 A;  1RZ0 A;  3K88 A;  2HQ7 A;  4ZKY A;  1G77 A;  4XJ2 A;  3AWH A;  3R5L A;  2D36 A;  3BA3 A;  2RE7 A;  1WV4 A;  4HMU A;  3PFT A;  1W3R A;  2ED4 A;  1RZ1 A;  4YWN A;  3FKH A; 
#chains in the Genus database with same CATH topology
 1W3P A;  3RH7 A;  1Y30 A;  3FGE A;  1YOA A;  3A20 A;  2Q9K A;  4F07 A;  2I51 A;  3ZOF A;  5CHE C;  3A6Q A;  2HTD A;  1WLI A;  2L1T A;  2K4Q A;  2FG9 A;  3VY5 A;  1NRG A;  2ECU A;  4YBN A;  2HTI A;  3ZOE A;  2VPA A;  4L82 A;  4HMV A;  3K86 A;  4HMS A;  4Z85 A;  1W3Q A;  2GJG A;  1WLK A;  2PTF A;  3CB0 A;  3DNH A;  3ZOD A;  5ESC A;  3A6R A;  2FUR A;  3R5W A;  1G76 A;  1I0R A;  1TY9 A;  3ZOG A;  2D5M A;  1EJE A;  1USC A;  2NR4 A;  1WGB A;  3K87 A;  3B5M A;  3HMZ A;  4MTK A;  3TGV A;  3DB0 A;  3NFW A;  3ZOH A;  4IRA A;  1W3O A;  3IN6 A;  2QEA A;  2IG6 A;  1RFE A;  1Y12 A;  2D38 A;  3V4H A;  3HY8 A;  1FLM A;  2IAB A;  2ECR A;  5JAB A;  2HQ9 A;  3GAS A;  1W9A A;  3R5P A;  2X1K A;  1AXJ A;  3E4V A;  3U34 A;  3R5Z A;  4QVB A;  2D37 A;  3BNK A;  2AQ6 A;  1USF A;  4HKH A;  4HMW A;  1JNW A;  3U5W A;  1VL7 A;  3SWJ A;  2FHQ A;  4W64 A;  1T9M A;  4N7R C;  2QCK A;  3R5R A;  3HE1 A;  3EAA A;  1G78 A;  2IML A;  2RDE A;  2I02 A;  3U0I A;  4HX6 A;  1XHN A;  1G79 A;  2ARZ A;  4XHY A;  5CHO A;  3DMB A;  2R0X A;  3AMF A;  1YLN A;  1DNL A;  3R5Y A;  1CI0 A;  4HMX A;  4HMT A;  3VYA A;  3EC6 A;  2OL5 A;  3KYG A;  3ZOC A;  2A2J A;  2ASF A;  3F7E A;  3KYF A;  5BNC A;  2R6V A;  2E83 A;  1XXO A;  2OU5 A;  3CP3 A;  3BPK A;  3VY2 A;  2X1J A;  2GUJ A;  2HHZ A;  4TV4 A;  4Y9I A;  3H96 A;  1I0S A;  4R82 A;  3U35 A;  4UHV A;  1RZ0 A;  3K88 A;  2HQ7 A;  4ZKY A;  1G77 A;  4XJ2 A;  3AWH A;  3R5L A;  2D36 A;  3BA3 A;  2P5Z X;  2RE7 A;  1WV4 A;  4HMU A;  3PFT A;  1W3R A;  2ED4 A;  1RZ1 A;  4YWN A;  3FKH A; 
#chains in the Genus database with same CATH homology
 1W3P A;  3RH7 A;  1Y30 A;  3FGE A;  1YOA A;  3A20 A;  2Q9K A;  4F07 A;  2I51 A;  3ZOF A;  5CHE C;  3A6Q A;  2HTD A;  1WLI A;  2FG9 A;  3VY5 A;  1NRG A;  2ECU A;  4YBN A;  2HTI A;  3ZOE A;  2VPA A;  4L82 A;  4HMV A;  3K86 A;  4HMS A;  4Z85 A;  1W3Q A;  2GJG A;  1WLK A;  2PTF A;  3CB0 A;  3DNH A;  3ZOD A;  5ESC A;  3A6R A;  2FUR A;  3R5W A;  1G76 A;  1I0R A;  1TY9 A;  3ZOG A;  2D5M A;  1EJE A;  1USC A;  2NR4 A;  1WGB A;  3K87 A;  3B5M A;  3HMZ A;  3TGV A;  3DB0 A;  3NFW A;  3ZOH A;  4IRA A;  1W3O A;  3IN6 A;  2QEA A;  2IG6 A;  1RFE A;  2D38 A;  3HY8 A;  1FLM A;  2IAB A;  2ECR A;  5JAB A;  2HQ9 A;  3GAS A;  1W9A A;  3R5P A;  2X1K A;  1AXJ A;  3E4V A;  3U34 A;  3R5Z A;  4QVB A;  2D37 A;  3BNK A;  2AQ6 A;  1USF A;  4HMW A;  1JNW A;  3U5W A;  1VL7 A;  3SWJ A;  2FHQ A;  1T9M A;  4N7R C;  2QCK A;  3R5R A;  1G78 A;  2IML A;  2RDE A;  2I02 A;  3U0I A;  4HX6 A;  1XHN A;  1G79 A;  2ARZ A;  4XHY A;  5CHO A;  3DMB A;  2R0X A;  3AMF A;  1YLN A;  1DNL A;  3R5Y A;  1CI0 A;  4HMX A;  4HMT A;  3VYA A;  3EC6 A;  2OL5 A;  3KYG A;  3ZOC A;  2A2J A;  2ASF A;  3F7E A;  3KYF A;  5BNC A;  2R6V A;  2E83 A;  1XXO A;  2OU5 A;  3CP3 A;  3BPK A;  3VY2 A;  2X1J A;  2HHZ A;  4Y9I A;  3H96 A;  1I0S A;  4R82 A;  3U35 A;  1RZ0 A;  3K88 A;  2HQ7 A;  4ZKY A;  1G77 A;  4XJ2 A;  3AWH A;  3R5L A;  2D36 A;  3BA3 A;  2RE7 A;  1WV4 A;  4HMU A;  3PFT A;  1W3R A;  2ED4 A;  1RZ1 A;  4YWN A;  3FKH A; 
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