4ZKYA

Structure of f420 binding protein, msmeg_6526, from mycobacterium smegmatis
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
139
structure length
139
Chain Sequence
FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-12)S2 (27-32)S4 (47-51)EMPTYTIV2 (41-44)S7 (129-141)TII1 (55-58)AH2 (62-70)TIV3 (56-59)S6 (89-100)S5 (73-80)TI3 (85-88)TI2 (84-87)TVIII1 (82-85)AH3 (104-116)3H1 (118-121)S1 (16-21)TI1 (22-25)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Mycobacterium smegmatis
publication title Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb
molecule keywords Pyridoxamine 5-phosphate oxidase
total genus 33
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2015-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4zkyA00
1G77A 4HMWA 4Y9IA 2HHZA 5CHOA 2I51A 2ECUA 1XHNA 1YLNA 3CP3A 3DB0A 2IABA 3VY5A 3F7EA 4Z85A 2X1JA 2ARZA 3HMZA 1VL7A 3K86A 2IG6A 3U5WA 3H96A 4HMXA 2RDEA 3ZOHA 3VY2A 4F07A 4N7RC 2HQ7A 3ZOEA 3FGEA 1G79A 1USFA 2R0XA 1G76A 2ASFA 2HQ9A 1Y30A 2A2JA 3GASA 4HMUA 4R82A 3B5MA 2D5MA 4YBNA 2VPAA 4ZKYA 1USCA 2AQ6A 3ZOCA 3ZOFA 3HY8A 1I0SA 1RZ1A 5JABA 3VYAA 2QEAA 3IN6A 4XHYA 4HX6A 3DMBA 2Q9KA 5CHEC 1DNLA 4HMTA 2R6VA 1W3OA 2ECRA 1TY9A 3A6QA 2E83A 2FHQA 3E4VA 3R5RA 3R5ZA 2NR4A 3U35A 3FKHA 2I02A 1W3RA 2D38A 3EC6A 2HTDA 2RE7A 1WLKA 1W9AA 2X1KA 3AMFA 1G78A 3A20A 4XJ2A 1I0RA 4QVBA 3U0IA 2PTFA 3BNKA 2FURA 3KYFA 3R5PA 3PFTA 3BA3A 3R5LA 3RH7A 1EJEA 2IMLA 3U34A 1XXOA 2ED4A 3R5WA 2D37A 3AWHA 2GJGA 2D36A 1NRGA 1WLIA 3R5YA 3K88A 1RFEA 1FLMA 3CB0A 4L82A 3TGVA 1WGBA 4HMSA 3SWJA 3A6RA 1AXJA 1CI0A 3K87A 1JNWA 2OL5A 3ZODA 5BNCA 2HTIA 2QCKA 3BPKA 1WV4A 3NFWA 1W3PA 1RZ0A 2FG9A 4YWNA 3ZOGA 5ESCA 2OU5A 4HMVA 1YOAA 1T9MA 1W3QA 4IRAA 3DNHA 3KYGA
chains in the Genus database with same CATH superfamily
1G77A 4HMWA 4W64A 4Y9IA 2L1TA 3EAAA 2HHZA 5CHOA 2I51A 2ECUA 1XHNA 1YLNA 3CP3A 3DB0A 2IABA 3VY5A 3F7EA 4Z85A 2X1JA 2ARZA 3HMZA 1VL7A 3K86A 2IG6A 3U5WA 3H96A 4HMXA 2RDEA 3ZOHA 3VY2A 4F07A 4N7RC 2HQ7A 3ZOEA 3FGEA 1G79A 1USFA 2R0XA 1G76A 2P5ZX 2ASFA 2HQ9A 1Y30A 2A2JA 3GASA 4HMUA 4R82A 3B5MA 2D5MA 4YBNA 2VPAA 4ZKYA 1USCA 2AQ6A 3ZOCA 3ZOFA 3HY8A 1I0SA 1RZ1A 5JABA 3VYAA 2QEAA 3IN6A 3HE1A 4XHYA 4HX6A 3DMBA 2Q9KA 5CHEC 1DNLA 4HMTA 4TV4A 2R6VA 1W3OA 2ECRA 1TY9A 3A6QA 2E83A 2FHQA 3E4VA 3R5RA 3R5ZA 2NR4A 3U35A 1Y12A 3FKHA 2I02A 1W3RA 2D38A 3EC6A 2HTDA 2RE7A 1WLKA 1W9AA 2K4QA 2X1KA 1G78A 3AMFA 3A20A 4XJ2A 1I0RA 4QVBA 3U0IA 2PTFA 3BNKA 2FURA 3KYFA 3R5PA 3PFTA 3BA3A 3R5LA 3RH7A 1EJEA 2IMLA 3U34A 1XXOA 2ED4A 3R5WA 2D37A 3AWHA 2GJGA 2D36A 1NRGA 1WLIA 3R5YA 4MTKA 3K88A 1RFEA 1FLMA 3CB0A 4L82A 3TGVA 1WGBA 4HMSA 3SWJA 3A6RA 1AXJA 1CI0A 3K87A 3V4HA 1JNWA 2OL5A 3ZODA 5BNCA 2GUJA 2HTIA 2QCKA 4UHVA 3BPKA 1WV4A 3NFWA 1W3PA 1RZ0A 2FG9A 4YWNA 3ZOGA 5ESCA 4HKHA 2OU5A 4HMVA 1YOAA 1T9MA 1W3QA 4IRAA 3DNHA 3KYGA
chains in the Genus database with same CATH topology
1G77A 4HMWA 4Y9IA 2HHZA 5CHOA 2I51A 2ECUA 1XHNA 1YLNA 3CP3A 3DB0A 2IABA 3VY5A 3F7EA 4Z85A 2X1JA 2ARZA 3HMZA 1VL7A 3K86A 2IG6A 3U5WA 3H96A 4HMXA 2RDEA 3ZOHA 3VY2A 4F07A 4N7RC 2HQ7A 3ZOEA 3FGEA 1G79A 1USFA 2R0XA 1G76A 2ASFA 2HQ9A 1Y30A 2A2JA 3GASA 4HMUA 4R82A 3B5MA 2D5MA 4YBNA 2VPAA 4ZKYA 1USCA 2AQ6A 3ZOCA 3ZOFA 3HY8A 1I0SA 1RZ1A 5JABA 3VYAA 2QEAA 3IN6A 4XHYA 4HX6A 3DMBA 2Q9KA 5CHEC 1DNLA 4HMTA 2R6VA 1W3OA 2ECRA 1TY9A 3A6QA 2E83A 2FHQA 3E4VA 3R5RA 3R5ZA 2NR4A 3U35A 3FKHA 2I02A 1W3RA 2D38A 3EC6A 2HTDA 2RE7A 1WLKA 1W9AA 2X1KA 3AMFA 1G78A 3A20A 4XJ2A 1I0RA 4QVBA 3U0IA 2PTFA 3BNKA 2FURA 3KYFA 3R5PA 3PFTA 3BA3A 3R5LA 3RH7A 1EJEA 2IMLA 3U34A 1XXOA 2ED4A 3R5WA 2D37A 3AWHA 2GJGA 2D36A 1NRGA 1WLIA 3R5YA 3K88A 1RFEA 1FLMA 3CB0A 4L82A 3TGVA 1WGBA 4HMSA 3SWJA 3A6RA 1AXJA 1CI0A 3K87A 1JNWA 2OL5A 3ZODA 5BNCA 2HTIA 2QCKA 3BPKA 1WV4A 3NFWA 1W3PA 1RZ0A 2FG9A 4YWNA 3ZOGA 5ESCA 2OU5A 4HMVA 1YOAA 1T9MA 1W3QA 4IRAA 3DNHA 3KYGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G77 A;  4HMW A;  4Y9I A;  2HHZ A;  5CHO A;  2I51 A;  2ECU A;  1XHN A;  1YLN A;  3CP3 A;  3DB0 A;  2IAB A;  3VY5 A;  3F7E A;  4Z85 A;  2X1J A;  2ARZ A;  3HMZ A;  1VL7 A;  3K86 A;  2IG6 A;  3U5W A;  3H96 A;  4HMX A;  2RDE A;  3ZOH A;  3VY2 A;  4F07 A;  4N7R C;  2HQ7 A;  3ZOE A;  3FGE A;  1G79 A;  1USF A;  2R0X A;  1G76 A;  2ASF A;  2HQ9 A;  1Y30 A;  2A2J A;  3GAS A;  4HMU A;  4R82 A;  3B5M A;  2D5M A;  4YBN A;  2VPA A;  4ZKY A;  1USC A;  2AQ6 A;  3ZOC A;  3ZOF A;  3HY8 A;  1I0S A;  1RZ1 A;  5JAB A;  3VYA A;  2QEA A;  3IN6 A;  4XHY A;  4HX6 A;  3DMB A;  2Q9K A;  5CHE C;  1DNL A;  4HMT A;  2R6V A;  1W3O A;  2ECR A;  1TY9 A;  3A6Q A;  2E83 A;  2FHQ A;  3E4V A;  3R5R A;  3R5Z A;  2NR4 A;  3U35 A;  3FKH A;  2I02 A;  1W3R A;  2D38 A;  3EC6 A;  2HTD A;  2RE7 A;  1WLK A;  1W9A A;  2X1K A;  3AMF A;  1G78 A;  3A20 A;  4XJ2 A;  1I0R A;  4QVB A;  3U0I A;  2PTF A;  3BNK A;  2FUR A;  3KYF A;  3R5P A;  3PFT A;  3BA3 A;  3R5L A;  3RH7 A;  1EJE A;  2IML A;  3U34 A;  1XXO A;  2ED4 A;  3R5W A;  2D37 A;  3AWH A;  2GJG A;  2D36 A;  1NRG A;  1WLI A;  3R5Y A;  3K88 A;  1RFE A;  1FLM A;  3CB0 A;  4L82 A;  3TGV A;  1WGB A;  4HMS A;  3SWJ A;  3A6R A;  1AXJ A;  1CI0 A;  3K87 A;  1JNW A;  2OL5 A;  3ZOD A;  5BNC A;  2HTI A;  2QCK A;  3BPK A;  1WV4 A;  3NFW A;  1W3P A;  1RZ0 A;  2FG9 A;  4YWN A;  3ZOG A;  5ESC A;  2OU5 A;  4HMV A;  1YOA A;  1T9M A;  1W3Q A;  4IRA A;  3DNH A;  3KYG A; 
#chains in the Genus database with same CATH topology
 1G77 A;  4HMW A;  4W64 A;  4Y9I A;  2L1T A;  3EAA A;  2HHZ A;  5CHO A;  2I51 A;  2ECU A;  1XHN A;  1YLN A;  3CP3 A;  3DB0 A;  2IAB A;  3VY5 A;  3F7E A;  4Z85 A;  2X1J A;  2ARZ A;  3HMZ A;  1VL7 A;  3K86 A;  2IG6 A;  3U5W A;  3H96 A;  4HMX A;  2RDE A;  3ZOH A;  3VY2 A;  4F07 A;  4N7R C;  2HQ7 A;  3ZOE A;  3FGE A;  1G79 A;  1USF A;  2R0X A;  1G76 A;  2P5Z X;  2ASF A;  2HQ9 A;  1Y30 A;  2A2J A;  3GAS A;  4HMU A;  4R82 A;  3B5M A;  2D5M A;  4YBN A;  2VPA A;  4ZKY A;  1USC A;  2AQ6 A;  3ZOC A;  3ZOF A;  3HY8 A;  1I0S A;  1RZ1 A;  5JAB A;  3VYA A;  2QEA A;  3IN6 A;  3HE1 A;  4XHY A;  4HX6 A;  3DMB A;  2Q9K A;  5CHE C;  1DNL A;  4HMT A;  4TV4 A;  2R6V A;  1W3O A;  2ECR A;  1TY9 A;  3A6Q A;  2E83 A;  2FHQ A;  3E4V A;  3R5R A;  3R5Z A;  2NR4 A;  3U35 A;  1Y12 A;  3FKH A;  2I02 A;  1W3R A;  2D38 A;  3EC6 A;  2HTD A;  2RE7 A;  1WLK A;  1W9A A;  2K4Q A;  2X1K A;  1G78 A;  3AMF A;  3A20 A;  4XJ2 A;  1I0R A;  4QVB A;  3U0I A;  2PTF A;  3BNK A;  2FUR A;  3KYF A;  3R5P A;  3PFT A;  3BA3 A;  3R5L A;  3RH7 A;  1EJE A;  2IML A;  3U34 A;  1XXO A;  2ED4 A;  3R5W A;  2D37 A;  3AWH A;  2GJG A;  2D36 A;  1NRG A;  1WLI A;  3R5Y A;  4MTK A;  3K88 A;  1RFE A;  1FLM A;  3CB0 A;  4L82 A;  3TGV A;  1WGB A;  4HMS A;  3SWJ A;  3A6R A;  1AXJ A;  1CI0 A;  3K87 A;  3V4H A;  1JNW A;  2OL5 A;  3ZOD A;  5BNC A;  2GUJ A;  2HTI A;  2QCK A;  4UHV A;  3BPK A;  1WV4 A;  3NFW A;  1W3P A;  1RZ0 A;  2FG9 A;  4YWN A;  3ZOG A;  5ESC A;  4HKH A;  2OU5 A;  4HMV A;  1YOA A;  1T9M A;  1W3Q A;  4IRA A;  3DNH A;  3KYG A; 
#chains in the Genus database with same CATH homology
 1G77 A;  4HMW A;  4Y9I A;  2HHZ A;  5CHO A;  2I51 A;  2ECU A;  1XHN A;  1YLN A;  3CP3 A;  3DB0 A;  2IAB A;  3VY5 A;  3F7E A;  4Z85 A;  2X1J A;  2ARZ A;  3HMZ A;  1VL7 A;  3K86 A;  2IG6 A;  3U5W A;  3H96 A;  4HMX A;  2RDE A;  3ZOH A;  3VY2 A;  4F07 A;  4N7R C;  2HQ7 A;  3ZOE A;  3FGE A;  1G79 A;  1USF A;  2R0X A;  1G76 A;  2ASF A;  2HQ9 A;  1Y30 A;  2A2J A;  3GAS A;  4HMU A;  4R82 A;  3B5M A;  2D5M A;  4YBN A;  2VPA A;  4ZKY A;  1USC A;  2AQ6 A;  3ZOC A;  3ZOF A;  3HY8 A;  1I0S A;  1RZ1 A;  5JAB A;  3VYA A;  2QEA A;  3IN6 A;  4XHY A;  4HX6 A;  3DMB A;  2Q9K A;  5CHE C;  1DNL A;  4HMT A;  2R6V A;  1W3O A;  2ECR A;  1TY9 A;  3A6Q A;  2E83 A;  2FHQ A;  3E4V A;  3R5R A;  3R5Z A;  2NR4 A;  3U35 A;  3FKH A;  2I02 A;  1W3R A;  2D38 A;  3EC6 A;  2HTD A;  2RE7 A;  1WLK A;  1W9A A;  2X1K A;  3AMF A;  1G78 A;  3A20 A;  4XJ2 A;  1I0R A;  4QVB A;  3U0I A;  2PTF A;  3BNK A;  2FUR A;  3KYF A;  3R5P A;  3PFT A;  3BA3 A;  3R5L A;  3RH7 A;  1EJE A;  2IML A;  3U34 A;  1XXO A;  2ED4 A;  3R5W A;  2D37 A;  3AWH A;  2GJG A;  2D36 A;  1NRG A;  1WLI A;  3R5Y A;  3K88 A;  1RFE A;  1FLM A;  3CB0 A;  4L82 A;  3TGV A;  1WGB A;  4HMS A;  3SWJ A;  3A6R A;  1AXJ A;  1CI0 A;  3K87 A;  1JNW A;  2OL5 A;  3ZOD A;  5BNC A;  2HTI A;  2QCK A;  3BPK A;  1WV4 A;  3NFW A;  1W3P A;  1RZ0 A;  2FG9 A;  4YWN A;  3ZOG A;  5ESC A;  2OU5 A;  4HMV A;  1YOA A;  1T9M A;  1W3Q A;  4IRA A;  3DNH A;  3KYG A; 
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