1JTIA

Loop-inserted structure of p1-p1' cleaved ovalbumin mutant r339t
Total Genus 102
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
385
structure length
381
Chain Sequence
GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKTFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGTEVVGSAEAGVDAAEEFRADHPFLFCIKHIATNAVLFFGRCVSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Loop-inserted and thermostabilized structure of P1-P1' cleaved ovalbumin mutant R339T.
pubmed doi rcsb
molecule keywords Ovalbumin
molecule tags Allergen
source organism Gallus gallus
total genus 102
structure length 381
sequence length 385
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1jtiA01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1jtiA02
3T1PA 2DUTA 1JRRA 5C98A 2WXWA 3NDFA 1LQ8A 2VDYA 3NE4A 1DVMA 2QUGA 1BR8I 1DZHL 1JTIA 3Q02A 5CDXA 3ZHAA 1OYHL 7APIA 8APIA 2HIJI 1SEKA 1LK6I 5EI0A 1C5GA 2B4XI 1SR5A 4ROBA 5INWA 1KCTA 3FGQA 2RIWA 1D5SA 2VDXA 3KCGI 1T1FA 2OL2A 4AJUA 1BY7A 4G8OA 2XN5A 4CAAA 4C41A 2ANTI 1E05I 1QMNA 9PAIA 1A7CA 4AFXA 1OVAB 9APIA 3VVJA 1M93B 4AU2A 2HI9A 3CWLA 4RSQA 4ZK0A 2XN3A 1DVNA 2WY0C 1DZGI 2ZV6A 1ATUA 2WXZA 3OZQA 2HIJL 3STOA 1JMOA 2B4XL 3DLWA 1OC0A 1XQGA 2WXXA 4AJTA 4EB1L 2VH4A 3F1SA 3B9FI 5CDZA 1JJOC 5BRRI 1JMJA 2H4RA 4EB1I 1OO8A 4PYWA 4Y40A 3Q03A 2PEFA 1PSIA 3PB1I 1UHGA 3DRMA 2WXYC 2RIVA 4C49A 4DY7C 1B3KA 4AU3B 3EVJI 1E03I 1NQ9I 4G8RA 3CWMA 1DZGL 2PEEA 2D26A 3H5CA 4Y3KA 3UT3A 5HGCA 1QLPA 2WXZC 3EOXA 3R4LA 1YXAA 3PZFA 4IC0A 1SNGA 1JVQI 2GD4C 1R1LI 2XN7A 1XQJA 2ZNHA 3F5NA 1OPHA 1E04I 1C8OA 2H4QA 2H4PA 2ARQA 3DRUA 4AU4A 1OVAA 1EZXA 1LJ5A 4ZK3A 1HP7A 3LE2A 4BB2A 2XN6A 4X30A 1F0CA 4ROAA 2BEHL 4DTEA 4DY0A 4RO9A 2BEHI 4GA7A 1DZHI 3CAAA 3F02A 1ATHA 1ATTA 1QMBA 1OYHI 1WZ9A 2ACHA 2WY1A 2CEOA 1AS4A 3DY0A 1XU8A 3LW2A 4YIAA 2OAYA 3NDDA 1MTPA 4IF8A 4R9IA 1DB2A 1HLEA 1IMVA 4P0OA 5CE0A 2B5TI 4KDSA 4AU3A 2R9YA 3NDAA 1K9OI 2ARRA 1TB6I 4P0FA 1IZ2A 2V95A 4AQHA 5IO1A 1AZXI 3CVMA 1OVAC 1ANTI
chains in the Genus database with same CATH superfamily
3T1PA 2DUTA 1JRRA 5C98A 2WXWA 3NDFA 1LQ8A 2VDYA 3NE4A 1DVMA 2QUGA 1BR8I 1DZHL 1JTIA 3Q02A 5CDXA 3ZHAA 1OYHL 7APIA 8APIA 2HIJI 1SEKA 1LK6I 5EI0A 1C5GA 2B4XI 1SR5A 4ROBA 5INWA 1KCTA 3FGQA 2RIWA 1D5SA 2VDXA 3KCGI 1T1FA 2OL2A 4AJUA 1BY7A 4G8OA 2XN5A 4CAAA 4C41A 2ANTI 1E05I 1QMNA 9PAIA 1A7CA 4AFXA 1OVAB 9APIA 3VVJA 1M93B 4AU2A 2HI9A 3CWLA 4RSQA 4ZK0A 2XN3A 1DVNA 2WY0C 1DZGI 2ZV6A 1ATUA 2WXZA 3OZQA 2HIJL 3STOA 1JMOA 2B4XL 3DLWA 1OC0A 1XQGA 2WXXA 4AJTA 4EB1L 2VH4A 3F1SA 3B9FI 5CDZA 1JJOC 5BRRI 1JMJA 2H4RA 4EB1I 1OO8A 4PYWA 4Y40A 3Q03A 2PEFA 1PSIA 3PB1I 1UHGA 3DRMA 2WXYC 2RIVA 4C49A 4DY7C 1B3KA 4AU3B 3EVJI 1E03I 1NQ9I 4G8RA 3CWMA 1DZGL 2PEEA 2D26A 3H5CA 4Y3KA 3UT3A 5HGCA 1QLPA 2WXZC 3EOXA 3R4LA 1YXAA 3PZFA 4IC0A 1SNGA 1JVQI 2GD4C 1R1LI 2XN7A 1XQJA 2ZNHA 3F5NA 1OPHA 1E04I 1C8OA 2H4QA 2H4PA 2ARQA 3DRUA 4AU4A 1OVAA 1EZXA 1LJ5A 4ZK3A 1HP7A 3LE2A 4BB2A 2XN6A 4X30A 1F0CA 4ROAA 2BEHL 4DTEA 4DY0A 4RO9A 2BEHI 4GA7A 1DZHI 3CAAA 3F02A 1ATHA 1ATTA 1QMBA 1OYHI 1WZ9A 2ACHA 2WY1A 2CEOA 1AS4A 3DY0A 1XU8A 3LW2A 4YIAA 2OAYA 3NDDA 1MTPA 4IF8A 4R9IA 1DB2A 1HLEA 1IMVA 4P0OA 5CE0A 2B5TI 4KDSA 4AU3A 2R9YA 3NDAA 1K9OI 2ARRA 1TB6I 4P0FA 1IZ2A 2V95A 4AQHA 5IO1A 1AZXI 3CVMA 1OVAC 1ANTI
chains in the Genus database with same CATH topology
3T1PA 2DUTA 1JRRA 5C98A 2WXWA 3NDFA 1LQ8A 2VDYA 3NE4A 1DVMA 2QUGA 1BR8I 1DZHL 1JTIA 3Q02A 5CDXA 3ZHAA 1OYHL 7APIA 8APIA 2HIJI 1SEKA 1LK6I 5EI0A 1C5GA 2B4XI 1SR5A 4ROBA 5INWA 1KCTA 3FGQA 2RIWA 1D5SA 2VDXA 3KCGI 1T1FA 2OL2A 4AJUA 1BY7A 4G8OA 2XN5A 4CAAA 4C41A 2ANTI 1E05I 1QMNA 9PAIA 1A7CA 4AFXA 1OVAB 9APIA 3VVJA 1M93B 4AU2A 2HI9A 3CWLA 4RSQA 4ZK0A 2XN3A 1DVNA 2WY0C 1DZGI 2ZV6A 1ATUA 2WXZA 3OZQA 2HIJL 3STOA 1JMOA 2B4XL 3DLWA 1OC0A 1XQGA 2WXXA 4AJTA 4EB1L 2VH4A 3F1SA 3B9FI 5CDZA 1JJOC 5BRRI 1JMJA 2H4RA 4EB1I 1OO8A 4PYWA 4Y40A 3Q03A 2PEFA 1PSIA 3PB1I 1UHGA 3DRMA 2WXYC 2RIVA 4C49A 4DY7C 1B3KA 4AU3B 3EVJI 1E03I 1NQ9I 4G8RA 3CWMA 1DZGL 2PEEA 2D26A 3H5CA 4Y3KA 3UT3A 5HGCA 1QLPA 2WXZC 3EOXA 3R4LA 1YXAA 3PZFA 4IC0A 1SNGA 1JVQI 2GD4C 1R1LI 2XN7A 1XQJA 2ZNHA 3F5NA 1OPHA 1E04I 1C8OA 2H4QA 2H4PA 2ARQA 3DRUA 4AU4A 1OVAA 1EZXA 1LJ5A 4ZK3A 1HP7A 3LE2A 4BB2A 2XN6A 4X30A 1F0CA 4ROAA 2BEHL 4DTEA 4DY0A 4RO9A 2BEHI 4GA7A 1DZHI 3CAAA 3F02A 1ATHA 1ATTA 1QMBA 1OYHI 1WZ9A 2ACHA 2WY1A 2CEOA 1AS4A 3DY0A 1XU8A 3LW2A 4YIAA 2OAYA 3NDDA 1MTPA 4IF8A 4R9IA 1DB2A 1HLEA 1IMVA 4P0OA 5CE0A 2B5TI 4KDSA 4AU3A 2R9YA 3NDAA 1K9OI 2ARRA 1TB6I 4P0FA 1IZ2A 2V95A 4AQHA 5IO1A 1AZXI 3CVMA 1OVAC 1ANTI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T1P A;  2DUT A;  1JRR A;  5C98 A;  2WXW A;  3NDF A;  1LQ8 A;  2VDY A;  3NE4 A;  1DVM A;  2QUG A;  1BR8 I;  1DZH L;  1JTI A;  3Q02 A;  5CDX A;  3ZHA A;  1OYH L;  7API A;  8API A;  2HIJ I;  1SEK A;  1LK6 I;  5EI0 A;  1C5G A;  2B4X I;  1SR5 A;  4ROB A;  5INW A;  1KCT A;  3FGQ A;  2RIW A;  1D5S A;  2VDX A;  3KCG I;  1T1F A;  2OL2 A;  4AJU A;  1BY7 A;  4G8O A;  2XN5 A;  4CAA A;  4C41 A;  2ANT I;  1E05 I;  1QMN A;  9PAI A;  1A7C A;  4AFX A;  1OVA B;  9API A;  3VVJ A;  1M93 B;  4AU2 A;  2HI9 A;  3CWL A;  4RSQ A;  4ZK0 A;  2XN3 A;  1DVN A;  2WY0 C;  1DZG I;  2ZV6 A;  1ATU A;  2WXZ A;  3OZQ A;  2HIJ L;  3STO A;  1JMO A;  2B4X L;  3DLW A;  1OC0 A;  1XQG A;  2WXX A;  4AJT A;  4EB1 L;  2VH4 A;  3F1S A;  3B9F I;  5CDZ A;  1JJO C;  5BRR I;  1JMJ A;  2H4R A;  4EB1 I;  1OO8 A;  4PYW A;  4Y40 A;  3Q03 A;  2PEF A;  1PSI A;  3PB1 I;  1UHG A;  3DRM A;  2WXY C;  2RIV A;  4C49 A;  4DY7 C;  1B3K A;  4AU3 B;  3EVJ I;  1E03 I;  1NQ9 I;  4G8R A;  3CWM A;  1DZG L;  2PEE A;  2D26 A;  3H5C A;  4Y3K A;  3UT3 A;  5HGC A;  1QLP A;  2WXZ C;  3EOX A;  3R4L A;  1YXA A;  3PZF A;  4IC0 A;  1SNG A;  1JVQ I;  2GD4 C;  1R1L I;  2XN7 A;  1XQJ A;  2ZNH A;  3F5N A;  1OPH A;  1E04 I;  1C8O A;  2H4Q A;  2H4P A;  2ARQ A;  3DRU A;  4AU4 A;  1OVA A;  1EZX A;  1LJ5 A;  4ZK3 A;  1HP7 A;  3LE2 A;  4BB2 A;  2XN6 A;  4X30 A;  1F0C A;  4ROA A;  2BEH L;  4DTE A;  4DY0 A;  4RO9 A;  2BEH I;  4GA7 A;  1DZH I;  3CAA A;  3F02 A;  1ATH A;  1ATT A;  1QMB A;  1OYH I;  1WZ9 A;  2ACH A;  2WY1 A;  2CEO A;  1AS4 A;  3DY0 A;  1XU8 A;  3LW2 A;  4YIA A;  2OAY A;  3NDD A;  1MTP A;  4IF8 A;  4R9I A;  1DB2 A;  1HLE A;  1IMV A;  4P0O A;  5CE0 A;  2B5T I;  4KDS A;  4AU3 A;  2R9Y A;  3NDA A;  1K9O I;  2ARR A;  1TB6 I;  4P0F A;  1IZ2 A;  2V95 A;  4AQH A;  5IO1 A;  1AZX I;  3CVM A;  1OVA C;  1ANT I; 
#chains in the Genus database with same CATH topology
 3T1P A;  2DUT A;  1JRR A;  5C98 A;  2WXW A;  3NDF A;  1LQ8 A;  2VDY A;  3NE4 A;  1DVM A;  2QUG A;  1BR8 I;  1DZH L;  1JTI A;  3Q02 A;  5CDX A;  3ZHA A;  1OYH L;  7API A;  8API A;  2HIJ I;  1SEK A;  1LK6 I;  5EI0 A;  1C5G A;  2B4X I;  1SR5 A;  4ROB A;  5INW A;  1KCT A;  3FGQ A;  2RIW A;  1D5S A;  2VDX A;  3KCG I;  1T1F A;  2OL2 A;  4AJU A;  1BY7 A;  4G8O A;  2XN5 A;  4CAA A;  4C41 A;  2ANT I;  1E05 I;  1QMN A;  9PAI A;  1A7C A;  4AFX A;  1OVA B;  9API A;  3VVJ A;  1M93 B;  4AU2 A;  2HI9 A;  3CWL A;  4RSQ A;  4ZK0 A;  2XN3 A;  1DVN A;  2WY0 C;  1DZG I;  2ZV6 A;  1ATU A;  2WXZ A;  3OZQ A;  2HIJ L;  3STO A;  1JMO A;  2B4X L;  3DLW A;  1OC0 A;  1XQG A;  2WXX A;  4AJT A;  4EB1 L;  2VH4 A;  3F1S A;  3B9F I;  5CDZ A;  1JJO C;  5BRR I;  1JMJ A;  2H4R A;  4EB1 I;  1OO8 A;  4PYW A;  4Y40 A;  3Q03 A;  2PEF A;  1PSI A;  3PB1 I;  1UHG A;  3DRM A;  2WXY C;  2RIV A;  4C49 A;  4DY7 C;  1B3K A;  4AU3 B;  3EVJ I;  1E03 I;  1NQ9 I;  4G8R A;  3CWM A;  1DZG L;  2PEE A;  2D26 A;  3H5C A;  4Y3K A;  3UT3 A;  5HGC A;  1QLP A;  2WXZ C;  3EOX A;  3R4L A;  1YXA A;  3PZF A;  4IC0 A;  1SNG A;  1JVQ I;  2GD4 C;  1R1L I;  2XN7 A;  1XQJ A;  2ZNH A;  3F5N A;  1OPH A;  1E04 I;  1C8O A;  2H4Q A;  2H4P A;  2ARQ A;  3DRU A;  4AU4 A;  1OVA A;  1EZX A;  1LJ5 A;  4ZK3 A;  1HP7 A;  3LE2 A;  4BB2 A;  2XN6 A;  4X30 A;  1F0C A;  4ROA A;  2BEH L;  4DTE A;  4DY0 A;  4RO9 A;  2BEH I;  4GA7 A;  1DZH I;  3CAA A;  3F02 A;  1ATH A;  1ATT A;  1QMB A;  1OYH I;  1WZ9 A;  2ACH A;  2WY1 A;  2CEO A;  1AS4 A;  3DY0 A;  1XU8 A;  3LW2 A;  4YIA A;  2OAY A;  3NDD A;  1MTP A;  4IF8 A;  4R9I A;  1DB2 A;  1HLE A;  1IMV A;  4P0O A;  5CE0 A;  2B5T I;  4KDS A;  4AU3 A;  2R9Y A;  3NDA A;  1K9O I;  2ARR A;  1TB6 I;  4P0F A;  1IZ2 A;  2V95 A;  4AQH A;  5IO1 A;  1AZX I;  3CVM A;  1OVA C;  1ANT I; 
#chains in the Genus database with same CATH homology
 3T1P A;  2DUT A;  1JRR A;  5C98 A;  2WXW A;  3NDF A;  1LQ8 A;  2VDY A;  3NE4 A;  1DVM A;  2QUG A;  1BR8 I;  1DZH L;  1JTI A;  3Q02 A;  5CDX A;  3ZHA A;  1OYH L;  7API A;  8API A;  2HIJ I;  1SEK A;  1LK6 I;  5EI0 A;  1C5G A;  2B4X I;  1SR5 A;  4ROB A;  5INW A;  1KCT A;  3FGQ A;  2RIW A;  1D5S A;  2VDX A;  3KCG I;  1T1F A;  2OL2 A;  4AJU A;  1BY7 A;  4G8O A;  2XN5 A;  4CAA A;  4C41 A;  2ANT I;  1E05 I;  1QMN A;  9PAI A;  1A7C A;  4AFX A;  1OVA B;  9API A;  3VVJ A;  1M93 B;  4AU2 A;  2HI9 A;  3CWL A;  4RSQ A;  4ZK0 A;  2XN3 A;  1DVN A;  2WY0 C;  1DZG I;  2ZV6 A;  1ATU A;  2WXZ A;  3OZQ A;  2HIJ L;  3STO A;  1JMO A;  2B4X L;  3DLW A;  1OC0 A;  1XQG A;  2WXX A;  4AJT A;  4EB1 L;  2VH4 A;  3F1S A;  3B9F I;  5CDZ A;  1JJO C;  5BRR I;  1JMJ A;  2H4R A;  4EB1 I;  1OO8 A;  4PYW A;  4Y40 A;  3Q03 A;  2PEF A;  1PSI A;  3PB1 I;  1UHG A;  3DRM A;  2WXY C;  2RIV A;  4C49 A;  4DY7 C;  1B3K A;  4AU3 B;  3EVJ I;  1E03 I;  1NQ9 I;  4G8R A;  3CWM A;  1DZG L;  2PEE A;  2D26 A;  3H5C A;  4Y3K A;  3UT3 A;  5HGC A;  1QLP A;  2WXZ C;  3EOX A;  3R4L A;  1YXA A;  3PZF A;  4IC0 A;  1SNG A;  1JVQ I;  2GD4 C;  1R1L I;  2XN7 A;  1XQJ A;  2ZNH A;  3F5N A;  1OPH A;  1E04 I;  1C8O A;  2H4Q A;  2H4P A;  2ARQ A;  3DRU A;  4AU4 A;  1OVA A;  1EZX A;  1LJ5 A;  4ZK3 A;  1HP7 A;  3LE2 A;  4BB2 A;  2XN6 A;  4X30 A;  1F0C A;  4ROA A;  2BEH L;  4DTE A;  4DY0 A;  4RO9 A;  2BEH I;  4GA7 A;  1DZH I;  3CAA A;  3F02 A;  1ATH A;  1ATT A;  1QMB A;  1OYH I;  1WZ9 A;  2ACH A;  2WY1 A;  2CEO A;  1AS4 A;  3DY0 A;  1XU8 A;  3LW2 A;  4YIA A;  2OAY A;  3NDD A;  1MTP A;  4IF8 A;  4R9I A;  1DB2 A;  1HLE A;  1IMV A;  4P0O A;  5CE0 A;  2B5T I;  4KDS A;  4AU3 A;  2R9Y A;  3NDA A;  1K9O I;  2ARR A;  1TB6 I;  4P0F A;  1IZ2 A;  2V95 A;  4AQH A;  5IO1 A;  1AZX I;  3CVM A;  1OVA C;  1ANT I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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