4ZKYA

Structure of f420 binding protein, msmeg_6526, from mycobacterium smegmatis
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
139
structure length
139
Chain Sequence
FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-12)S2 (27-32)S4 (47-51)EMPTYTIV2 (41-44)S7 (129-141)TII1 (55-58)AH2 (62-70)TIV3 (56-59)S6 (89-100)S5 (73-80)TI3 (85-88)TI2 (84-87)TVIII1 (82-85)AH3 (104-116)3H1 (118-121)S1 (16-21)TI1 (22-25)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Mycobacterium smegmatis
publication title Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb
molecule keywords Pyridoxamine 5-phosphate oxidase
total genus 33
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2015-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4zkyA00
5CHEC 3SWJA 3GASA 2ED4A 4F07A 1YOAA 3VY5A 2HQ9A 3R5YA 2E83A 3A6RA 5JABA 1G79A 1I0SA 1JNWA 1DNLA 3K87A 3KYFA 1XXOA 2IMLA 3BNKA 3U34A 4Z85A 4YWNA 4XJ2A 2Q9KA 4ZKYA 5CHOA 3FKHA 2HHZA 2QCKA 2R0XA 3FGEA 2OL5A 3R5ZA 3ZOGA 2HQ7A 5ESCA 2FG9A 4R82A 3U35A 3R5RA 1RFEA 2PTFA 1CI0A 1WV4A 3AWHA 3K88A 3ZOHA 3NFWA 3DNHA 3K86A 3EC6A 4HMTA 2R6VA 4HMUA 3PFTA 4N7RC 3ZODA 3CP3A 2GJGA 1USCA 3VYAA 3TGVA 1VL7A 1WLKA 1RZ1A 4XHYA 3ZOEA 2D38A 3DB0A 3E4VA 2D37A 1TY9A 1W3RA 3KYGA 1T9MA 3HMZA 3F7EA 1I0RA 2RDEA 1W3QA 3H96A 2D5MA 4HMVA 2X1JA 2NR4A 3A6QA 1WGBA 3ZOFA 4L82A 1G78A 1USFA 2VPAA 2A2JA 2QEAA 2HTDA 4HX6A 3A20A 1EJEA 3DMBA 3R5LA 1AXJA 1Y30A 1G77A 2ECUA 1WLIA 2FHQA 3ZOCA 1NRGA 1G76A 2HTIA 2ECRA 2OU5A 2I51A 5BNCA 4HMSA 1W9AA 1RZ0A 2AQ6A 3CB0A 3R5WA 1XHNA 2RE7A 2X1KA 4QVBA 4Y9IA 3U5WA 2I02A 2ARZA 4YBNA 3R5PA 3U0IA 3BPKA 4HMXA 2IABA 1W3PA 4IRAA 3RH7A 2FURA 3BA3A 2D36A 4HMWA 2ASFA 1FLMA 1YLNA 3IN6A 1W3OA 3B5MA 3VY2A 3HY8A 2IG6A 3AMFA
chains in the Genus database with same CATH superfamily
5CHEC 3SWJA 3GASA 2ED4A 4F07A 3AMFA 1YOAA 3VY5A 2HQ9A 3R5YA 2E83A 3A6RA 3EAAA 4UHVA 1G79A 1I0SA 1JNWA 1DNLA 5JABA 3K87A 3KYFA 1XXOA 2IMLA 3BNKA 3U34A 4Z85A 4YWNA 4XJ2A 2Q9KA 4ZKYA 5CHOA 3FKHA 3V4HA 2HHZA 2QCKA 2R0XA 3FGEA 2OL5A 3R5ZA 3ZOGA 2HQ7A 4MTKA 4HKHA 5ESCA 2FG9A 4R82A 3U35A 3R5RA 1RFEA 2PTFA 1CI0A 1WV4A 3AWHA 3K88A 3ZOHA 3NFWA 3DNHA 3K86A 3EC6A 4HMTA 2R6VA 4HMUA 3PFTA 4N7RC 3ZODA 3CP3A 2GUJA 2GJGA 1USCA 3VYAA 3TGVA 1VL7A 1WLKA 1RZ1A 4XHYA 3ZOEA 2D38A 3DB0A 2K4QA 3E4VA 2D37A 1TY9A 1W3RA 3KYGA 1T9MA 3HMZA 2P5ZX 3F7EA 1I0RA 2RDEA 1W3QA 3H96A 2L1TA 2D5MA 4HMVA 2X1JA 3HE1A 2NR4A 3A6QA 1WGBA 3ZOFA 4L82A 1G78A 1USFA 2VPAA 2A2JA 4TV4A 2QEAA 2HTDA 4HX6A 3A20A 1EJEA 3DMBA 3R5LA 1AXJA 1Y30A 1G77A 2ECUA 1WLIA 2FHQA 3ZOCA 1NRGA 1G76A 2HTIA 2ECRA 2OU5A 2I51A 5BNCA 4HMSA 1W9AA 1RZ0A 2AQ6A 3CB0A 3R5WA 1XHNA 2RE7A 2X1KA 4QVBA 4Y9IA 3U5WA 2I02A 2ARZA 4YBNA 3R5PA 3U0IA 3BPKA 4HMXA 2IABA 1W3PA 4IRAA 3RH7A 2FURA 3BA3A 4W64A 2D36A 4HMWA 2ASFA 1FLMA 1YLNA 3IN6A 1W3OA 3B5MA 3VY2A 3HY8A 2IG6A 1Y12A
chains in the Genus database with same CATH topology
5CHEC 3SWJA 3GASA 2ED4A 4F07A 1YOAA 3VY5A 2HQ9A 3R5YA 2E83A 3A6RA 5JABA 1G79A 1I0SA 1JNWA 1DNLA 3K87A 3KYFA 1XXOA 2IMLA 3BNKA 3U34A 4Z85A 4YWNA 4XJ2A 2Q9KA 4ZKYA 5CHOA 3FKHA 2HHZA 2QCKA 2R0XA 3FGEA 2OL5A 3R5ZA 3ZOGA 2HQ7A 5ESCA 2FG9A 4R82A 3U35A 3R5RA 1RFEA 2PTFA 1CI0A 1WV4A 3AWHA 3K88A 3ZOHA 3NFWA 3DNHA 3K86A 3EC6A 4HMTA 2R6VA 4HMUA 3PFTA 4N7RC 3ZODA 3CP3A 2GJGA 1USCA 3VYAA 3TGVA 1VL7A 1WLKA 1RZ1A 4XHYA 3ZOEA 2D38A 3DB0A 3E4VA 2D37A 1TY9A 1W3RA 3KYGA 1T9MA 3HMZA 3F7EA 1I0RA 2RDEA 1W3QA 3H96A 2D5MA 4HMVA 2X1JA 2NR4A 3A6QA 1WGBA 3ZOFA 4L82A 1G78A 1USFA 2VPAA 2A2JA 2QEAA 2HTDA 4HX6A 3A20A 1EJEA 3DMBA 3R5LA 1AXJA 1Y30A 1G77A 2ECUA 1WLIA 2FHQA 3ZOCA 1NRGA 1G76A 2HTIA 2ECRA 2OU5A 2I51A 5BNCA 4HMSA 1W9AA 1RZ0A 2AQ6A 3CB0A 3R5WA 1XHNA 2RE7A 2X1KA 4QVBA 4Y9IA 3U5WA 2I02A 2ARZA 4YBNA 3R5PA 3U0IA 3BPKA 4HMXA 2IABA 1W3PA 4IRAA 3RH7A 2FURA 3BA3A 2D36A 4HMWA 2ASFA 1FLMA 1YLNA 3IN6A 1W3OA 3B5MA 3VY2A 3HY8A 2IG6A 3AMFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CHE C;  3SWJ A;  3GAS A;  2ED4 A;  4F07 A;  1YOA A;  3VY5 A;  2HQ9 A;  3R5Y A;  2E83 A;  3A6R A;  5JAB A;  1G79 A;  1I0S A;  1JNW A;  1DNL A;  3K87 A;  3KYF A;  1XXO A;  2IML A;  3BNK A;  3U34 A;  4Z85 A;  4YWN A;  4XJ2 A;  2Q9K A;  4ZKY A;  5CHO A;  3FKH A;  2HHZ A;  2QCK A;  2R0X A;  3FGE A;  2OL5 A;  3R5Z A;  3ZOG A;  2HQ7 A;  5ESC A;  2FG9 A;  4R82 A;  3U35 A;  3R5R A;  1RFE A;  2PTF A;  1CI0 A;  1WV4 A;  3AWH A;  3K88 A;  3ZOH A;  3NFW A;  3DNH A;  3K86 A;  3EC6 A;  4HMT A;  2R6V A;  4HMU A;  3PFT A;  4N7R C;  3ZOD A;  3CP3 A;  2GJG A;  1USC A;  3VYA A;  3TGV A;  1VL7 A;  1WLK A;  1RZ1 A;  4XHY A;  3ZOE A;  2D38 A;  3DB0 A;  3E4V A;  2D37 A;  1TY9 A;  1W3R A;  3KYG A;  1T9M A;  3HMZ A;  3F7E A;  1I0R A;  2RDE A;  1W3Q A;  3H96 A;  2D5M A;  4HMV A;  2X1J A;  2NR4 A;  3A6Q A;  1WGB A;  3ZOF A;  4L82 A;  1G78 A;  1USF A;  2VPA A;  2A2J A;  2QEA A;  2HTD A;  4HX6 A;  3A20 A;  1EJE A;  3DMB A;  3R5L A;  1AXJ A;  1Y30 A;  1G77 A;  2ECU A;  1WLI A;  2FHQ A;  3ZOC A;  1NRG A;  1G76 A;  2HTI A;  2ECR A;  2OU5 A;  2I51 A;  5BNC A;  4HMS A;  1W9A A;  1RZ0 A;  2AQ6 A;  3CB0 A;  3R5W A;  1XHN A;  2RE7 A;  2X1K A;  4QVB A;  4Y9I A;  3U5W A;  2I02 A;  2ARZ A;  4YBN A;  3R5P A;  3U0I A;  3BPK A;  4HMX A;  2IAB A;  1W3P A;  4IRA A;  3RH7 A;  2FUR A;  3BA3 A;  2D36 A;  4HMW A;  2ASF A;  1FLM A;  1YLN A;  3IN6 A;  1W3O A;  3B5M A;  3VY2 A;  3HY8 A;  2IG6 A;  3AMF A; 
#chains in the Genus database with same CATH topology
 5CHE C;  3SWJ A;  3GAS A;  2ED4 A;  4F07 A;  3AMF A;  1YOA A;  3VY5 A;  2HQ9 A;  3R5Y A;  2E83 A;  3A6R A;  3EAA A;  4UHV A;  1G79 A;  1I0S A;  1JNW A;  1DNL A;  5JAB A;  3K87 A;  3KYF A;  1XXO A;  2IML A;  3BNK A;  3U34 A;  4Z85 A;  4YWN A;  4XJ2 A;  2Q9K A;  4ZKY A;  5CHO A;  3FKH A;  3V4H A;  2HHZ A;  2QCK A;  2R0X A;  3FGE A;  2OL5 A;  3R5Z A;  3ZOG A;  2HQ7 A;  4MTK A;  4HKH A;  5ESC A;  2FG9 A;  4R82 A;  3U35 A;  3R5R A;  1RFE A;  2PTF A;  1CI0 A;  1WV4 A;  3AWH A;  3K88 A;  3ZOH A;  3NFW A;  3DNH A;  3K86 A;  3EC6 A;  4HMT A;  2R6V A;  4HMU A;  3PFT A;  4N7R C;  3ZOD A;  3CP3 A;  2GUJ A;  2GJG A;  1USC A;  3VYA A;  3TGV A;  1VL7 A;  1WLK A;  1RZ1 A;  4XHY A;  3ZOE A;  2D38 A;  3DB0 A;  2K4Q A;  3E4V A;  2D37 A;  1TY9 A;  1W3R A;  3KYG A;  1T9M A;  3HMZ A;  2P5Z X;  3F7E A;  1I0R A;  2RDE A;  1W3Q A;  3H96 A;  2L1T A;  2D5M A;  4HMV A;  2X1J A;  3HE1 A;  2NR4 A;  3A6Q A;  1WGB A;  3ZOF A;  4L82 A;  1G78 A;  1USF A;  2VPA A;  2A2J A;  4TV4 A;  2QEA A;  2HTD A;  4HX6 A;  3A20 A;  1EJE A;  3DMB A;  3R5L A;  1AXJ A;  1Y30 A;  1G77 A;  2ECU A;  1WLI A;  2FHQ A;  3ZOC A;  1NRG A;  1G76 A;  2HTI A;  2ECR A;  2OU5 A;  2I51 A;  5BNC A;  4HMS A;  1W9A A;  1RZ0 A;  2AQ6 A;  3CB0 A;  3R5W A;  1XHN A;  2RE7 A;  2X1K A;  4QVB A;  4Y9I A;  3U5W A;  2I02 A;  2ARZ A;  4YBN A;  3R5P A;  3U0I A;  3BPK A;  4HMX A;  2IAB A;  1W3P A;  4IRA A;  3RH7 A;  2FUR A;  3BA3 A;  4W64 A;  2D36 A;  4HMW A;  2ASF A;  1FLM A;  1YLN A;  3IN6 A;  1W3O A;  3B5M A;  3VY2 A;  3HY8 A;  2IG6 A;  1Y12 A; 
#chains in the Genus database with same CATH homology
 5CHE C;  3SWJ A;  3GAS A;  2ED4 A;  4F07 A;  1YOA A;  3VY5 A;  2HQ9 A;  3R5Y A;  2E83 A;  3A6R A;  5JAB A;  1G79 A;  1I0S A;  1JNW A;  1DNL A;  3K87 A;  3KYF A;  1XXO A;  2IML A;  3BNK A;  3U34 A;  4Z85 A;  4YWN A;  4XJ2 A;  2Q9K A;  4ZKY A;  5CHO A;  3FKH A;  2HHZ A;  2QCK A;  2R0X A;  3FGE A;  2OL5 A;  3R5Z A;  3ZOG A;  2HQ7 A;  5ESC A;  2FG9 A;  4R82 A;  3U35 A;  3R5R A;  1RFE A;  2PTF A;  1CI0 A;  1WV4 A;  3AWH A;  3K88 A;  3ZOH A;  3NFW A;  3DNH A;  3K86 A;  3EC6 A;  4HMT A;  2R6V A;  4HMU A;  3PFT A;  4N7R C;  3ZOD A;  3CP3 A;  2GJG A;  1USC A;  3VYA A;  3TGV A;  1VL7 A;  1WLK A;  1RZ1 A;  4XHY A;  3ZOE A;  2D38 A;  3DB0 A;  3E4V A;  2D37 A;  1TY9 A;  1W3R A;  3KYG A;  1T9M A;  3HMZ A;  3F7E A;  1I0R A;  2RDE A;  1W3Q A;  3H96 A;  2D5M A;  4HMV A;  2X1J A;  2NR4 A;  3A6Q A;  1WGB A;  3ZOF A;  4L82 A;  1G78 A;  1USF A;  2VPA A;  2A2J A;  2QEA A;  2HTD A;  4HX6 A;  3A20 A;  1EJE A;  3DMB A;  3R5L A;  1AXJ A;  1Y30 A;  1G77 A;  2ECU A;  1WLI A;  2FHQ A;  3ZOC A;  1NRG A;  1G76 A;  2HTI A;  2ECR A;  2OU5 A;  2I51 A;  5BNC A;  4HMS A;  1W9A A;  1RZ0 A;  2AQ6 A;  3CB0 A;  3R5W A;  1XHN A;  2RE7 A;  2X1K A;  4QVB A;  4Y9I A;  3U5W A;  2I02 A;  2ARZ A;  4YBN A;  3R5P A;  3U0I A;  3BPK A;  4HMX A;  2IAB A;  1W3P A;  4IRA A;  3RH7 A;  2FUR A;  3BA3 A;  2D36 A;  4HMW A;  2ASF A;  1FLM A;  1YLN A;  3IN6 A;  1W3O A;  3B5M A;  3VY2 A;  3HY8 A;  2IG6 A;  3AMF A; 
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