4QHF | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	109
structure length	109
Chain Sequence	MKDRKILNEILSNTINELNLNDKKANIKIKIKPLKRKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILINLINKLHQK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Methanocaldococcus jannaschii
publication title	Multiple stable conformations account for reversible concentration-dependent oligomerization and autoinhibition of a metamorphic metallopeptidase pubmed doi rcsb
molecule keywords	Uncharacterized protein MJ1213
total genus	38
structure length	109
sequence length	109
ec nomenclature
pdb deposition date	2014-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05569	Peptidase_M56	BlaR1 peptidase M56

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2010.10	Alpha Beta	2-Layer Sandwich	Zincin-like	Metalloproteases ("zincins"), catalytic domain	4qhfA00

4AW6A 3CQBA 2YPTA 4JIXA 4IL3A 4JIUA 4QHFA
chains in the Genus database with same CATH superfamily

3DS9A 3DSEA 1ZKXA 1ZN3A 4EL4A 2ILPA 3V0AB 3BONA 4ZJXA 3C89A 3QW5A 4JIXA 3FIEA 4JIUA 2G7PA 3C8BA 1F31A 1F82A 3D3XA 2W2DA 3BOKA 4QHFA 3C88A 5BQNA 4ELCA 3CQBA 4AW6A 3BWIA 2A97A 2ISEA 3DDBA 1Z7HA 3V0AA 3QIZA 2NYYA 3DDAA 2ISGA 3QIXA 3QW7A 1ZL5A 2A8AA 2IMCA 2YPTA 1EPWA 3QW6A 2XHLA 2ETFA 4KTXA 3C8AA 1G9AA 2IMBA 1G9CA 4KUFA 1S0CA 3E11A 4KS6A 3BTAA 4J1LA 3ZUQA 1I1EA 1S0EA 4HEVA 1G9DA 1S0FA 3V0BA 1S0BA 3V0BB 3VUOA 5BQMA 2G7QA 4EJ5A 2IMAA 1S0DA 4ZKTB 3QJ0A 1XTGA 4IL3A 1G9BA 2G7NA 1ZKWA 3QIYA 3BOOA 1YVGA 1ZB7A 3ZURA 2FPQA 1T3AA 3QW8A 2NP0A 2EJQA 1E1HA 3NF3A 3FFZA 3FIIA 1T3CA 1ZL6A 3DEBA 2G7KA 3ZUSA 2ISHA 1S0GA 1XTFA 3K3QB 2NZ9A 2QN0A
chains in the Genus database with same CATH topology

4AW6A 1OZ9A 3CQBA 2YPTA 1XAXA 4JIXA 1XM5A 4IL3A 4JIUA 1TVIA 4QHFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4AW6 A;  3CQB A;  2YPT A;  4JIX A;  4IL3 A;  4JIU A;  4QHF A; 
#chains in the Genus database with same CATH topology
 3DS9 A;  3DSE A;  1ZKX A;  1ZN3 A;  4EL4 A;  2ILP A;  3V0A B;  3BON A;  4ZJX A;  3C89 A;  3QW5 A;  4JIX A;  3FIE A;  4JIU A;  2G7P A;  3C8B A;  1F31 A;  1F82 A;  3D3X A;  2W2D A;  3BOK A;  4QHF A;  3C88 A;  5BQN A;  4ELC A;  3CQB A;  4AW6 A;  3BWI A;  2A97 A;  2ISE A;  3DDB A;  1Z7H A;  3V0A A;  3QIZ A;  2NYY A;  3DDA A;  2ISG A;  3QIX A;  3QW7 A;  1ZL5 A;  2A8A A;  2IMC A;  2YPT A;  1EPW A;  3QW6 A;  2XHL A;  2ETF A;  4KTX A;  3C8A A;  1G9A A;  2IMB A;  1G9C A;  4KUF A;  1S0C A;  3E11 A;  4KS6 A;  3BTA A;  4J1L A;  3ZUQ A;  1I1E A;  1S0E A;  4HEV A;  1G9D A;  1S0F A;  3V0B A;  1S0B A;  3V0B B;  3VUO A;  5BQM A;  2G7Q A;  4EJ5 A;  2IMA A;  1S0D A;  4ZKT B;  3QJ0 A;  1XTG A;  4IL3 A;  1G9B A;  2G7N A;  1ZKW A;  3QIY A;  3BOO A;  1YVG A;  1ZB7 A;  3ZUR A;  2FPQ A;  1T3A A;  3QW8 A;  2NP0 A;  2EJQ A;  1E1H A;  3NF3 A;  3FFZ A;  3FII A;  1T3C A;  1ZL6 A;  3DEB A;  2G7K A;  3ZUS A;  2ISH A;  1S0G A;  1XTF A;  3K3Q B;  2NZ9 A;  2QN0 A; 
#chains in the Genus database with same CATH homology
 4AW6 A;  1OZ9 A;  3CQB A;  2YPT A;  1XAX A;  4JIX A;  1XM5 A;  4IL3 A;  4JIU A;  1TVI A;  4QHF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4QHFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations