4ZKY | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	139
structure length	139
Chain Sequence	FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Mycobacterium smegmatis
publication title	Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria. pubmed doi rcsb
molecule keywords	Pyridoxamine 5-phosphate oxidase
total genus	33
structure length	139
sequence length	139
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	2015-05-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	4zkyA00

2X1KA 3PFTA 1G79A 3FKHA 1WLIA 4Y9IA 1W3RA 1G78A 1XHNA 3VY2A 3ZODA 1W3QA 4R82A 5BNCA 1T9MA 2ECUA 3CB0A 2ARZA 1YLNA 2R6VA 1G77A 1WV4A 3BPKA 4HMUA 2D5MA 2HHZA 3BA3A 2FG9A 2OL5A 1I0RA 1RFEA 3TGVA 2A2JA 3A6QA 3R5YA 4ZKYA 1I0SA 2D38A 5CHOA 3U34A 2OU5A 2I02A 1NRGA 1DNLA 1USFA 2IMLA 2VPAA 3BNKA 3K88A 4HMVA 2HQ9A 2ASFA 1TY9A 2IABA 3K87A 3SWJA 3VYAA 3E4VA 3GASA 4HX6A 1RZ1A 3FGEA 2E83A 2RDEA 2FHQA 1W3PA 3AMFA 2R0XA 3EC6A 3R5WA 3U35A 2GJGA 3AWHA 1USCA 3R5LA 3DB0A 4N7RC 4Z85A 2AQ6A 2D36A 3A6RA 3R5ZA 3B5MA 1XXOA 1WGBA 4F07A 1JNWA 2I51A 1W9AA 3K86A 4HMWA 3ZOHA 4XJ2A 3RH7A 1FLMA 1EJEA 3F7EA 2FURA 2X1JA 1RZ0A 4YWNA 3IN6A 3VY5A 2PTFA 3DNHA 2Q9KA 2ED4A 3R5RA 1VL7A 2HTIA 1AXJA 2IG6A 4YBNA 3U0IA 1W3OA 2QCKA 4HMSA 3ZOGA 3ZOFA 1CI0A 1G76A 2HTDA 4QVBA 3DMBA 3CP3A 3U5WA 5ESCA 4XHYA 3ZOCA 3A20A 4IRAA 3H96A 3KYGA 2HQ7A 4HMTA 2ECRA 3HY8A 2D37A 2NR4A 3R5PA 2QEAA 3KYFA 4L82A 1WLKA 2RE7A 3NFWA 1Y30A 3HMZA 4HMXA 5CHEC 5JABA 3ZOEA 1YOAA
chains in the Genus database with same CATH superfamily

2X1KA 3PFTA 1G79A 3FKHA 1WLIA 4Y9IA 1W3RA 1G78A 1XHNA 3VY2A 3ZODA 1W3QA 4R82A 5BNCA 1T9MA 2ECUA 3CB0A 2ARZA 1YLNA 2R6VA 1G77A 1WV4A 3BPKA 4HMUA 2D5MA 2HHZA 3BA3A 2FG9A 4MTKA 2OL5A 1I0RA 1RFEA 4TV4A 3TGVA 2A2JA 3A6QA 3R5YA 4ZKYA 1I0SA 2D38A 4W64A 5CHOA 3U34A 2OU5A 2I02A 1NRGA 1DNLA 1USFA 2IMLA 2VPAA 3BNKA 3K88A 4HMVA 2HQ9A 2P5ZX 2ASFA 1TY9A 2IABA 3K87A 3SWJA 3VYAA 3E4VA 3GASA 4HX6A 1RZ1A 3FGEA 2E83A 2RDEA 2FHQA 1W3PA 3AMFA 2R0XA 3EC6A 3R5WA 3U35A 2GJGA 3AWHA 1USCA 3R5LA 3DB0A 4N7RC 4Z85A 2AQ6A 2D36A 2GUJA 3A6RA 3R5ZA 3B5MA 1XXOA 1WGBA 2K4QA 1JNWA 2I51A 3HE1A 4F07A 1W9AA 3K86A 4HMWA 3ZOHA 4XJ2A 3RH7A 1FLMA 1EJEA 3F7EA 2FURA 2X1JA 4HKHA 1Y12A 1RZ0A 4YWNA 3IN6A 3VY5A 2PTFA 3DNHA 2Q9KA 2ED4A 3R5RA 1VL7A 2HTIA 1AXJA 2IG6A 4YBNA 3U0IA 4UHVA 1W3OA 2QCKA 4HMSA 3ZOGA 3ZOFA 1CI0A 1G76A 3V4HA 2HTDA 4QVBA 2L1TA 3DMBA 3CP3A 3U5WA 5ESCA 4XHYA 3EAAA 3A20A 3ZOCA 4IRAA 3H96A 3KYGA 2HQ7A 4HMTA 2ECRA 3HY8A 2D37A 2NR4A 3R5PA 2QEAA 3KYFA 4L82A 1WLKA 2RE7A 3NFWA 1Y30A 3HMZA 4HMXA 5CHEC 5JABA 3ZOEA 1YOAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2X1K A;  3PFT A;  1G79 A;  3FKH A;  1WLI A;  4Y9I A;  1W3R A;  1G78 A;  1XHN A;  3VY2 A;  3ZOD A;  1W3Q A;  4R82 A;  5BNC A;  1T9M A;  2ECU A;  3CB0 A;  2ARZ A;  1YLN A;  2R6V A;  1G77 A;  1WV4 A;  3BPK A;  4HMU A;  2D5M A;  2HHZ A;  3BA3 A;  2FG9 A;  2OL5 A;  1I0R A;  1RFE A;  3TGV A;  2A2J A;  3A6Q A;  3R5Y A;  4ZKY A;  1I0S A;  2D38 A;  5CHO A;  3U34 A;  2OU5 A;  2I02 A;  1NRG A;  1DNL A;  1USF A;  2IML A;  2VPA A;  3BNK A;  3K88 A;  4HMV A;  2HQ9 A;  2ASF A;  1TY9 A;  2IAB A;  3K87 A;  3SWJ A;  3VYA A;  3E4V A;  3GAS A;  4HX6 A;  1RZ1 A;  3FGE A;  2E83 A;  2RDE A;  2FHQ A;  1W3P A;  3AMF A;  2R0X A;  3EC6 A;  3R5W A;  3U35 A;  2GJG A;  3AWH A;  1USC A;  3R5L A;  3DB0 A;  4N7R C;  4Z85 A;  2AQ6 A;  2D36 A;  3A6R A;  3R5Z A;  3B5M A;  1XXO A;  1WGB A;  4F07 A;  1JNW A;  2I51 A;  1W9A A;  3K86 A;  4HMW A;  3ZOH A;  4XJ2 A;  3RH7 A;  1FLM A;  1EJE A;  3F7E A;  2FUR A;  2X1J A;  1RZ0 A;  4YWN A;  3IN6 A;  3VY5 A;  2PTF A;  3DNH A;  2Q9K A;  2ED4 A;  3R5R A;  1VL7 A;  2HTI A;  1AXJ A;  2IG6 A;  4YBN A;  3U0I A;  1W3O A;  2QCK A;  4HMS A;  3ZOG A;  3ZOF A;  1CI0 A;  1G76 A;  2HTD A;  4QVB A;  3DMB A;  3CP3 A;  3U5W A;  5ESC A;  4XHY A;  3ZOC A;  3A20 A;  4IRA A;  3H96 A;  3KYG A;  2HQ7 A;  4HMT A;  2ECR A;  3HY8 A;  2D37 A;  2NR4 A;  3R5P A;  2QEA A;  3KYF A;  4L82 A;  1WLK A;  2RE7 A;  3NFW A;  1Y30 A;  3HMZ A;  4HMX A;  5CHE C;  5JAB A;  3ZOE A;  1YOA A; 
#chains in the Genus database with same CATH topology
 2X1K A;  3PFT A;  1G79 A;  3FKH A;  1WLI A;  4Y9I A;  1W3R A;  1G78 A;  1XHN A;  3VY2 A;  3ZOD A;  1W3Q A;  4R82 A;  5BNC A;  1T9M A;  2ECU A;  3CB0 A;  2ARZ A;  1YLN A;  2R6V A;  1G77 A;  1WV4 A;  3BPK A;  4HMU A;  2D5M A;  2HHZ A;  3BA3 A;  2FG9 A;  4MTK A;  2OL5 A;  1I0R A;  1RFE A;  4TV4 A;  3TGV A;  2A2J A;  3A6Q A;  3R5Y A;  4ZKY A;  1I0S A;  2D38 A;  4W64 A;  5CHO A;  3U34 A;  2OU5 A;  2I02 A;  1NRG A;  1DNL A;  1USF A;  2IML A;  2VPA A;  3BNK A;  3K88 A;  4HMV A;  2HQ9 A;  2P5Z X;  2ASF A;  1TY9 A;  2IAB A;  3K87 A;  3SWJ A;  3VYA A;  3E4V A;  3GAS A;  4HX6 A;  1RZ1 A;  3FGE A;  2E83 A;  2RDE A;  2FHQ A;  1W3P A;  3AMF A;  2R0X A;  3EC6 A;  3R5W A;  3U35 A;  2GJG A;  3AWH A;  1USC A;  3R5L A;  3DB0 A;  4N7R C;  4Z85 A;  2AQ6 A;  2D36 A;  2GUJ A;  3A6R A;  3R5Z A;  3B5M A;  1XXO A;  1WGB A;  2K4Q A;  1JNW A;  2I51 A;  3HE1 A;  4F07 A;  1W9A A;  3K86 A;  4HMW A;  3ZOH A;  4XJ2 A;  3RH7 A;  1FLM A;  1EJE A;  3F7E A;  2FUR A;  2X1J A;  4HKH A;  1Y12 A;  1RZ0 A;  4YWN A;  3IN6 A;  3VY5 A;  2PTF A;  3DNH A;  2Q9K A;  2ED4 A;  3R5R A;  1VL7 A;  2HTI A;  1AXJ A;  2IG6 A;  4YBN A;  3U0I A;  4UHV A;  1W3O A;  2QCK A;  4HMS A;  3ZOG A;  3ZOF A;  1CI0 A;  1G76 A;  3V4H A;  2HTD A;  4QVB A;  2L1T A;  3DMB A;  3CP3 A;  3U5W A;  5ESC A;  4XHY A;  3EAA A;  3A20 A;  3ZOC A;  4IRA A;  3H96 A;  3KYG A;  2HQ7 A;  4HMT A;  2ECR A;  3HY8 A;  2D37 A;  2NR4 A;  3R5P A;  2QEA A;  3KYF A;  4L82 A;  1WLK A;  2RE7 A;  3NFW A;  1Y30 A;  3HMZ A;  4HMX A;  5CHE C;  5JAB A;  3ZOE A;  1YOA A; 
#chains in the Genus database with same CATH homology
 2X1K A;  3PFT A;  1G79 A;  3FKH A;  1WLI A;  4Y9I A;  1W3R A;  1G78 A;  1XHN A;  3VY2 A;  3ZOD A;  1W3Q A;  4R82 A;  5BNC A;  1T9M A;  2ECU A;  3CB0 A;  2ARZ A;  1YLN A;  2R6V A;  1G77 A;  1WV4 A;  3BPK A;  4HMU A;  2D5M A;  2HHZ A;  3BA3 A;  2FG9 A;  2OL5 A;  1I0R A;  1RFE A;  3TGV A;  2A2J A;  3A6Q A;  3R5Y A;  4ZKY A;  1I0S A;  2D38 A;  5CHO A;  3U34 A;  2OU5 A;  2I02 A;  1NRG A;  1DNL A;  1USF A;  2IML A;  2VPA A;  3BNK A;  3K88 A;  4HMV A;  2HQ9 A;  2ASF A;  1TY9 A;  2IAB A;  3K87 A;  3SWJ A;  3VYA A;  3E4V A;  3GAS A;  4HX6 A;  1RZ1 A;  3FGE A;  2E83 A;  2RDE A;  2FHQ A;  1W3P A;  3AMF A;  2R0X A;  3EC6 A;  3R5W A;  3U35 A;  2GJG A;  3AWH A;  1USC A;  3R5L A;  3DB0 A;  4N7R C;  4Z85 A;  2AQ6 A;  2D36 A;  3A6R A;  3R5Z A;  3B5M A;  1XXO A;  1WGB A;  4F07 A;  1JNW A;  2I51 A;  1W9A A;  3K86 A;  4HMW A;  3ZOH A;  4XJ2 A;  3RH7 A;  1FLM A;  1EJE A;  3F7E A;  2FUR A;  2X1J A;  1RZ0 A;  4YWN A;  3IN6 A;  3VY5 A;  2PTF A;  3DNH A;  2Q9K A;  2ED4 A;  3R5R A;  1VL7 A;  2HTI A;  1AXJ A;  2IG6 A;  4YBN A;  3U0I A;  1W3O A;  2QCK A;  4HMS A;  3ZOG A;  3ZOF A;  1CI0 A;  1G76 A;  2HTD A;  4QVB A;  3DMB A;  3CP3 A;  3U5W A;  5ESC A;  4XHY A;  3ZOC A;  3A20 A;  4IRA A;  3H96 A;  3KYG A;  2HQ7 A;  4HMT A;  2ECR A;  3HY8 A;  2D37 A;  2NR4 A;  3R5P A;  2QEA A;  3KYF A;  4L82 A;  1WLK A;  2RE7 A;  3NFW A;  1Y30 A;  3HMZ A;  4HMX A;  5CHE C;  5JAB A;  3ZOE A;  1YOA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4ZKYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations