4L82A

Structure of a putative oxidoreductase from rickettsia felis
Total Genus 41
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
156
structure length
156
Chain Sequence
VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S6 (69-74)TVIII1 (15-18)S1 (19-20)S3 (31-37)S2 (22-28)TIV1 (27-30)EMPTYTI3 (76-79)AH3 (80-87)S5 (49-55)TI1 (37-40)TVIII2 (44-47)S4 (41-44)S10 (130-142)TII'1 (127-130)TIV2 (45-48)TI2 (55-58)AH2 (60-66)TII1 (110-113)TIV5 (103-106)S8 (108-110)S11 (149-152)TIV4 (90-93)TI4 (92-95)TI5 (94-97)TI6 (102-105)S7 (99-101)S9 (115-127)TIV6 (151-154)AH1 (7-15)S12 (155-158)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Rickettsia felis
publication title Structure of a putative oxidoreductase from Rickettsia felis
rcsb
molecule keywords RifeA.00250.a
total genus 41
structure length 156
sequence length 156
chains with identical sequence B, C, D
ec nomenclature ec 1.-.-.-:
pdb deposition date 2013-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4l82A00
1W3OA 2ASFA 1Y30A 2ED4A 2HQ7A 3AMFA 3BNKA 3ZOEA 4XJ2A 1USCA 4Y9IA 3ZOHA 2D36A 4HMSA 1EJEA 2NR4A 3VYAA 2X1KA 1G77A 3SWJA 2A2JA 3R5PA 3A20A 2FG9A 3CB0A 3H96A 3A6QA 1WLIA 2FHQA 2QEAA 2ECRA 2E83A 3ZOGA 1YOAA 3R5LA 3GASA 3RH7A 1CI0A 4R82A 1WGBA 3AWHA 2OU5A 2ARZA 3EC6A 4HMXA 5CHOA 3ZOFA 3BPKA 3KYFA 1TY9A 1WV4A 2GJGA 2RE7A 2X1JA 2AQ6A 1JNWA 2HTDA 1W3PA 2ECUA 3K86A 4HMUA 4F07A 4HX6A 1AXJA 3R5WA 3R5YA 3R5ZA 1XXOA 2PTFA 3DB0A 1USFA 3ZODA 3A6RA 2HQ9A 3E4VA 2OL5A 1YLNA 3DNHA 2R0XA 3R5RA 3VY5A 1VL7A 2HHZA 3CP3A 3ZOCA 3U0IA 2VPAA 1T9MA 2RDEA 4Z85A 2HTIA 4YWNA 3FGEA 4HMWA 2IMLA 3U5WA 2I02A 3HMZA 3U35A 1G79A 3NFWA 1I0SA 3FKHA 5JABA 5BNCA 1WLKA 2D5MA 2IG6A 1W3RA 1RZ1A 5CHEC 4XHYA 1XHNA 3KYGA 3VY2A 2FURA 3DMBA 3HY8A 5ESCA 1FLMA 1W3QA 1G78A 1RFEA 4YBNA 3B5MA 2QCKA 1I0RA 4HMVA 1W9AA 4IRAA 3U34A 3PFTA 3F7EA 2D38A 3K87A 4ZKYA 2Q9KA 1RZ0A 4L82A 2R6VA 4QVBA 1NRGA 2D37A 2I51A 4HMTA 1DNLA 3IN6A 3TGVA 3K88A 4N7RC 3BA3A 1G76A 2IABA
chains in the Genus database with same CATH superfamily
1W3OA 2ASFA 1Y30A 2ED4A 2HQ7A 3AMFA 3BNKA 3ZOEA 4XJ2A 1USCA 4Y9IA 3ZOHA 2D36A 4HMSA 1EJEA 2NR4A 3VYAA 2X1KA 1G77A 3SWJA 2A2JA 3R5PA 3A20A 2FG9A 3CB0A 3H96A 3A6QA 1WLIA 2FHQA 2QEAA 2ECRA 2E83A 3ZOGA 1YOAA 3R5LA 3GASA 3RH7A 1CI0A 4R82A 1WGBA 3AWHA 2OU5A 2ARZA 3EC6A 4HMXA 5CHOA 3ZOFA 3BPKA 3KYFA 1TY9A 1WV4A 2GJGA 2RE7A 2X1JA 4TV4A 4UHVA 2AQ6A 1JNWA 2HTDA 1W3PA 2ECUA 3K86A 4HMUA 4F07A 2L1TA 4HX6A 3EAAA 1AXJA 3R5WA 3R5YA 3R5ZA 1XXOA 2PTFA 3DB0A 1USFA 3ZODA 3A6RA 2HQ9A 3E4VA 2OL5A 4MTKA 1YLNA 3DNHA 2R0XA 3R5RA 3VY5A 1VL7A 2HHZA 2K4QA 3CP3A 3ZOCA 3U0IA 2VPAA 4W64A 1T9MA 2RDEA 4Z85A 2HTIA 4YWNA 3FGEA 4HMWA 2IMLA 3U5WA 2I02A 3HMZA 3U35A 2P5ZX 1G79A 3NFWA 1I0SA 3FKHA 5JABA 5BNCA 1WLKA 2D5MA 2IG6A 1W3RA 1RZ1A 5CHEC 4XHYA 1XHNA 1Y12A 3KYGA 3VY2A 2FURA 3DMBA 3HY8A 5ESCA 1FLMA 1W3QA 1G78A 1RFEA 4YBNA 3B5MA 2QCKA 1I0RA 3HE1A 4HMVA 1W9AA 4IRAA 3U34A 3PFTA 3F7EA 2D38A 3K87A 4ZKYA 2Q9KA 1RZ0A 4L82A 2R6VA 4QVBA 1NRGA 2D37A 4HKHA 2I51A 4HMTA 1DNLA 2GUJA 3IN6A 3TGVA 3V4HA 3K88A 4N7RC 3BA3A 1G76A 2IABA
chains in the Genus database with same CATH topology
1W3OA 2ASFA 1Y30A 2ED4A 2HQ7A 3AMFA 3BNKA 3ZOEA 4XJ2A 1USCA 4Y9IA 3ZOHA 2D36A 4HMSA 1EJEA 2NR4A 3VYAA 2X1KA 1G77A 3SWJA 2A2JA 3R5PA 3A20A 2FG9A 3CB0A 3H96A 3A6QA 1WLIA 2FHQA 2QEAA 2ECRA 2E83A 3ZOGA 1YOAA 3R5LA 3GASA 3RH7A 1CI0A 4R82A 1WGBA 3AWHA 2OU5A 2ARZA 3EC6A 4HMXA 5CHOA 3ZOFA 3BPKA 3KYFA 1TY9A 1WV4A 2GJGA 2RE7A 2X1JA 2AQ6A 1JNWA 2HTDA 1W3PA 2ECUA 3K86A 4HMUA 4F07A 4HX6A 1AXJA 3R5WA 3R5YA 3R5ZA 1XXOA 2PTFA 3DB0A 1USFA 3ZODA 3A6RA 2HQ9A 3E4VA 2OL5A 1YLNA 3DNHA 2R0XA 3R5RA 3VY5A 1VL7A 2HHZA 3CP3A 3ZOCA 3U0IA 2VPAA 1T9MA 2RDEA 4Z85A 2HTIA 4YWNA 3FGEA 4HMWA 2IMLA 3U5WA 2I02A 3HMZA 3U35A 1G79A 3NFWA 1I0SA 3FKHA 5JABA 5BNCA 1WLKA 2D5MA 2IG6A 1W3RA 1RZ1A 5CHEC 4XHYA 1XHNA 3KYGA 3VY2A 2FURA 3DMBA 3HY8A 5ESCA 1FLMA 1W3QA 1G78A 1RFEA 4YBNA 3B5MA 2QCKA 1I0RA 4HMVA 1W9AA 4IRAA 3U34A 3PFTA 3F7EA 2D38A 3K87A 4ZKYA 2Q9KA 1RZ0A 4L82A 2R6VA 4QVBA 1NRGA 2D37A 2I51A 4HMTA 1DNLA 3IN6A 3TGVA 3K88A 4N7RC 3BA3A 1G76A 2IABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3O A;  2ASF A;  1Y30 A;  2ED4 A;  2HQ7 A;  3AMF A;  3BNK A;  3ZOE A;  4XJ2 A;  1USC A;  4Y9I A;  3ZOH A;  2D36 A;  4HMS A;  1EJE A;  2NR4 A;  3VYA A;  2X1K A;  1G77 A;  3SWJ A;  2A2J A;  3R5P A;  3A20 A;  2FG9 A;  3CB0 A;  3H96 A;  3A6Q A;  1WLI A;  2FHQ A;  2QEA A;  2ECR A;  2E83 A;  3ZOG A;  1YOA A;  3R5L A;  3GAS A;  3RH7 A;  1CI0 A;  4R82 A;  1WGB A;  3AWH A;  2OU5 A;  2ARZ A;  3EC6 A;  4HMX A;  5CHO A;  3ZOF A;  3BPK A;  3KYF A;  1TY9 A;  1WV4 A;  2GJG A;  2RE7 A;  2X1J A;  2AQ6 A;  1JNW A;  2HTD A;  1W3P A;  2ECU A;  3K86 A;  4HMU A;  4F07 A;  4HX6 A;  1AXJ A;  3R5W A;  3R5Y A;  3R5Z A;  1XXO A;  2PTF A;  3DB0 A;  1USF A;  3ZOD A;  3A6R A;  2HQ9 A;  3E4V A;  2OL5 A;  1YLN A;  3DNH A;  2R0X A;  3R5R A;  3VY5 A;  1VL7 A;  2HHZ A;  3CP3 A;  3ZOC A;  3U0I A;  2VPA A;  1T9M A;  2RDE A;  4Z85 A;  2HTI A;  4YWN A;  3FGE A;  4HMW A;  2IML A;  3U5W A;  2I02 A;  3HMZ A;  3U35 A;  1G79 A;  3NFW A;  1I0S A;  3FKH A;  5JAB A;  5BNC A;  1WLK A;  2D5M A;  2IG6 A;  1W3R A;  1RZ1 A;  5CHE C;  4XHY A;  1XHN A;  3KYG A;  3VY2 A;  2FUR A;  3DMB A;  3HY8 A;  5ESC A;  1FLM A;  1W3Q A;  1G78 A;  1RFE A;  4YBN A;  3B5M A;  2QCK A;  1I0R A;  4HMV A;  1W9A A;  4IRA A;  3U34 A;  3PFT A;  3F7E A;  2D38 A;  3K87 A;  4ZKY A;  2Q9K A;  1RZ0 A;  4L82 A;  2R6V A;  4QVB A;  1NRG A;  2D37 A;  2I51 A;  4HMT A;  1DNL A;  3IN6 A;  3TGV A;  3K88 A;  4N7R C;  3BA3 A;  1G76 A;  2IAB A; 
#chains in the Genus database with same CATH topology
 1W3O A;  2ASF A;  1Y30 A;  2ED4 A;  2HQ7 A;  3AMF A;  3BNK A;  3ZOE A;  4XJ2 A;  1USC A;  4Y9I A;  3ZOH A;  2D36 A;  4HMS A;  1EJE A;  2NR4 A;  3VYA A;  2X1K A;  1G77 A;  3SWJ A;  2A2J A;  3R5P A;  3A20 A;  2FG9 A;  3CB0 A;  3H96 A;  3A6Q A;  1WLI A;  2FHQ A;  2QEA A;  2ECR A;  2E83 A;  3ZOG A;  1YOA A;  3R5L A;  3GAS A;  3RH7 A;  1CI0 A;  4R82 A;  1WGB A;  3AWH A;  2OU5 A;  2ARZ A;  3EC6 A;  4HMX A;  5CHO A;  3ZOF A;  3BPK A;  3KYF A;  1TY9 A;  1WV4 A;  2GJG A;  2RE7 A;  2X1J A;  4TV4 A;  4UHV A;  2AQ6 A;  1JNW A;  2HTD A;  1W3P A;  2ECU A;  3K86 A;  4HMU A;  4F07 A;  2L1T A;  4HX6 A;  3EAA A;  1AXJ A;  3R5W A;  3R5Y A;  3R5Z A;  1XXO A;  2PTF A;  3DB0 A;  1USF A;  3ZOD A;  3A6R A;  2HQ9 A;  3E4V A;  2OL5 A;  4MTK A;  1YLN A;  3DNH A;  2R0X A;  3R5R A;  3VY5 A;  1VL7 A;  2HHZ A;  2K4Q A;  3CP3 A;  3ZOC A;  3U0I A;  2VPA A;  4W64 A;  1T9M A;  2RDE A;  4Z85 A;  2HTI A;  4YWN A;  3FGE A;  4HMW A;  2IML A;  3U5W A;  2I02 A;  3HMZ A;  3U35 A;  2P5Z X;  1G79 A;  3NFW A;  1I0S A;  3FKH A;  5JAB A;  5BNC A;  1WLK A;  2D5M A;  2IG6 A;  1W3R A;  1RZ1 A;  5CHE C;  4XHY A;  1XHN A;  1Y12 A;  3KYG A;  3VY2 A;  2FUR A;  3DMB A;  3HY8 A;  5ESC A;  1FLM A;  1W3Q A;  1G78 A;  1RFE A;  4YBN A;  3B5M A;  2QCK A;  1I0R A;  3HE1 A;  4HMV A;  1W9A A;  4IRA A;  3U34 A;  3PFT A;  3F7E A;  2D38 A;  3K87 A;  4ZKY A;  2Q9K A;  1RZ0 A;  4L82 A;  2R6V A;  4QVB A;  1NRG A;  2D37 A;  4HKH A;  2I51 A;  4HMT A;  1DNL A;  2GUJ A;  3IN6 A;  3TGV A;  3V4H A;  3K88 A;  4N7R C;  3BA3 A;  1G76 A;  2IAB A; 
#chains in the Genus database with same CATH homology
 1W3O A;  2ASF A;  1Y30 A;  2ED4 A;  2HQ7 A;  3AMF A;  3BNK A;  3ZOE A;  4XJ2 A;  1USC A;  4Y9I A;  3ZOH A;  2D36 A;  4HMS A;  1EJE A;  2NR4 A;  3VYA A;  2X1K A;  1G77 A;  3SWJ A;  2A2J A;  3R5P A;  3A20 A;  2FG9 A;  3CB0 A;  3H96 A;  3A6Q A;  1WLI A;  2FHQ A;  2QEA A;  2ECR A;  2E83 A;  3ZOG A;  1YOA A;  3R5L A;  3GAS A;  3RH7 A;  1CI0 A;  4R82 A;  1WGB A;  3AWH A;  2OU5 A;  2ARZ A;  3EC6 A;  4HMX A;  5CHO A;  3ZOF A;  3BPK A;  3KYF A;  1TY9 A;  1WV4 A;  2GJG A;  2RE7 A;  2X1J A;  2AQ6 A;  1JNW A;  2HTD A;  1W3P A;  2ECU A;  3K86 A;  4HMU A;  4F07 A;  4HX6 A;  1AXJ A;  3R5W A;  3R5Y A;  3R5Z A;  1XXO A;  2PTF A;  3DB0 A;  1USF A;  3ZOD A;  3A6R A;  2HQ9 A;  3E4V A;  2OL5 A;  1YLN A;  3DNH A;  2R0X A;  3R5R A;  3VY5 A;  1VL7 A;  2HHZ A;  3CP3 A;  3ZOC A;  3U0I A;  2VPA A;  1T9M A;  2RDE A;  4Z85 A;  2HTI A;  4YWN A;  3FGE A;  4HMW A;  2IML A;  3U5W A;  2I02 A;  3HMZ A;  3U35 A;  1G79 A;  3NFW A;  1I0S A;  3FKH A;  5JAB A;  5BNC A;  1WLK A;  2D5M A;  2IG6 A;  1W3R A;  1RZ1 A;  5CHE C;  4XHY A;  1XHN A;  3KYG A;  3VY2 A;  2FUR A;  3DMB A;  3HY8 A;  5ESC A;  1FLM A;  1W3Q A;  1G78 A;  1RFE A;  4YBN A;  3B5M A;  2QCK A;  1I0R A;  4HMV A;  1W9A A;  4IRA A;  3U34 A;  3PFT A;  3F7E A;  2D38 A;  3K87 A;  4ZKY A;  2Q9K A;  1RZ0 A;  4L82 A;  2R6V A;  4QVB A;  1NRG A;  2D37 A;  2I51 A;  4HMT A;  1DNL A;  3IN6 A;  3TGV A;  3K88 A;  4N7R C;  3BA3 A;  1G76 A;  2IAB A; 
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