4TV4 | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	160
structure length	145
Chain Sequence	AQDIFLKIDGINGESLDDSHKDEIEVLNWNWEIQQKASVKDLTFEHAIDRASPNLMKYALTGKHVDQAVLVMRKAGGNPLEYLKLTMSDVIITRVRPSGSRDDRSRETVSLSFAKVKQEYVVQNAQGGSGGAVTTSFDIKGNKET

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of a Putative uncharacterized protein from Burkholderia pseudomallei rcsb
molecule keywords	Uncharacterized protein
molecule tags	Unknown function
source organism	Burkholderia pseudomallei
total genus	29
structure length	145
sequence length	160
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2014-06-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05638	T6SS_HCP	Type VI secretion system effector, Hcp

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.20	Mainly Beta	Roll	Pnp Oxidase; Chain A	Hcp1-like	4tv4A00

1Y12A 3EAAA 3V4HA 4HKHA 3HE1A 4TV4A 4W64A
chains in the Genus database with same CATH superfamily

1W3OA 3ZOGA 2ASFA 1WLKA 3DMBA 2OU5A 1WGBA 1WV4A 1W3RA 2I51A 2QCKA 3HE1A 4R82A 3ZOCA 4HMWA 4HMXA 3PFTA 3ZODA 1USCA 3K88A 4HMUA 4MTKA 1G76A 4W64A 4YWNA 2K4QA 1USFA 2I02A 4F07A 3BNKA 4ZKYA 2NR4A 2D5MA 3U0IA 1XHNA 4HMVA 2ECUA 3VY5A 5CHEC 2GJGA 2AQ6A 3SWJA 3EC6A 1I0SA 3A20A 4N7RC 3ZOHA 5JABA 2HTDA 3R5YA 2FG9A 3HMZA 2A2JA 4IRAA 3R5LA 3KYGA 3K87A 2D36A 3A6QA 3HY8A 4HKHA 4TV4A 1CI0A 2VPAA 3A6RA 2HQ9A 2ED4A 1DNLA 2FHQA 1FLMA 1WLIA 2E83A 3H96A 1W3QA 2X1KA 1RZ0A 2QEAA 2RE7A 3RH7A 2OL5A 1G78A 4HMSA 2ARZA 1TY9A 2P5ZX 1RFEA 3AWHA 3DB0A 1JNWA 4HX6A 3VY2A 3KYFA 1G77A 2D37A 2HQ7A 3BA3A 5CHOA 2GUJA 4XJ2A 3CB0A 3U35A 1G79A 2FURA 3BPKA 3R5ZA 2X1JA 3K86A 4HMTA 2IG6A 1W9AA 2ECRA 2HHZA 4Y9IA 3F7EA 3AMFA 3VYAA 2HTIA 2Q9KA 3DNHA 1YLNA 1YOAA 3E4VA 3IN6A 3NFWA 3R5PA 3ZOFA 2PTFA 4Z85A 2R6VA 2IMLA 4QVBA 5ESCA 2D38A 3U34A 3EAAA 2IABA 1RZ1A 1XXOA 3B5MA 4UHVA 3FKHA 4XHYA 3TGVA 2L1TA 1I0RA 1Y12A 2R0XA 3FGEA 3R5RA 3U5WA 1AXJA 3V4HA 3CP3A 3GASA 1W3PA 1T9MA 1Y30A 3R5WA 4YBNA 1VL7A 1NRGA 3ZOEA 4L82A 2RDEA 5BNCA 1EJEA
chains in the Genus database with same CATH topology

1Y12A 3EAAA 3V4HA 4HKHA 3HE1A 4TV4A 4W64A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1Y12 A;  3EAA A;  3V4H A;  4HKH A;  3HE1 A;  4TV4 A;  4W64 A; 
#chains in the Genus database with same CATH topology
 1W3O A;  3ZOG A;  2ASF A;  1WLK A;  3DMB A;  2OU5 A;  1WGB A;  1WV4 A;  1W3R A;  2I51 A;  2QCK A;  3HE1 A;  4R82 A;  3ZOC A;  4HMW A;  4HMX A;  3PFT A;  3ZOD A;  1USC A;  3K88 A;  4HMU A;  4MTK A;  1G76 A;  4W64 A;  4YWN A;  2K4Q A;  1USF A;  2I02 A;  4F07 A;  3BNK A;  4ZKY A;  2NR4 A;  2D5M A;  3U0I A;  1XHN A;  4HMV A;  2ECU A;  3VY5 A;  5CHE C;  2GJG A;  2AQ6 A;  3SWJ A;  3EC6 A;  1I0S A;  3A20 A;  4N7R C;  3ZOH A;  5JAB A;  2HTD A;  3R5Y A;  2FG9 A;  3HMZ A;  2A2J A;  4IRA A;  3R5L A;  3KYG A;  3K87 A;  2D36 A;  3A6Q A;  3HY8 A;  4HKH A;  4TV4 A;  1CI0 A;  2VPA A;  3A6R A;  2HQ9 A;  2ED4 A;  1DNL A;  2FHQ A;  1FLM A;  1WLI A;  2E83 A;  3H96 A;  1W3Q A;  2X1K A;  1RZ0 A;  2QEA A;  2RE7 A;  3RH7 A;  2OL5 A;  1G78 A;  4HMS A;  2ARZ A;  1TY9 A;  2P5Z X;  1RFE A;  3AWH A;  3DB0 A;  1JNW A;  4HX6 A;  3VY2 A;  3KYF A;  1G77 A;  2D37 A;  2HQ7 A;  3BA3 A;  5CHO A;  2GUJ A;  4XJ2 A;  3CB0 A;  3U35 A;  1G79 A;  2FUR A;  3BPK A;  3R5Z A;  2X1J A;  3K86 A;  4HMT A;  2IG6 A;  1W9A A;  2ECR A;  2HHZ A;  4Y9I A;  3F7E A;  3AMF A;  3VYA A;  2HTI A;  2Q9K A;  3DNH A;  1YLN A;  1YOA A;  3E4V A;  3IN6 A;  3NFW A;  3R5P A;  3ZOF A;  2PTF A;  4Z85 A;  2R6V A;  2IML A;  4QVB A;  5ESC A;  2D38 A;  3U34 A;  3EAA A;  2IAB A;  1RZ1 A;  1XXO A;  3B5M A;  4UHV A;  3FKH A;  4XHY A;  3TGV A;  2L1T A;  1I0R A;  1Y12 A;  2R0X A;  3FGE A;  3R5R A;  3U5W A;  1AXJ A;  3V4H A;  3CP3 A;  3GAS A;  1W3P A;  1T9M A;  1Y30 A;  3R5W A;  4YBN A;  1VL7 A;  1NRG A;  3ZOE A;  4L82 A;  2RDE A;  5BNC A;  1EJE A; 
#chains in the Genus database with same CATH homology
 1Y12 A;  3EAA A;  3V4H A;  4HKH A;  3HE1 A;  4TV4 A;  4W64 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4TV4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations