4YBNA

Structure of the fad and heme binding protein msmeg_4975 from mycobacterium smegmatis
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
214
structure length
214
Chain Sequence
STRVTRLDEKQSTSRERLDDLLDTIPLATVALVRDGHPVAFPIGFGRVGDELVIHGSTGSPWLRALAEGAPAAVSVTALDGVVVARSSFESSFRYRSATLFGTFEVIADDAKRGYLDALTDRFIPGRTAELRASTRKELAATLALALAIGDDNWSLKLSEGWPDDADEDIAAGGWAGVVPLTTQYGAPLTAPDVAAGTPLPPSVRGMTGELRNT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (13-16)S8 (150-156)S1 (19-20)S3 (45-56)3H1 (16-18)AH1 (23-31)TIV2 (41-44)S2 (35-42)AH6 (210-214)AH3 (119-131)TIV3 (55-58)AH2 (69-76)S4 (59-65)TI1 (65-68)TVIII1 (93-96)S5 (79-92)S9 (162-167)TI3 (96-99)S6 (100-111)TI4 (116-119)S7 (113-114)TII1 (132-135)TII2 (203-206)AH4 (144-149)S10 (185-188)TI5 (158-161)TI2 (95-98)AH5 (175-180)3H2 (136-138)TI6 (199-202)Updating...
connected with : NaN
publication title Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
molecule keywords Flavin-nucleotide-binding protein
total genus 51
structure length 214
sequence length 214
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4ybnA00
2FURA 1USCA 2HQ7A 3H96A 4R82A 2ECRA 4ZKYA 2PTFA 3DB0A 4N7RC 2VPAA 3CB0A 1USFA 3NFWA 1I0SA 1XHNA 1G78A 3K86A 1RZ1A 3GASA 3R5RA 1W3RA 3ZOEA 3E4VA 3DMBA 3A20A 2ED4A 3R5PA 3R5ZA 3U35A 3K88A 3BPKA 1WLIA 1RZ0A 4HMWA 2I51A 1W3OA 3EC6A 1G76A 3VY5A 3CP3A 2AQ6A 2QEAA 2FG9A 5ESCA 4L82A 1Y30A 2IG6A 5CHOA 4YWNA 4IRAA 3KYGA 4HMTA 2HTIA 1CI0A 4QVBA 4HMXA 3ZOFA 2A2JA 4Y9IA 2D37A 4XHYA 2FHQA 3AWHA 3U0IA 1FLMA 1WLKA 2QCKA 4HMUA 4HMSA 2ASFA 2HQ9A 3HY8A 1W3PA 2E83A 2D5MA 1YLNA 1NRGA 3ZOHA 3ZOGA 2X1JA 1G79A 3BNKA 1WV4A 2ECUA 2OL5A 4Z85A 1VL7A 3AMFA 3A6QA 2OU5A 5JABA 3R5WA 3BA3A 2GJGA 1I0RA 1EJEA 3K87A 2ARZA 2R0XA 3TGVA 1DNLA 2HTDA 1RFEA 2D36A 3ZOCA 2I02A 1XXOA 2RE7A 3PFTA 3KYFA 3U5WA 2X1KA 3ZODA 5CHEC 2RDEA 1AXJA 3SWJA 2R6VA 1W9AA 3U34A 3FKHA 3DNHA 1YOAA 1TY9A 4HMVA 3VYAA 3F7EA 3R5YA 3FGEA 2Q9KA 4YBNA 5BNCA 2D38A 3VY2A 1T9MA 1W3QA 1WGBA 3HMZA 1G77A 3A6RA 2NR4A 3IN6A 2HHZA 4XJ2A 1JNWA 2IABA 3B5MA 2IMLA 4HX6A 3R5LA 4F07A 3RH7A
chains in the Genus database with same CATH superfamily
2FURA 1USCA 2HQ7A 3H96A 4R82A 2ECRA 4ZKYA 2PTFA 3DB0A 4N7RC 2VPAA 3CB0A 1USFA 3NFWA 1I0SA 1XHNA 1G78A 3K86A 1RZ1A 3GASA 3R5RA 1W3RA 3ZOEA 4UHVA 2P5ZX 3E4VA 3DMBA 3A20A 2ED4A 3R5PA 3R5ZA 3U35A 4TV4A 3K88A 3BPKA 1WLIA 1RZ0A 4HMWA 2I51A 1W3OA 3EC6A 1G76A 3VY5A 4HKHA 3CP3A 2AQ6A 3V4HA 2QEAA 2FG9A 5ESCA 4L82A 1Y30A 2IG6A 5CHOA 4YWNA 4IRAA 3KYGA 4HMTA 2HTIA 1CI0A 4QVBA 4HMXA 3ZOFA 2A2JA 4Y9IA 2D37A 4XHYA 2FHQA 4MTKA 3AWHA 3U0IA 1FLMA 1WLKA 2QCKA 4HMUA 4HMSA 2ASFA 4W64A 2HQ9A 3HY8A 1W3PA 2E83A 2D5MA 1YLNA 1NRGA 3ZOHA 3ZOGA 2X1JA 1G79A 3BNKA 1WV4A 2ECUA 2OL5A 4Z85A 1VL7A 3AMFA 3A6QA 2OU5A 5JABA 3R5WA 3BA3A 2GJGA 1I0RA 1EJEA 1Y12A 3K87A 2ARZA 2R0XA 3TGVA 1DNLA 2HTDA 2L1TA 1RFEA 2D36A 3ZOCA 2I02A 2GUJA 1XXOA 2RE7A 3PFTA 3KYFA 3U5WA 2X1KA 3ZODA 5CHEC 2RDEA 1AXJA 3SWJA 2R6VA 1W9AA 3U34A 3FKHA 3DNHA 1YOAA 3HE1A 1TY9A 4HMVA 3EAAA 3VYAA 3F7EA 3R5YA 3FGEA 2Q9KA 4YBNA 5BNCA 2D38A 3VY2A 1T9MA 1W3QA 1WGBA 3HMZA 1G77A 2K4QA 3A6RA 2NR4A 3IN6A 2HHZA 4XJ2A 1JNWA 2IABA 3B5MA 2IMLA 4HX6A 3R5LA 4F07A 3RH7A
chains in the Genus database with same CATH topology
2FURA 1USCA 2HQ7A 3H96A 4R82A 2ECRA 4ZKYA 2PTFA 3DB0A 4N7RC 2VPAA 3CB0A 1USFA 3NFWA 1I0SA 1XHNA 1G78A 3K86A 1RZ1A 3GASA 3R5RA 1W3RA 3ZOEA 3E4VA 3DMBA 3A20A 2ED4A 3R5PA 3R5ZA 3U35A 3K88A 3BPKA 1WLIA 1RZ0A 4HMWA 2I51A 1W3OA 3EC6A 1G76A 3VY5A 3CP3A 2AQ6A 2QEAA 2FG9A 5ESCA 4L82A 1Y30A 2IG6A 5CHOA 4YWNA 4IRAA 3KYGA 4HMTA 2HTIA 1CI0A 4QVBA 4HMXA 3ZOFA 2A2JA 4Y9IA 2D37A 4XHYA 2FHQA 3AWHA 3U0IA 1FLMA 1WLKA 2QCKA 4HMUA 4HMSA 2ASFA 2HQ9A 3HY8A 1W3PA 2E83A 2D5MA 1YLNA 1NRGA 3ZOHA 3ZOGA 2X1JA 1G79A 3BNKA 1WV4A 2ECUA 2OL5A 4Z85A 1VL7A 3AMFA 3A6QA 2OU5A 5JABA 3R5WA 3BA3A 2GJGA 1I0RA 1EJEA 3K87A 2ARZA 2R0XA 3TGVA 1DNLA 2HTDA 1RFEA 2D36A 3ZOCA 2I02A 1XXOA 2RE7A 3PFTA 3KYFA 3U5WA 2X1KA 3ZODA 5CHEC 2RDEA 1AXJA 3SWJA 2R6VA 1W9AA 3U34A 3FKHA 3DNHA 1YOAA 1TY9A 4HMVA 3VYAA 3F7EA 3R5YA 3FGEA 2Q9KA 4YBNA 5BNCA 2D38A 3VY2A 1T9MA 1W3QA 1WGBA 3HMZA 1G77A 3A6RA 2NR4A 3IN6A 2HHZA 4XJ2A 1JNWA 2IABA 3B5MA 2IMLA 4HX6A 3R5LA 4F07A 3RH7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUR A;  1USC A;  2HQ7 A;  3H96 A;  4R82 A;  2ECR A;  4ZKY A;  2PTF A;  3DB0 A;  4N7R C;  2VPA A;  3CB0 A;  1USF A;  3NFW A;  1I0S A;  1XHN A;  1G78 A;  3K86 A;  1RZ1 A;  3GAS A;  3R5R A;  1W3R A;  3ZOE A;  3E4V A;  3DMB A;  3A20 A;  2ED4 A;  3R5P A;  3R5Z A;  3U35 A;  3K88 A;  3BPK A;  1WLI A;  1RZ0 A;  4HMW A;  2I51 A;  1W3O A;  3EC6 A;  1G76 A;  3VY5 A;  3CP3 A;  2AQ6 A;  2QEA A;  2FG9 A;  5ESC A;  4L82 A;  1Y30 A;  2IG6 A;  5CHO A;  4YWN A;  4IRA A;  3KYG A;  4HMT A;  2HTI A;  1CI0 A;  4QVB A;  4HMX A;  3ZOF A;  2A2J A;  4Y9I A;  2D37 A;  4XHY A;  2FHQ A;  3AWH A;  3U0I A;  1FLM A;  1WLK A;  2QCK A;  4HMU A;  4HMS A;  2ASF A;  2HQ9 A;  3HY8 A;  1W3P A;  2E83 A;  2D5M A;  1YLN A;  1NRG A;  3ZOH A;  3ZOG A;  2X1J A;  1G79 A;  3BNK A;  1WV4 A;  2ECU A;  2OL5 A;  4Z85 A;  1VL7 A;  3AMF A;  3A6Q A;  2OU5 A;  5JAB A;  3R5W A;  3BA3 A;  2GJG A;  1I0R A;  1EJE A;  3K87 A;  2ARZ A;  2R0X A;  3TGV A;  1DNL A;  2HTD A;  1RFE A;  2D36 A;  3ZOC A;  2I02 A;  1XXO A;  2RE7 A;  3PFT A;  3KYF A;  3U5W A;  2X1K A;  3ZOD A;  5CHE C;  2RDE A;  1AXJ A;  3SWJ A;  2R6V A;  1W9A A;  3U34 A;  3FKH A;  3DNH A;  1YOA A;  1TY9 A;  4HMV A;  3VYA A;  3F7E A;  3R5Y A;  3FGE A;  2Q9K A;  4YBN A;  5BNC A;  2D38 A;  3VY2 A;  1T9M A;  1W3Q A;  1WGB A;  3HMZ A;  1G77 A;  3A6R A;  2NR4 A;  3IN6 A;  2HHZ A;  4XJ2 A;  1JNW A;  2IAB A;  3B5M A;  2IML A;  4HX6 A;  3R5L A;  4F07 A;  3RH7 A; 
#chains in the Genus database with same CATH topology
 2FUR A;  1USC A;  2HQ7 A;  3H96 A;  4R82 A;  2ECR A;  4ZKY A;  2PTF A;  3DB0 A;  4N7R C;  2VPA A;  3CB0 A;  1USF A;  3NFW A;  1I0S A;  1XHN A;  1G78 A;  3K86 A;  1RZ1 A;  3GAS A;  3R5R A;  1W3R A;  3ZOE A;  4UHV A;  2P5Z X;  3E4V A;  3DMB A;  3A20 A;  2ED4 A;  3R5P A;  3R5Z A;  3U35 A;  4TV4 A;  3K88 A;  3BPK A;  1WLI A;  1RZ0 A;  4HMW A;  2I51 A;  1W3O A;  3EC6 A;  1G76 A;  3VY5 A;  4HKH A;  3CP3 A;  2AQ6 A;  3V4H A;  2QEA A;  2FG9 A;  5ESC A;  4L82 A;  1Y30 A;  2IG6 A;  5CHO A;  4YWN A;  4IRA A;  3KYG A;  4HMT A;  2HTI A;  1CI0 A;  4QVB A;  4HMX A;  3ZOF A;  2A2J A;  4Y9I A;  2D37 A;  4XHY A;  2FHQ A;  4MTK A;  3AWH A;  3U0I A;  1FLM A;  1WLK A;  2QCK A;  4HMU A;  4HMS A;  2ASF A;  4W64 A;  2HQ9 A;  3HY8 A;  1W3P A;  2E83 A;  2D5M A;  1YLN A;  1NRG A;  3ZOH A;  3ZOG A;  2X1J A;  1G79 A;  3BNK A;  1WV4 A;  2ECU A;  2OL5 A;  4Z85 A;  1VL7 A;  3AMF A;  3A6Q A;  2OU5 A;  5JAB A;  3R5W A;  3BA3 A;  2GJG A;  1I0R A;  1EJE A;  1Y12 A;  3K87 A;  2ARZ A;  2R0X A;  3TGV A;  1DNL A;  2HTD A;  2L1T A;  1RFE A;  2D36 A;  3ZOC A;  2I02 A;  2GUJ A;  1XXO A;  2RE7 A;  3PFT A;  3KYF A;  3U5W A;  2X1K A;  3ZOD A;  5CHE C;  2RDE A;  1AXJ A;  3SWJ A;  2R6V A;  1W9A A;  3U34 A;  3FKH A;  3DNH A;  1YOA A;  3HE1 A;  1TY9 A;  4HMV A;  3EAA A;  3VYA A;  3F7E A;  3R5Y A;  3FGE A;  2Q9K A;  4YBN A;  5BNC A;  2D38 A;  3VY2 A;  1T9M A;  1W3Q A;  1WGB A;  3HMZ A;  1G77 A;  2K4Q A;  3A6R A;  2NR4 A;  3IN6 A;  2HHZ A;  4XJ2 A;  1JNW A;  2IAB A;  3B5M A;  2IML A;  4HX6 A;  3R5L A;  4F07 A;  3RH7 A; 
#chains in the Genus database with same CATH homology
 2FUR A;  1USC A;  2HQ7 A;  3H96 A;  4R82 A;  2ECR A;  4ZKY A;  2PTF A;  3DB0 A;  4N7R C;  2VPA A;  3CB0 A;  1USF A;  3NFW A;  1I0S A;  1XHN A;  1G78 A;  3K86 A;  1RZ1 A;  3GAS A;  3R5R A;  1W3R A;  3ZOE A;  3E4V A;  3DMB A;  3A20 A;  2ED4 A;  3R5P A;  3R5Z A;  3U35 A;  3K88 A;  3BPK A;  1WLI A;  1RZ0 A;  4HMW A;  2I51 A;  1W3O A;  3EC6 A;  1G76 A;  3VY5 A;  3CP3 A;  2AQ6 A;  2QEA A;  2FG9 A;  5ESC A;  4L82 A;  1Y30 A;  2IG6 A;  5CHO A;  4YWN A;  4IRA A;  3KYG A;  4HMT A;  2HTI A;  1CI0 A;  4QVB A;  4HMX A;  3ZOF A;  2A2J A;  4Y9I A;  2D37 A;  4XHY A;  2FHQ A;  3AWH A;  3U0I A;  1FLM A;  1WLK A;  2QCK A;  4HMU A;  4HMS A;  2ASF A;  2HQ9 A;  3HY8 A;  1W3P A;  2E83 A;  2D5M A;  1YLN A;  1NRG A;  3ZOH A;  3ZOG A;  2X1J A;  1G79 A;  3BNK A;  1WV4 A;  2ECU A;  2OL5 A;  4Z85 A;  1VL7 A;  3AMF A;  3A6Q A;  2OU5 A;  5JAB A;  3R5W A;  3BA3 A;  2GJG A;  1I0R A;  1EJE A;  3K87 A;  2ARZ A;  2R0X A;  3TGV A;  1DNL A;  2HTD A;  1RFE A;  2D36 A;  3ZOC A;  2I02 A;  1XXO A;  2RE7 A;  3PFT A;  3KYF A;  3U5W A;  2X1K A;  3ZOD A;  5CHE C;  2RDE A;  1AXJ A;  3SWJ A;  2R6V A;  1W9A A;  3U34 A;  3FKH A;  3DNH A;  1YOA A;  1TY9 A;  4HMV A;  3VYA A;  3F7E A;  3R5Y A;  3FGE A;  2Q9K A;  4YBN A;  5BNC A;  2D38 A;  3VY2 A;  1T9M A;  1W3Q A;  1WGB A;  3HMZ A;  1G77 A;  3A6R A;  2NR4 A;  3IN6 A;  2HHZ A;  4XJ2 A;  1JNW A;  2IAB A;  3B5M A;  2IML A;  4HX6 A;  3R5L A;  4F07 A;  3RH7 A; 
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similar chains in the Genus database (?% sequence similarity)
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