4L82A

Structure of a putative oxidoreductase from rickettsia felis
Total Genus 41
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
156
structure length
156
Chain Sequence
VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S6 (69-74)TVIII1 (15-18)S1 (19-20)S3 (31-37)S2 (22-28)TIV1 (27-30)EMPTYTI3 (76-79)AH3 (80-87)S5 (49-55)TI1 (37-40)TVIII2 (44-47)S4 (41-44)S10 (130-142)TII'1 (127-130)TIV2 (45-48)TI2 (55-58)AH2 (60-66)TII1 (110-113)TIV5 (103-106)S8 (108-110)S11 (149-152)TIV4 (90-93)TI4 (92-95)TI5 (94-97)TI6 (102-105)S7 (99-101)S9 (115-127)TIV6 (151-154)AH1 (7-15)S12 (155-158)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Rickettsia felis
publication title Structure of a putative oxidoreductase from Rickettsia felis
rcsb
molecule keywords RifeA.00250.a
total genus 41
structure length 156
sequence length 156
chains with identical sequence B, C, D
ec nomenclature ec 1.-.-.-:
pdb deposition date 2013-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4l82A00
2RE7A 2R0XA 1WLKA 3FKHA 3U34A 1USFA 3VY5A 5JABA 4HMXA 4XJ2A 3BA3A 3U35A 5CHOA 1DNLA 2ARZA 2AQ6A 3KYGA 1RFEA 3ZOEA 2X1JA 2PTFA 2Q9KA 3R5ZA 4HMVA 3H96A 2D5MA 2NR4A 3A20A 2OU5A 1TY9A 2OL5A 3EC6A 1JNWA 2HTDA 1I0SA 3ZOFA 3SWJA 1T9MA 2I51A 1FLMA 1AXJA 2X1KA 1YLNA 1G77A 3R5LA 4HMTA 3AMFA 1G78A 1I0RA 2QEAA 3DNHA 1WV4A 3BNKA 3HY8A 3ZODA 4ZKYA 2FG9A 2IG6A 4QVBA 4L82A 1RZ1A 2ECRA 2VPAA 4IRAA 2RDEA 3PFTA 2A2JA 3B5MA 2IABA 2D36A 2D38A 3U5WA 1WGBA 5CHEC 1RZ0A 3IN6A 3TGVA 2ED4A 4R82A 3K86A 2HQ7A 1EJEA 2HTIA 3ZOGA 4N7RC 3U0IA 1XXOA 3HMZA 4F07A 4Z85A 3VYAA 3CB0A 4XHYA 3A6RA 2D37A 2R6VA 1VL7A 2FURA 1NRGA 1W3QA 2HQ9A 3FGEA 3K87A 1W3PA 4HMUA 4YBNA 2IMLA 1XHNA 1G76A 3DMBA 3VY2A 3R5PA 3BPKA 3R5YA 3R5WA 1W9AA 4HMSA 2FHQA 3AWHA 3KYFA 4HX6A 1W3RA 2ECUA 3GASA 1YOAA 3K88A 5BNCA 1G79A 4YWNA 1WLIA 1CI0A 4HMWA 3A6QA 3RH7A 2ASFA 3NFWA 3F7EA 2HHZA 3DB0A 1USCA 1W3OA 2I02A 2QCKA 2E83A 3E4VA 4Y9IA 5ESCA 3ZOCA 1Y30A 2GJGA 3R5RA 3ZOHA 3CP3A
chains in the Genus database with same CATH superfamily
2RE7A 2R0XA 2P5ZX 1WLKA 3FKHA 3U34A 1USFA 3VY5A 5JABA 4HMXA 4HKHA 3EAAA 4XJ2A 3BA3A 3U35A 5CHOA 1DNLA 2ARZA 2AQ6A 3KYGA 1RFEA 3ZOEA 3V4HA 2X1JA 2PTFA 2Q9KA 3R5ZA 4HMVA 3H96A 2D5MA 2NR4A 3A20A 2OU5A 1TY9A 2OL5A 2GUJA 3EC6A 1JNWA 2HTDA 1I0SA 3ZOFA 3SWJA 1T9MA 4UHVA 2I51A 1FLMA 1AXJA 2X1KA 1YLNA 1G77A 3HE1A 3R5LA 4HMTA 3AMFA 1G78A 1I0RA 2QEAA 3DNHA 1WV4A 3BNKA 3HY8A 3ZODA 4ZKYA 2FG9A 2IG6A 4QVBA 4L82A 1RZ1A 2ECRA 2VPAA 4IRAA 2RDEA 3PFTA 2A2JA 3B5MA 2IABA 2D36A 2D38A 3U5WA 4W64A 1WGBA 5CHEC 1RZ0A 3IN6A 3TGVA 2ED4A 4R82A 3K86A 2HQ7A 1EJEA 2HTIA 3ZOGA 4N7RC 3U0IA 1XXOA 4TV4A 3HMZA 4F07A 4Z85A 3VYAA 3CB0A 4XHYA 3A6RA 2D37A 2R6VA 1VL7A 2FURA 2L1TA 1NRGA 1W3QA 2HQ9A 3FGEA 3K87A 1W3PA 4HMUA 4YBNA 4MTKA 2IMLA 1XHNA 1G76A 3DMBA 3VY2A 3R5PA 3BPKA 3R5YA 3R5WA 1W9AA 1Y12A 4HMSA 2FHQA 3AWHA 3KYFA 4HX6A 1W3RA 2ECUA 3GASA 1YOAA 3K88A 5BNCA 1G79A 4YWNA 1WLIA 1CI0A 4HMWA 3A6QA 3RH7A 2K4QA 2ASFA 3NFWA 3F7EA 2HHZA 3DB0A 1USCA 1W3OA 2I02A 2QCKA 2E83A 3E4VA 4Y9IA 5ESCA 3ZOCA 1Y30A 2GJGA 3R5RA 3ZOHA 3CP3A
chains in the Genus database with same CATH topology
2RE7A 2R0XA 1WLKA 3FKHA 3U34A 1USFA 3VY5A 5JABA 4HMXA 4XJ2A 3BA3A 3U35A 5CHOA 1DNLA 2ARZA 2AQ6A 3KYGA 1RFEA 3ZOEA 2X1JA 2PTFA 2Q9KA 3R5ZA 4HMVA 3H96A 2D5MA 2NR4A 3A20A 2OU5A 1TY9A 2OL5A 3EC6A 1JNWA 2HTDA 1I0SA 3ZOFA 3SWJA 1T9MA 2I51A 1FLMA 1AXJA 2X1KA 1YLNA 1G77A 3R5LA 4HMTA 3AMFA 1G78A 1I0RA 2QEAA 3DNHA 1WV4A 3BNKA 3HY8A 3ZODA 4ZKYA 2FG9A 2IG6A 4QVBA 4L82A 1RZ1A 2ECRA 2VPAA 4IRAA 2RDEA 3PFTA 2A2JA 3B5MA 2IABA 2D36A 2D38A 3U5WA 1WGBA 5CHEC 1RZ0A 3IN6A 3TGVA 2ED4A 4R82A 3K86A 2HQ7A 1EJEA 2HTIA 3ZOGA 4N7RC 3U0IA 1XXOA 3HMZA 4F07A 4Z85A 3VYAA 3CB0A 4XHYA 3A6RA 2D37A 2R6VA 1VL7A 2FURA 1NRGA 1W3QA 2HQ9A 3FGEA 3K87A 1W3PA 4HMUA 4YBNA 2IMLA 1XHNA 1G76A 3DMBA 3VY2A 3R5PA 3BPKA 3R5YA 3R5WA 1W9AA 4HMSA 2FHQA 3AWHA 3KYFA 4HX6A 1W3RA 2ECUA 3GASA 1YOAA 3K88A 5BNCA 1G79A 4YWNA 1WLIA 1CI0A 4HMWA 3A6QA 3RH7A 2ASFA 3NFWA 3F7EA 2HHZA 3DB0A 1USCA 1W3OA 2I02A 2QCKA 2E83A 3E4VA 4Y9IA 5ESCA 3ZOCA 1Y30A 2GJGA 3R5RA 3ZOHA 3CP3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RE7 A;  2R0X A;  1WLK A;  3FKH A;  3U34 A;  1USF A;  3VY5 A;  5JAB A;  4HMX A;  4XJ2 A;  3BA3 A;  3U35 A;  5CHO A;  1DNL A;  2ARZ A;  2AQ6 A;  3KYG A;  1RFE A;  3ZOE A;  2X1J A;  2PTF A;  2Q9K A;  3R5Z A;  4HMV A;  3H96 A;  2D5M A;  2NR4 A;  3A20 A;  2OU5 A;  1TY9 A;  2OL5 A;  3EC6 A;  1JNW A;  2HTD A;  1I0S A;  3ZOF A;  3SWJ A;  1T9M A;  2I51 A;  1FLM A;  1AXJ A;  2X1K A;  1YLN A;  1G77 A;  3R5L A;  4HMT A;  3AMF A;  1G78 A;  1I0R A;  2QEA A;  3DNH A;  1WV4 A;  3BNK A;  3HY8 A;  3ZOD A;  4ZKY A;  2FG9 A;  2IG6 A;  4QVB A;  4L82 A;  1RZ1 A;  2ECR A;  2VPA A;  4IRA A;  2RDE A;  3PFT A;  2A2J A;  3B5M A;  2IAB A;  2D36 A;  2D38 A;  3U5W A;  1WGB A;  5CHE C;  1RZ0 A;  3IN6 A;  3TGV A;  2ED4 A;  4R82 A;  3K86 A;  2HQ7 A;  1EJE A;  2HTI A;  3ZOG A;  4N7R C;  3U0I A;  1XXO A;  3HMZ A;  4F07 A;  4Z85 A;  3VYA A;  3CB0 A;  4XHY A;  3A6R A;  2D37 A;  2R6V A;  1VL7 A;  2FUR A;  1NRG A;  1W3Q A;  2HQ9 A;  3FGE A;  3K87 A;  1W3P A;  4HMU A;  4YBN A;  2IML A;  1XHN A;  1G76 A;  3DMB A;  3VY2 A;  3R5P A;  3BPK A;  3R5Y A;  3R5W A;  1W9A A;  4HMS A;  2FHQ A;  3AWH A;  3KYF A;  4HX6 A;  1W3R A;  2ECU A;  3GAS A;  1YOA A;  3K88 A;  5BNC A;  1G79 A;  4YWN A;  1WLI A;  1CI0 A;  4HMW A;  3A6Q A;  3RH7 A;  2ASF A;  3NFW A;  3F7E A;  2HHZ A;  3DB0 A;  1USC A;  1W3O A;  2I02 A;  2QCK A;  2E83 A;  3E4V A;  4Y9I A;  5ESC A;  3ZOC A;  1Y30 A;  2GJG A;  3R5R A;  3ZOH A;  3CP3 A; 
#chains in the Genus database with same CATH topology
 2RE7 A;  2R0X A;  2P5Z X;  1WLK A;  3FKH A;  3U34 A;  1USF A;  3VY5 A;  5JAB A;  4HMX A;  4HKH A;  3EAA A;  4XJ2 A;  3BA3 A;  3U35 A;  5CHO A;  1DNL A;  2ARZ A;  2AQ6 A;  3KYG A;  1RFE A;  3ZOE A;  3V4H A;  2X1J A;  2PTF A;  2Q9K A;  3R5Z A;  4HMV A;  3H96 A;  2D5M A;  2NR4 A;  3A20 A;  2OU5 A;  1TY9 A;  2OL5 A;  2GUJ A;  3EC6 A;  1JNW A;  2HTD A;  1I0S A;  3ZOF A;  3SWJ A;  1T9M A;  4UHV A;  2I51 A;  1FLM A;  1AXJ A;  2X1K A;  1YLN A;  1G77 A;  3HE1 A;  3R5L A;  4HMT A;  3AMF A;  1G78 A;  1I0R A;  2QEA A;  3DNH A;  1WV4 A;  3BNK A;  3HY8 A;  3ZOD A;  4ZKY A;  2FG9 A;  2IG6 A;  4QVB A;  4L82 A;  1RZ1 A;  2ECR A;  2VPA A;  4IRA A;  2RDE A;  3PFT A;  2A2J A;  3B5M A;  2IAB A;  2D36 A;  2D38 A;  3U5W A;  4W64 A;  1WGB A;  5CHE C;  1RZ0 A;  3IN6 A;  3TGV A;  2ED4 A;  4R82 A;  3K86 A;  2HQ7 A;  1EJE A;  2HTI A;  3ZOG A;  4N7R C;  3U0I A;  1XXO A;  4TV4 A;  3HMZ A;  4F07 A;  4Z85 A;  3VYA A;  3CB0 A;  4XHY A;  3A6R A;  2D37 A;  2R6V A;  1VL7 A;  2FUR A;  2L1T A;  1NRG A;  1W3Q A;  2HQ9 A;  3FGE A;  3K87 A;  1W3P A;  4HMU A;  4YBN A;  4MTK A;  2IML A;  1XHN A;  1G76 A;  3DMB A;  3VY2 A;  3R5P A;  3BPK A;  3R5Y A;  3R5W A;  1W9A A;  1Y12 A;  4HMS A;  2FHQ A;  3AWH A;  3KYF A;  4HX6 A;  1W3R A;  2ECU A;  3GAS A;  1YOA A;  3K88 A;  5BNC A;  1G79 A;  4YWN A;  1WLI A;  1CI0 A;  4HMW A;  3A6Q A;  3RH7 A;  2K4Q A;  2ASF A;  3NFW A;  3F7E A;  2HHZ A;  3DB0 A;  1USC A;  1W3O A;  2I02 A;  2QCK A;  2E83 A;  3E4V A;  4Y9I A;  5ESC A;  3ZOC A;  1Y30 A;  2GJG A;  3R5R A;  3ZOH A;  3CP3 A; 
#chains in the Genus database with same CATH homology
 2RE7 A;  2R0X A;  1WLK A;  3FKH A;  3U34 A;  1USF A;  3VY5 A;  5JAB A;  4HMX A;  4XJ2 A;  3BA3 A;  3U35 A;  5CHO A;  1DNL A;  2ARZ A;  2AQ6 A;  3KYG A;  1RFE A;  3ZOE A;  2X1J A;  2PTF A;  2Q9K A;  3R5Z A;  4HMV A;  3H96 A;  2D5M A;  2NR4 A;  3A20 A;  2OU5 A;  1TY9 A;  2OL5 A;  3EC6 A;  1JNW A;  2HTD A;  1I0S A;  3ZOF A;  3SWJ A;  1T9M A;  2I51 A;  1FLM A;  1AXJ A;  2X1K A;  1YLN A;  1G77 A;  3R5L A;  4HMT A;  3AMF A;  1G78 A;  1I0R A;  2QEA A;  3DNH A;  1WV4 A;  3BNK A;  3HY8 A;  3ZOD A;  4ZKY A;  2FG9 A;  2IG6 A;  4QVB A;  4L82 A;  1RZ1 A;  2ECR A;  2VPA A;  4IRA A;  2RDE A;  3PFT A;  2A2J A;  3B5M A;  2IAB A;  2D36 A;  2D38 A;  3U5W A;  1WGB A;  5CHE C;  1RZ0 A;  3IN6 A;  3TGV A;  2ED4 A;  4R82 A;  3K86 A;  2HQ7 A;  1EJE A;  2HTI A;  3ZOG A;  4N7R C;  3U0I A;  1XXO A;  3HMZ A;  4F07 A;  4Z85 A;  3VYA A;  3CB0 A;  4XHY A;  3A6R A;  2D37 A;  2R6V A;  1VL7 A;  2FUR A;  1NRG A;  1W3Q A;  2HQ9 A;  3FGE A;  3K87 A;  1W3P A;  4HMU A;  4YBN A;  2IML A;  1XHN A;  1G76 A;  3DMB A;  3VY2 A;  3R5P A;  3BPK A;  3R5Y A;  3R5W A;  1W9A A;  4HMS A;  2FHQ A;  3AWH A;  3KYF A;  4HX6 A;  1W3R A;  2ECU A;  3GAS A;  1YOA A;  3K88 A;  5BNC A;  1G79 A;  4YWN A;  1WLI A;  1CI0 A;  4HMW A;  3A6Q A;  3RH7 A;  2ASF A;  3NFW A;  3F7E A;  2HHZ A;  3DB0 A;  1USC A;  1W3O A;  2I02 A;  2QCK A;  2E83 A;  3E4V A;  4Y9I A;  5ESC A;  3ZOC A;  1Y30 A;  2GJG A;  3R5R A;  3ZOH A;  3CP3 A; 
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similar chains in the Genus database (?% sequence similarity)
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