The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
72
|
sequence length |
252
|
structure length |
252
|
Chain Sequence |
VPPPLTPVADVVRPSAAEEARTIAASTNVGTLATLTTEGDPWASFVTYGLLGGAPVLCVSDMAEHGRNLAHDPRASIAIVAPSAESDPLASARVTLAGVAERPEGDELAAARAAHLDAVAAAKYYIDYSDFSVWVLRVQRVRWVGGYGRMDSTTGEAYAAAEADPVTPRAAGAIAHLNADHADSLLAMARNLGGYPDTGEAVCTGADRYGLDLRVTTERGVAYTRVGYAAPISSFDQLRAATVELAQRAKQS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb |
| molecule tags |
Heme binding protein
|
| source organism |
Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
|
| molecule keywords |
heme binding protein MSMEG_6519
|
| total genus |
72
|
| structure length |
252
|
| sequence length |
252
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2015-05-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10615 | DUF2470 | Protein of unknown function (DUF2470) |
| A | PF13883 | Pyrid_oxidase_2 | Pyridoxamine 5'-phosphate oxidase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Pnp Oxidase; Chain A | Electron Transport, Fmn-binding Protein; Chain A | ||
| Alpha Beta | Alpha-Beta Barrel | Split barrel-like | PNP-oxidase-like |
#chains in the Genus database with same CATH superfamily 3R5L A; 4ZKY A; 5CHE C; 2AQ6 A; 2RDE A; 2VPA A; 3ZOF A; 1WGB A; 4IRA A; 3K86 A; 1W3R A; 1G77 A; 2Q9K A; 3BA3 A; 3B5M A; 2IG6 A; 2HQ7 A; 3NFW A; 2PTF A; 2D36 A; 3DB0 A; 1AXJ A; 3R5Y A; 2HTI A; 1XHN A; 2HTD A; 4YWN A; 3U34 A; 1TY9 A; 3ZOE A; 4XJ2 A; 2QCK A; 2I02 A; 2R6V A; 1RZ0 A; 1RFE A; 3U5W A; 2IML A; 3ZOG A; 1VL7 A; 3K87 A; 1G79 A; 4HMT A; 3R5Z A; 3EC6 A; 5BNC A; 3A6Q A; 2QEA A; 3DNH A; 1DNL A; 2RE7 A; 1EJE A; 1W9A A; 2NR4 A; 2IAB A; 5CHO A; 3VYA A; 2GJG A; 2R0X A; 3R5R A; 3CB0 A; 2X1J A; 3U35 A; 4HMX A; 3CP3 A; 4HMU A; 2OU5 A; 1CI0 A; 3AWH A; 1G78 A; 3A6R A; 4XHY A; 4HMV A; 2ECU A; 1G76 A; 4HMS A; 1YLN A; 3E4V A; 3TGV A; 3PFT A; 1JNW A; 3FGE A; 3ZOH A; 3KYF A; 4HMW A; 5JAB A; 2X1K A; 3HY8 A; 2D5M A; 2HHZ A; 1W3Q A; 3ZOD A; 2E83 A; 1RZ1 A; 1I0S A; 2A2J A; 3K88 A; 3R5W A; 2FG9 A; 4HX6 A; 1NRG A; 1YOA A; 1WV4 A; 2I51 A; 3BNK A; 2ASF A; 2FHQ A; 2FUR A; 1Y30 A; 3VY2 A; 1W3O A; 3DMB A; 3H96 A; 1I0R A; 4L82 A; 3R5P A; 4F07 A; 4Y9I A; 3F7E A; 3AMF A; 1USC A; 2ECR A; 3A20 A; 3HMZ A; 5ESC A; 3ZOC A; 2OL5 A; 3RH7 A; 4N7R C; 2ARZ A; 1WLI A; 3GAS A; 4QVB A; 3IN6 A; 1XXO A; 1T9M A; 2D38 A; 4YBN A; 3FKH A; 2HQ9 A; 1WLK A; 3BPK A; 3VY5 A; 3KYG A; 3SWJ A; 4Z85 A; 2D37 A; 3U0I A; 4R82 A; 1USF A; 1W3P A; 1FLM A; 2ED4 A; #chains in the Genus database with same CATH topology 3R5L A; 4ZKY A; 5CHE C; 2AQ6 A; 2RDE A; 2VPA A; 3ZOF A; 1WGB A; 4IRA A; 3K86 A; 1W3R A; 1G77 A; 2Q9K A; 3BA3 A; 2P5Z X; 3B5M A; 2IG6 A; 2HQ7 A; 3NFW A; 2PTF A; 2D36 A; 3DB0 A; 1AXJ A; 3R5Y A; 2L1T A; 2HTI A; 1XHN A; 2HTD A; 3VKH A; 4YWN A; 3U34 A; 1TY9 A; 3ZOE A; 4XJ2 A; 2QCK A; 2I02 A; 2R6V A; 1RZ0 A; 1RFE A; 3U5W A; 2IML A; 3ZOG A; 1VL7 A; 3K87 A; 1G79 A; 4HMT A; 3R5Z A; 3EC6 A; 4AKI A; 5BNC A; 3A6Q A; 2QEA A; 3DNH A; 1DNL A; 2RE7 A; 1EJE A; 1W9A A; 1Y12 A; 2NR4 A; 2IAB A; 5CHO A; 3VKG A; 3VYA A; 2GJG A; 2R0X A; 3R5R A; 4AKG A; 3CB0 A; 2X1J A; 3U35 A; 4HMX A; 3CP3 A; 4HKH A; 4HMU A; 2OU5 A; 4W64 A; 3V4H A; 1CI0 A; 3EAA A; 3AWH A; 4TV4 A; 4MTK A; 1G78 A; 3A6R A; 4XHY A; 4HMV A; 2ECU A; 1G76 A; 4HMS A; 1YLN A; 3E4V A; 3TGV A; 3PFT A; 1JNW A; 3FGE A; 3ZOH A; 3KYF A; 4HMW A; 5JAB A; 2X1K A; 3HY8 A; 2D5M A; 2HHZ A; 1W3Q A; 3ZOD A; 2E83 A; 2GUJ A; 1RZ1 A; 1I0S A; 2A2J A; 3K88 A; 3R5W A; 2FG9 A; 4HX6 A; 1NRG A; 1YOA A; 1WV4 A; 2I51 A; 3BNK A; 2ASF A; 2FHQ A; 2FUR A; 1Y30 A; 3VY2 A; 1W3O A; 3DMB A; 3H96 A; 1I0R A; 4AI6 A; 4L82 A; 3R5P A; 4F07 A; 4Y9I A; 4UHV A; 3F7E A; 3AMF A; 1USC A; 2ECR A; 3A20 A; 3HMZ A; 5ESC A; 4AKH A; 3ZOC A; 2OL5 A; 3RH7 A; 4N7R C; 2ARZ A; 1WLI A; 3GAS A; 4QVB A; 3IN6 A; 3HE1 A; 1XXO A; 1T9M A; 2D38 A; 4YBN A; 3FKH A; 2HQ9 A; 1WLK A; 3BPK A; 3VY5 A; 3KYG A; 3SWJ A; 2K4Q A; 4Z85 A; 2D37 A; 3U0I A; 4R82 A; 1USF A; 1W3P A; 1FLM A; 2ED4 A; #chains in the Genus database with same CATH homology 3R5L A; 4ZKY A; 5CHE C; 2AQ6 A; 2RDE A; 2VPA A; 3ZOF A; 1WGB A; 4IRA A; 3K86 A; 1W3R A; 1G77 A; 2Q9K A; 3BA3 A; 3B5M A; 2IG6 A; 2HQ7 A; 3NFW A; 2PTF A; 2D36 A; 3DB0 A; 1AXJ A; 3R5Y A; 2HTI A; 1XHN A; 2HTD A; 4YWN A; 3U34 A; 1TY9 A; 3ZOE A; 4XJ2 A; 2QCK A; 2I02 A; 2R6V A; 1RZ0 A; 1RFE A; 3U5W A; 2IML A; 3ZOG A; 1VL7 A; 3K87 A; 1G79 A; 4HMT A; 3R5Z A; 3EC6 A; 5BNC A; 3A6Q A; 2QEA A; 3DNH A; 1DNL A; 2RE7 A; 1EJE A; 1W9A A; 2NR4 A; 2IAB A; 5CHO A; 3VYA A; 2GJG A; 2R0X A; 3R5R A; 3CB0 A; 2X1J A; 3U35 A; 4HMX A; 3CP3 A; 4HMU A; 2OU5 A; 1CI0 A; 3AWH A; 1G78 A; 3A6R A; 4XHY A; 4HMV A; 2ECU A; 1G76 A; 4HMS A; 1YLN A; 3E4V A; 3TGV A; 3PFT A; 1JNW A; 3FGE A; 3ZOH A; 3KYF A; 4HMW A; 5JAB A; 2X1K A; 3HY8 A; 2D5M A; 2HHZ A; 1W3Q A; 3ZOD A; 2E83 A; 1RZ1 A; 1I0S A; 2A2J A; 3K88 A; 3R5W A; 2FG9 A; 4HX6 A; 1NRG A; 1YOA A; 1WV4 A; 2I51 A; 3BNK A; 2ASF A; 2FHQ A; 2FUR A; 1Y30 A; 3VY2 A; 1W3O A; 3DMB A; 3H96 A; 1I0R A; 4L82 A; 3R5P A; 4F07 A; 4Y9I A; 3F7E A; 3AMF A; 1USC A; 2ECR A; 3A20 A; 3HMZ A; 5ESC A; 3ZOC A; 2OL5 A; 3RH7 A; 4N7R C; 2ARZ A; 1WLI A; 3GAS A; 4QVB A; 3IN6 A; 1XXO A; 1T9M A; 2D38 A; 4YBN A; 3FKH A; 2HQ9 A; 1WLK A; 3BPK A; 3VY5 A; 3KYG A; 3SWJ A; 4Z85 A; 2D37 A; 3U0I A; 4R82 A; 1USF A; 1W3P A; 1FLM A; 2ED4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
