4XJ2A

Fera - nadh:fmn oxidoreductase from paracoccus denitrificans in complex with fmn
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
165
structure length
162
Chain Sequence
DEITFHPAARLLREALGRFATGVTVVTTAGPQGPLGMTVNSFSSVSLEPPLVLWCPARTSARHAAFAEAGAWSVHVLGSEQLETCLRFTRGGRQFEGLDTVLTPEGVPVIPGVAARFDCAAHAAHEAGDHSVLIGRVLRVTVAGPGDHPLVFAAGRFGQFEP
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (40-46)AH1 (25-33)TIV3 (105-108)TVIII1 (33-36)TI3 (94-97)TVIII3 (85-88)S5 (87-92)S8 (131-143)TIV1 (55-58)S3 (59-62)TVIII2 (62-65)TIV2 (63-66)S4 (67-70)TI4 (119-122)TI2 (73-76)TII'1 (109-112)AH2 (78-84)S9 (146-158)AH3 (97-104)TII1 (111-114)S6 (117-118)S7 (124-125)TII2 (126-129)TVIII4 (129-132)S2 (49-55)Updating...
connected with : NaN
publication title Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans.
pubmed doi rcsb
molecule keywords Flavin reductase domain protein, FMN-binding protein
molecule tags Oxidoreductase
source organism Paracoccus denitrificans pd1222
total genus 30
structure length 162
sequence length 165
ec nomenclature
pdb deposition date 2015-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4xj2A00
1CI0A 4HMUA 1XHNA 3BPKA 3VYAA 2ASFA 1YOAA 4IRAA 3R5LA 1YLNA 2ED4A 5CHEC 4ZKYA 3K86A 4F07A 4XJ2A 1W3QA 3R5ZA 3CP3A 4Z85A 5ESCA 3ZOFA 2D38A 2R6VA 3R5PA 4L82A 4R82A 3VY2A 2HQ9A 2R0XA 4HMXA 1W9AA 2QEAA 1G76A 3HMZA 4HMSA 2AQ6A 2FHQA 1G77A 1DNLA 2ARZA 2FURA 2D36A 1VL7A 3HY8A 2QCKA 1T9MA 5BNCA 5CHOA 3PFTA 3ZOCA 1RZ1A 2HTIA 3EC6A 3ZODA 2HQ7A 2X1JA 3KYFA 3ZOGA 2ECRA 3E4VA 3R5WA 3FGEA 3U34A 3IN6A 4Y9IA 2A2JA 2PTFA 1G79A 1W3PA 2E83A 3U5WA 5JABA 2GJGA 3AWHA 3SWJA 3A20A 1TY9A 2VPAA 2I02A 1W3RA 3ZOHA 3R5YA 1XXOA 3ZOEA 2D37A 4N7RC 3A6RA 3F7EA 3BNKA 2NR4A 1G78A 1WV4A 1Y30A 2HTDA 1WLKA 4QVBA 4YBNA 2RDEA 3CB0A 2FG9A 2D5MA 4HMWA 3BA3A 4XHYA 3AMFA 2ECUA 2RE7A 3DMBA 3DNHA 3DB0A 2IG6A 3A6QA 2HHZA 4HX6A 3GASA 3B5MA 3VY5A 1FLMA 2I51A 1I0RA 2IABA 3K87A 1USFA 1RZ0A 1NRGA 3KYGA 2X1KA 1EJEA 3R5RA 3K88A 1USCA 2OU5A 3FKHA 3RH7A 3U35A 1AXJA 4HMVA 2IMLA 3U0IA 1RFEA 1I0SA 1WLIA 2OL5A 1W3OA 3TGVA 3NFWA 2Q9KA 4HMTA 1JNWA 3H96A 1WGBA 4YWNA
chains in the Genus database with same CATH superfamily
1CI0A 4HMUA 1XHNA 3BPKA 3VYAA 2ASFA 1YOAA 4IRAA 2P5ZX 3R5LA 1YLNA 2ED4A 5CHEC 4ZKYA 3K86A 4F07A 4XJ2A 1W3QA 3R5ZA 3CP3A 4Z85A 5ESCA 3ZOFA 2D38A 2R6VA 4MTKA 3R5PA 4L82A 4R82A 3VY2A 2HQ9A 2R0XA 4HMXA 1W9AA 2QEAA 1G76A 1Y12A 3HMZA 4HMSA 2AQ6A 2FHQA 4TV4A 1G77A 1DNLA 2ARZA 2FURA 2D36A 1VL7A 3HY8A 2QCKA 1T9MA 5BNCA 5CHOA 3PFTA 3ZOCA 1RZ1A 2HTIA 3EC6A 3ZODA 2HQ7A 3V4HA 2X1JA 3HE1A 3KYFA 3ZOGA 2ECRA 3E4VA 3R5WA 3FGEA 3U34A 3IN6A 4Y9IA 2A2JA 2PTFA 1G79A 4HKHA 1W3PA 2E83A 3U5WA 2GUJA 5JABA 2GJGA 3AWHA 3SWJA 3A20A 1TY9A 2VPAA 2I02A 1W3RA 3ZOHA 3R5YA 1XXOA 3ZOEA 2D37A 4N7RC 3A6RA 3F7EA 3BNKA 2NR4A 1G78A 1WV4A 1Y30A 2HTDA 1WLKA 4QVBA 4YBNA 2RDEA 3CB0A 2FG9A 2D5MA 4HMWA 3BA3A 4XHYA 3AMFA 2ECUA 2RE7A 3DMBA 3DNHA 3DB0A 2IG6A 3EAAA 3A6QA 2HHZA 4HX6A 3GASA 3B5MA 3VY5A 1FLMA 2I51A 1I0RA 2IABA 3K87A 1USFA 2L1TA 1RZ0A 1NRGA 3KYGA 2X1KA 1EJEA 3R5RA 3K88A 2K4QA 1USCA 4W64A 2OU5A 3FKHA 4UHVA 3RH7A 3U35A 1AXJA 4HMVA 2IMLA 3U0IA 1RFEA 1I0SA 1WLIA 2OL5A 1W3OA 3TGVA 3NFWA 2Q9KA 4HMTA 1JNWA 3H96A 1WGBA 4YWNA
chains in the Genus database with same CATH topology
1CI0A 4HMUA 1XHNA 3BPKA 3VYAA 2ASFA 1YOAA 4IRAA 3R5LA 1YLNA 2ED4A 5CHEC 4ZKYA 3K86A 4F07A 4XJ2A 1W3QA 3R5ZA 3CP3A 4Z85A 5ESCA 3ZOFA 2D38A 2R6VA 3R5PA 4L82A 4R82A 3VY2A 2HQ9A 2R0XA 4HMXA 1W9AA 2QEAA 1G76A 3HMZA 4HMSA 2AQ6A 2FHQA 1G77A 1DNLA 2ARZA 2FURA 2D36A 1VL7A 3HY8A 2QCKA 1T9MA 5BNCA 5CHOA 3PFTA 3ZOCA 1RZ1A 2HTIA 3EC6A 3ZODA 2HQ7A 2X1JA 3KYFA 3ZOGA 2ECRA 3E4VA 3R5WA 3FGEA 3U34A 3IN6A 4Y9IA 2A2JA 2PTFA 1G79A 1W3PA 2E83A 3U5WA 5JABA 2GJGA 3AWHA 3SWJA 3A20A 1TY9A 2VPAA 2I02A 1W3RA 3ZOHA 3R5YA 1XXOA 3ZOEA 2D37A 4N7RC 3A6RA 3F7EA 3BNKA 2NR4A 1G78A 1WV4A 1Y30A 2HTDA 1WLKA 4QVBA 4YBNA 2RDEA 3CB0A 2FG9A 2D5MA 4HMWA 3BA3A 4XHYA 3AMFA 2ECUA 2RE7A 3DMBA 3DNHA 3DB0A 2IG6A 3A6QA 2HHZA 4HX6A 3GASA 3B5MA 3VY5A 1FLMA 2I51A 1I0RA 2IABA 3K87A 1USFA 1RZ0A 1NRGA 3KYGA 2X1KA 1EJEA 3R5RA 3K88A 1USCA 2OU5A 3FKHA 3RH7A 3U35A 1AXJA 4HMVA 2IMLA 3U0IA 1RFEA 1I0SA 1WLIA 2OL5A 1W3OA 3TGVA 3NFWA 2Q9KA 4HMTA 1JNWA 3H96A 1WGBA 4YWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CI0 A;  4HMU A;  1XHN A;  3BPK A;  3VYA A;  2ASF A;  1YOA A;  4IRA A;  3R5L A;  1YLN A;  2ED4 A;  5CHE C;  4ZKY A;  3K86 A;  4F07 A;  4XJ2 A;  1W3Q A;  3R5Z A;  3CP3 A;  4Z85 A;  5ESC A;  3ZOF A;  2D38 A;  2R6V A;  3R5P A;  4L82 A;  4R82 A;  3VY2 A;  2HQ9 A;  2R0X A;  4HMX A;  1W9A A;  2QEA A;  1G76 A;  3HMZ A;  4HMS A;  2AQ6 A;  2FHQ A;  1G77 A;  1DNL A;  2ARZ A;  2FUR A;  2D36 A;  1VL7 A;  3HY8 A;  2QCK A;  1T9M A;  5BNC A;  5CHO A;  3PFT A;  3ZOC A;  1RZ1 A;  2HTI A;  3EC6 A;  3ZOD A;  2HQ7 A;  2X1J A;  3KYF A;  3ZOG A;  2ECR A;  3E4V A;  3R5W A;  3FGE A;  3U34 A;  3IN6 A;  4Y9I A;  2A2J A;  2PTF A;  1G79 A;  1W3P A;  2E83 A;  3U5W A;  5JAB A;  2GJG A;  3AWH A;  3SWJ A;  3A20 A;  1TY9 A;  2VPA A;  2I02 A;  1W3R A;  3ZOH A;  3R5Y A;  1XXO A;  3ZOE A;  2D37 A;  4N7R C;  3A6R A;  3F7E A;  3BNK A;  2NR4 A;  1G78 A;  1WV4 A;  1Y30 A;  2HTD A;  1WLK A;  4QVB A;  4YBN A;  2RDE A;  3CB0 A;  2FG9 A;  2D5M A;  4HMW A;  3BA3 A;  4XHY A;  3AMF A;  2ECU A;  2RE7 A;  3DMB A;  3DNH A;  3DB0 A;  2IG6 A;  3A6Q A;  2HHZ A;  4HX6 A;  3GAS A;  3B5M A;  3VY5 A;  1FLM A;  2I51 A;  1I0R A;  2IAB A;  3K87 A;  1USF A;  1RZ0 A;  1NRG A;  3KYG A;  2X1K A;  1EJE A;  3R5R A;  3K88 A;  1USC A;  2OU5 A;  3FKH A;  3RH7 A;  3U35 A;  1AXJ A;  4HMV A;  2IML A;  3U0I A;  1RFE A;  1I0S A;  1WLI A;  2OL5 A;  1W3O A;  3TGV A;  3NFW A;  2Q9K A;  4HMT A;  1JNW A;  3H96 A;  1WGB A;  4YWN A; 
#chains in the Genus database with same CATH topology
 1CI0 A;  4HMU A;  1XHN A;  3BPK A;  3VYA A;  2ASF A;  1YOA A;  4IRA A;  2P5Z X;  3R5L A;  1YLN A;  2ED4 A;  5CHE C;  4ZKY A;  3K86 A;  4F07 A;  4XJ2 A;  1W3Q A;  3R5Z A;  3CP3 A;  4Z85 A;  5ESC A;  3ZOF A;  2D38 A;  2R6V A;  4MTK A;  3R5P A;  4L82 A;  4R82 A;  3VY2 A;  2HQ9 A;  2R0X A;  4HMX A;  1W9A A;  2QEA A;  1G76 A;  1Y12 A;  3HMZ A;  4HMS A;  2AQ6 A;  2FHQ A;  4TV4 A;  1G77 A;  1DNL A;  2ARZ A;  2FUR A;  2D36 A;  1VL7 A;  3HY8 A;  2QCK A;  1T9M A;  5BNC A;  5CHO A;  3PFT A;  3ZOC A;  1RZ1 A;  2HTI A;  3EC6 A;  3ZOD A;  2HQ7 A;  3V4H A;  2X1J A;  3HE1 A;  3KYF A;  3ZOG A;  2ECR A;  3E4V A;  3R5W A;  3FGE A;  3U34 A;  3IN6 A;  4Y9I A;  2A2J A;  2PTF A;  1G79 A;  4HKH A;  1W3P A;  2E83 A;  3U5W A;  2GUJ A;  5JAB A;  2GJG A;  3AWH A;  3SWJ A;  3A20 A;  1TY9 A;  2VPA A;  2I02 A;  1W3R A;  3ZOH A;  3R5Y A;  1XXO A;  3ZOE A;  2D37 A;  4N7R C;  3A6R A;  3F7E A;  3BNK A;  2NR4 A;  1G78 A;  1WV4 A;  1Y30 A;  2HTD A;  1WLK A;  4QVB A;  4YBN A;  2RDE A;  3CB0 A;  2FG9 A;  2D5M A;  4HMW A;  3BA3 A;  4XHY A;  3AMF A;  2ECU A;  2RE7 A;  3DMB A;  3DNH A;  3DB0 A;  2IG6 A;  3EAA A;  3A6Q A;  2HHZ A;  4HX6 A;  3GAS A;  3B5M A;  3VY5 A;  1FLM A;  2I51 A;  1I0R A;  2IAB A;  3K87 A;  1USF A;  2L1T A;  1RZ0 A;  1NRG A;  3KYG A;  2X1K A;  1EJE A;  3R5R A;  3K88 A;  2K4Q A;  1USC A;  4W64 A;  2OU5 A;  3FKH A;  4UHV A;  3RH7 A;  3U35 A;  1AXJ A;  4HMV A;  2IML A;  3U0I A;  1RFE A;  1I0S A;  1WLI A;  2OL5 A;  1W3O A;  3TGV A;  3NFW A;  2Q9K A;  4HMT A;  1JNW A;  3H96 A;  1WGB A;  4YWN A; 
#chains in the Genus database with same CATH homology
 1CI0 A;  4HMU A;  1XHN A;  3BPK A;  3VYA A;  2ASF A;  1YOA A;  4IRA A;  3R5L A;  1YLN A;  2ED4 A;  5CHE C;  4ZKY A;  3K86 A;  4F07 A;  4XJ2 A;  1W3Q A;  3R5Z A;  3CP3 A;  4Z85 A;  5ESC A;  3ZOF A;  2D38 A;  2R6V A;  3R5P A;  4L82 A;  4R82 A;  3VY2 A;  2HQ9 A;  2R0X A;  4HMX A;  1W9A A;  2QEA A;  1G76 A;  3HMZ A;  4HMS A;  2AQ6 A;  2FHQ A;  1G77 A;  1DNL A;  2ARZ A;  2FUR A;  2D36 A;  1VL7 A;  3HY8 A;  2QCK A;  1T9M A;  5BNC A;  5CHO A;  3PFT A;  3ZOC A;  1RZ1 A;  2HTI A;  3EC6 A;  3ZOD A;  2HQ7 A;  2X1J A;  3KYF A;  3ZOG A;  2ECR A;  3E4V A;  3R5W A;  3FGE A;  3U34 A;  3IN6 A;  4Y9I A;  2A2J A;  2PTF A;  1G79 A;  1W3P A;  2E83 A;  3U5W A;  5JAB A;  2GJG A;  3AWH A;  3SWJ A;  3A20 A;  1TY9 A;  2VPA A;  2I02 A;  1W3R A;  3ZOH A;  3R5Y A;  1XXO A;  3ZOE A;  2D37 A;  4N7R C;  3A6R A;  3F7E A;  3BNK A;  2NR4 A;  1G78 A;  1WV4 A;  1Y30 A;  2HTD A;  1WLK A;  4QVB A;  4YBN A;  2RDE A;  3CB0 A;  2FG9 A;  2D5M A;  4HMW A;  3BA3 A;  4XHY A;  3AMF A;  2ECU A;  2RE7 A;  3DMB A;  3DNH A;  3DB0 A;  2IG6 A;  3A6Q A;  2HHZ A;  4HX6 A;  3GAS A;  3B5M A;  3VY5 A;  1FLM A;  2I51 A;  1I0R A;  2IAB A;  3K87 A;  1USF A;  1RZ0 A;  1NRG A;  3KYG A;  2X1K A;  1EJE A;  3R5R A;  3K88 A;  1USC A;  2OU5 A;  3FKH A;  3RH7 A;  3U35 A;  1AXJ A;  4HMV A;  2IML A;  3U0I A;  1RFE A;  1I0S A;  1WLI A;  2OL5 A;  1W3O A;  3TGV A;  3NFW A;  2Q9K A;  4HMT A;  1JNW A;  3H96 A;  1WGB A;  4YWN A; 
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