4ZKYA

Structure of f420 binding protein, msmeg_6526, from mycobacterium smegmatis
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
139
structure length
139
Chain Sequence
FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-12)S2 (27-32)S4 (47-51)EMPTYTIV2 (41-44)S7 (129-141)TII1 (55-58)AH2 (62-70)TIV3 (56-59)S6 (89-100)S5 (73-80)TI3 (85-88)TI2 (84-87)TVIII1 (82-85)AH3 (104-116)3H1 (118-121)S1 (16-21)TI1 (22-25)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Mycobacterium smegmatis
publication title Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb
molecule keywords Pyridoxamine 5-phosphate oxidase
total genus 33
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2015-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4zkyA00
2HQ7A 4HMWA 2FHQA 2HTDA 1CI0A 3FGEA 2R6VA 2HQ9A 1Y30A 1I0SA 1W9AA 5JABA 3BNKA 4HMVA 4ZKYA 3ZOHA 4HX6A 1RZ0A 3U34A 3HMZA 1G76A 1TY9A 3SWJA 3U0IA 3KYFA 3ZOGA 2I02A 3A20A 2X1KA 1AXJA 1DNLA 2VPAA 3RH7A 4HMSA 2NR4A 3A6QA 2I51A 2A2JA 1USFA 1XHNA 4L82A 2D5MA 2ECUA 3R5ZA 2RE7A 2AQ6A 2QCKA 3A6RA 1W3RA 1G77A 3DNHA 2D37A 3H96A 3NFWA 3U5WA 1RFEA 2OU5A 4XHYA 1JNWA 3AWHA 3FKHA 2D36A 2R0XA 1G78A 3CB0A 4Y9IA 3TGVA 3KYGA 3IN6A 3B5MA 5ESCA 5BNCA 3E4VA 2E83A 1WLIA 4Z85A 2QEAA 4R82A 4YBNA 1I0RA 2FG9A 4HMTA 5CHOA 2FURA 3R5RA 3PFTA 5CHEC 3ZOEA 1WV4A 3BPKA 1T9MA 1W3QA 4HMXA 3VY2A 1EJEA 1YLNA 4N7RC 2ASFA 3U35A 3AMFA 3R5YA 4QVBA 1YOAA 3K86A 1WGBA 3ZOFA 3R5PA 1NRGA 1VL7A 3DB0A 3R5WA 2GJGA 2RDEA 3R5LA 1W3OA 2PTFA 3HY8A 2IG6A 4F07A 4IRAA 2ED4A 1FLMA 2Q9KA 3K88A 3GASA 4XJ2A 4YWNA 3CP3A 1W3PA 2ARZA 3F7EA 2D38A 1G79A 3VY5A 2IMLA 1RZ1A 1XXOA 2IABA 1USCA 2X1JA 2HHZA 3K87A 2ECRA 3BA3A 2OL5A 3DMBA 3EC6A 2HTIA 3ZOCA 1WLKA 3ZODA 3VYAA 4HMUA
chains in the Genus database with same CATH superfamily
2HQ7A 4HMWA 2FHQA 2HTDA 1CI0A 3FGEA 2R6VA 2HQ9A 1Y30A 1I0SA 1W9AA 5JABA 3BNKA 4HMVA 4ZKYA 3ZOHA 4HX6A 1RZ0A 3U34A 3HMZA 1G76A 1TY9A 3SWJA 3U0IA 3KYFA 3ZOGA 2I02A 3A20A 2X1KA 1AXJA 1DNLA 2VPAA 3RH7A 2P5ZX 4HMSA 2NR4A 3A6QA 2I51A 2A2JA 1USFA 1XHNA 4L82A 2D5MA 4W64A 2ECUA 3R5ZA 2RE7A 2AQ6A 2QCKA 4TV4A 3A6RA 1W3RA 1G77A 3DNHA 2D37A 3H96A 3NFWA 3U5WA 1RFEA 2OU5A 4XHYA 1JNWA 3AWHA 3FKHA 2D36A 2GUJA 2R0XA 1G78A 3CB0A 3HE1A 4Y9IA 3TGVA 3KYGA 3IN6A 3B5MA 5ESCA 5BNCA 3E4VA 2E83A 1WLIA 4Z85A 2QEAA 4R82A 4YBNA 1I0RA 1Y12A 2FG9A 4HMTA 5CHOA 2FURA 3R5RA 3PFTA 5CHEC 3EAAA 3ZOEA 1WV4A 2L1TA 3BPKA 1T9MA 1W3QA 4HMXA 3VY2A 1EJEA 1YLNA 4N7RC 2ASFA 3U35A 3AMFA 3R5YA 4QVBA 1YOAA 3K86A 1WGBA 4HKHA 3ZOFA 3R5PA 1NRGA 1VL7A 3DB0A 3R5WA 2GJGA 2RDEA 3R5LA 1W3OA 2PTFA 3HY8A 2IG6A 4F07A 4IRAA 2ED4A 1FLMA 2Q9KA 3K88A 3GASA 4XJ2A 4YWNA 3CP3A 1W3PA 2ARZA 3F7EA 2D38A 1G79A 3VY5A 2IMLA 1RZ1A 1XXOA 2IABA 1USCA 3V4HA 4MTKA 4UHVA 2X1JA 2HHZA 3K87A 2ECRA 3BA3A 2OL5A 3DMBA 3EC6A 2HTIA 3ZOCA 1WLKA 2K4QA 3ZODA 3VYAA 4HMUA
chains in the Genus database with same CATH topology
2HQ7A 4HMWA 2FHQA 2HTDA 1CI0A 3FGEA 2R6VA 2HQ9A 1Y30A 1I0SA 1W9AA 5JABA 3BNKA 4HMVA 4ZKYA 3ZOHA 4HX6A 1RZ0A 3U34A 3HMZA 1G76A 1TY9A 3SWJA 3U0IA 3KYFA 3ZOGA 2I02A 3A20A 2X1KA 1AXJA 1DNLA 2VPAA 3RH7A 4HMSA 2NR4A 3A6QA 2I51A 2A2JA 1USFA 1XHNA 4L82A 2D5MA 2ECUA 3R5ZA 2RE7A 2AQ6A 2QCKA 3A6RA 1W3RA 1G77A 3DNHA 2D37A 3H96A 3NFWA 3U5WA 1RFEA 2OU5A 4XHYA 1JNWA 3AWHA 3FKHA 2D36A 2R0XA 1G78A 3CB0A 4Y9IA 3TGVA 3KYGA 3IN6A 3B5MA 5ESCA 5BNCA 3E4VA 2E83A 1WLIA 4Z85A 2QEAA 4R82A 4YBNA 1I0RA 2FG9A 4HMTA 5CHOA 2FURA 3R5RA 3PFTA 5CHEC 3ZOEA 1WV4A 3BPKA 1T9MA 1W3QA 4HMXA 3VY2A 1EJEA 1YLNA 4N7RC 2ASFA 3U35A 3AMFA 3R5YA 4QVBA 1YOAA 3K86A 1WGBA 3ZOFA 3R5PA 1NRGA 1VL7A 3DB0A 3R5WA 2GJGA 2RDEA 3R5LA 1W3OA 2PTFA 3HY8A 2IG6A 4F07A 4IRAA 2ED4A 1FLMA 2Q9KA 3K88A 3GASA 4XJ2A 4YWNA 3CP3A 1W3PA 2ARZA 3F7EA 2D38A 1G79A 3VY5A 2IMLA 1RZ1A 1XXOA 2IABA 1USCA 2X1JA 2HHZA 3K87A 2ECRA 3BA3A 2OL5A 3DMBA 3EC6A 2HTIA 3ZOCA 1WLKA 3ZODA 3VYAA 4HMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HQ7 A;  4HMW A;  2FHQ A;  2HTD A;  1CI0 A;  3FGE A;  2R6V A;  2HQ9 A;  1Y30 A;  1I0S A;  1W9A A;  5JAB A;  3BNK A;  4HMV A;  4ZKY A;  3ZOH A;  4HX6 A;  1RZ0 A;  3U34 A;  3HMZ A;  1G76 A;  1TY9 A;  3SWJ A;  3U0I A;  3KYF A;  3ZOG A;  2I02 A;  3A20 A;  2X1K A;  1AXJ A;  1DNL A;  2VPA A;  3RH7 A;  4HMS A;  2NR4 A;  3A6Q A;  2I51 A;  2A2J A;  1USF A;  1XHN A;  4L82 A;  2D5M A;  2ECU A;  3R5Z A;  2RE7 A;  2AQ6 A;  2QCK A;  3A6R A;  1W3R A;  1G77 A;  3DNH A;  2D37 A;  3H96 A;  3NFW A;  3U5W A;  1RFE A;  2OU5 A;  4XHY A;  1JNW A;  3AWH A;  3FKH A;  2D36 A;  2R0X A;  1G78 A;  3CB0 A;  4Y9I A;  3TGV A;  3KYG A;  3IN6 A;  3B5M A;  5ESC A;  5BNC A;  3E4V A;  2E83 A;  1WLI A;  4Z85 A;  2QEA A;  4R82 A;  4YBN A;  1I0R A;  2FG9 A;  4HMT A;  5CHO A;  2FUR A;  3R5R A;  3PFT A;  5CHE C;  3ZOE A;  1WV4 A;  3BPK A;  1T9M A;  1W3Q A;  4HMX A;  3VY2 A;  1EJE A;  1YLN A;  4N7R C;  2ASF A;  3U35 A;  3AMF A;  3R5Y A;  4QVB A;  1YOA A;  3K86 A;  1WGB A;  3ZOF A;  3R5P A;  1NRG A;  1VL7 A;  3DB0 A;  3R5W A;  2GJG A;  2RDE A;  3R5L A;  1W3O A;  2PTF A;  3HY8 A;  2IG6 A;  4F07 A;  4IRA A;  2ED4 A;  1FLM A;  2Q9K A;  3K88 A;  3GAS A;  4XJ2 A;  4YWN A;  3CP3 A;  1W3P A;  2ARZ A;  3F7E A;  2D38 A;  1G79 A;  3VY5 A;  2IML A;  1RZ1 A;  1XXO A;  2IAB A;  1USC A;  2X1J A;  2HHZ A;  3K87 A;  2ECR A;  3BA3 A;  2OL5 A;  3DMB A;  3EC6 A;  2HTI A;  3ZOC A;  1WLK A;  3ZOD A;  3VYA A;  4HMU A; 
#chains in the Genus database with same CATH topology
 2HQ7 A;  4HMW A;  2FHQ A;  2HTD A;  1CI0 A;  3FGE A;  2R6V A;  2HQ9 A;  1Y30 A;  1I0S A;  1W9A A;  5JAB A;  3BNK A;  4HMV A;  4ZKY A;  3ZOH A;  4HX6 A;  1RZ0 A;  3U34 A;  3HMZ A;  1G76 A;  1TY9 A;  3SWJ A;  3U0I A;  3KYF A;  3ZOG A;  2I02 A;  3A20 A;  2X1K A;  1AXJ A;  1DNL A;  2VPA A;  3RH7 A;  2P5Z X;  4HMS A;  2NR4 A;  3A6Q A;  2I51 A;  2A2J A;  1USF A;  1XHN A;  4L82 A;  2D5M A;  4W64 A;  2ECU A;  3R5Z A;  2RE7 A;  2AQ6 A;  2QCK A;  4TV4 A;  3A6R A;  1W3R A;  1G77 A;  3DNH A;  2D37 A;  3H96 A;  3NFW A;  3U5W A;  1RFE A;  2OU5 A;  4XHY A;  1JNW A;  3AWH A;  3FKH A;  2D36 A;  2GUJ A;  2R0X A;  1G78 A;  3CB0 A;  3HE1 A;  4Y9I A;  3TGV A;  3KYG A;  3IN6 A;  3B5M A;  5ESC A;  5BNC A;  3E4V A;  2E83 A;  1WLI A;  4Z85 A;  2QEA A;  4R82 A;  4YBN A;  1I0R A;  1Y12 A;  2FG9 A;  4HMT A;  5CHO A;  2FUR A;  3R5R A;  3PFT A;  5CHE C;  3EAA A;  3ZOE A;  1WV4 A;  2L1T A;  3BPK A;  1T9M A;  1W3Q A;  4HMX A;  3VY2 A;  1EJE A;  1YLN A;  4N7R C;  2ASF A;  3U35 A;  3AMF A;  3R5Y A;  4QVB A;  1YOA A;  3K86 A;  1WGB A;  4HKH A;  3ZOF A;  3R5P A;  1NRG A;  1VL7 A;  3DB0 A;  3R5W A;  2GJG A;  2RDE A;  3R5L A;  1W3O A;  2PTF A;  3HY8 A;  2IG6 A;  4F07 A;  4IRA A;  2ED4 A;  1FLM A;  2Q9K A;  3K88 A;  3GAS A;  4XJ2 A;  4YWN A;  3CP3 A;  1W3P A;  2ARZ A;  3F7E A;  2D38 A;  1G79 A;  3VY5 A;  2IML A;  1RZ1 A;  1XXO A;  2IAB A;  1USC A;  3V4H A;  4MTK A;  4UHV A;  2X1J A;  2HHZ A;  3K87 A;  2ECR A;  3BA3 A;  2OL5 A;  3DMB A;  3EC6 A;  2HTI A;  3ZOC A;  1WLK A;  2K4Q A;  3ZOD A;  3VYA A;  4HMU A; 
#chains in the Genus database with same CATH homology
 2HQ7 A;  4HMW A;  2FHQ A;  2HTD A;  1CI0 A;  3FGE A;  2R6V A;  2HQ9 A;  1Y30 A;  1I0S A;  1W9A A;  5JAB A;  3BNK A;  4HMV A;  4ZKY A;  3ZOH A;  4HX6 A;  1RZ0 A;  3U34 A;  3HMZ A;  1G76 A;  1TY9 A;  3SWJ A;  3U0I A;  3KYF A;  3ZOG A;  2I02 A;  3A20 A;  2X1K A;  1AXJ A;  1DNL A;  2VPA A;  3RH7 A;  4HMS A;  2NR4 A;  3A6Q A;  2I51 A;  2A2J A;  1USF A;  1XHN A;  4L82 A;  2D5M A;  2ECU A;  3R5Z A;  2RE7 A;  2AQ6 A;  2QCK A;  3A6R A;  1W3R A;  1G77 A;  3DNH A;  2D37 A;  3H96 A;  3NFW A;  3U5W A;  1RFE A;  2OU5 A;  4XHY A;  1JNW A;  3AWH A;  3FKH A;  2D36 A;  2R0X A;  1G78 A;  3CB0 A;  4Y9I A;  3TGV A;  3KYG A;  3IN6 A;  3B5M A;  5ESC A;  5BNC A;  3E4V A;  2E83 A;  1WLI A;  4Z85 A;  2QEA A;  4R82 A;  4YBN A;  1I0R A;  2FG9 A;  4HMT A;  5CHO A;  2FUR A;  3R5R A;  3PFT A;  5CHE C;  3ZOE A;  1WV4 A;  3BPK A;  1T9M A;  1W3Q A;  4HMX A;  3VY2 A;  1EJE A;  1YLN A;  4N7R C;  2ASF A;  3U35 A;  3AMF A;  3R5Y A;  4QVB A;  1YOA A;  3K86 A;  1WGB A;  3ZOF A;  3R5P A;  1NRG A;  1VL7 A;  3DB0 A;  3R5W A;  2GJG A;  2RDE A;  3R5L A;  1W3O A;  2PTF A;  3HY8 A;  2IG6 A;  4F07 A;  4IRA A;  2ED4 A;  1FLM A;  2Q9K A;  3K88 A;  3GAS A;  4XJ2 A;  4YWN A;  3CP3 A;  1W3P A;  2ARZ A;  3F7E A;  2D38 A;  1G79 A;  3VY5 A;  2IML A;  1RZ1 A;  1XXO A;  2IAB A;  1USC A;  2X1J A;  2HHZ A;  3K87 A;  2ECR A;  3BA3 A;  2OL5 A;  3DMB A;  3EC6 A;  2HTI A;  3ZOC A;  1WLK A;  3ZOD A;  3VYA A;  4HMU A; 
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