3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
molecule tags Hydrolase inhibitor
source organism Dromaius novaehollandiae
molecule keywords Ovalbumin
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
1JVQI 3LE2A 1T1FA 1LQ8A 2BEHL 1XQGA 1OYHI 1DVNA 4ROBA 4C49A 2H4QA 4Y40A 2R9YA 1XU8A 2WXZA 1DZGL 1LJ5A 1MTPA 1JJOC 3DRMA 2B4XI 3KCGI 4R9IA 3LW2A 2ZV6A 4PYWA 1B3KA 3DY0A 1OC0A 4GA7A 4BB2A 3T1PA 4AU2A 7APIA 2GD4C 2HIJL 1SEKA 1OPHA 2WXYC 2BEHI 4G8OA 2H4PA 4AJUA 5BRRI 1D5SA 1HLEA 2ANTI 4AU3A 9PAIA 1DZGI 3F5NA 3PB1I 2PEFA 2VDYA 4ZK0A 2HI9A 2HIJI 4C41A 9APIA 3H5CA 1JMJA 3ZHAA 1OVAC 2WXZC 4Y3KA 4AU3B 4DY0A 1ATUA 4CAAA 3F02A 4RO9A 2H4RA 5CE0A 2B5TI 4IC0A 1NQ9I 4DTEA 1C5GA 3CWMA 1DB2A 1DZHL 3OZQA 1YXAA 3STOA 2WY0C 1WZ9A 3VVJA 5CDXA 2XN3A 2VDXA 1KCTA 1DVMA 1JMOA 2WY1A 1R1LI 1E03I 1E05I 3CAAA 3NDDA 1PSIA 1HP7A 1ATHA 2ACHA 3NDAA 1QMNA 1IZ2A 4ZK3A 3DRUA 1TB6I 1LK6I 4RSQA 4KDSA 2VH4A 4P0FA 1IMVA 2OAYA 1JTIA 3CVMA 3DLWA 3UT3A 3EOXA 2XN7A 1DZHI 3Q02A 3FGQA 4AQHA 1BR8I 2XN5A 1M93B 2PEEA 3R4LA 5IO1A 3PZFA 4AFXA 1K9OI 2OL2A 4ROAA 4DY7C 3Q03A 4G8RA 1ATTA 2XN6A 4X30A 2WXWA 1XQJA 2DUTA 1A7CA 3NE4A 1E04I 1AZXI 1C8OA 1F0CA 2ARRA 3NDFA 2RIVA 4AU4A 2WXXA 4EB1L 2ZNHA 8APIA 1OVAA 1JRRA 5INWA 4YIAA 5EI0A 1QMBA 1OYHL 1EZXA 2ARQA 3CWLA 5C98A 1SNGA 2RIWA 1BY7A 3B9FI 1OO8A 5HGCA 1OVAB 4P0OA 2B4XL 1UHGA 3F1SA 4AJTA 1SR5A 2QUGA 1ANTI 3EVJI 4IF8A 2CEOA 2V95A 2D26A 4EB1I 5CDZA 1AS4A 1QLPA
chains in the Genus database with same CATH superfamily
1JVQI 3LE2A 1T1FA 1LQ8A 2BEHL 1XQGA 1OYHI 1DVNA 4ROBA 4C49A 2H4QA 4Y40A 2R9YA 1XU8A 2WXZA 1DZGL 1LJ5A 1MTPA 1JJOC 3DRMA 2B4XI 3KCGI 4R9IA 3LW2A 2ZV6A 4PYWA 1B3KA 3DY0A 1OC0A 4GA7A 4BB2A 3T1PA 4AU2A 7APIA 2GD4C 2HIJL 1SEKA 1OPHA 2WXYC 2BEHI 4G8OA 2H4PA 4AJUA 5BRRI 1D5SA 1HLEA 2ANTI 4AU3A 9PAIA 1DZGI 3F5NA 3PB1I 2PEFA 2VDYA 4ZK0A 2HI9A 2HIJI 4C41A 9APIA 3H5CA 1JMJA 3ZHAA 1OVAC 2WXZC 4Y3KA 4AU3B 4DY0A 1ATUA 4CAAA 3F02A 4RO9A 2H4RA 5CE0A 2B5TI 4IC0A 1NQ9I 4DTEA 1C5GA 3CWMA 1DB2A 1DZHL 3OZQA 1YXAA 3STOA 2WY0C 1WZ9A 3VVJA 5CDXA 2XN3A 2VDXA 1KCTA 1DVMA 1JMOA 2WY1A 1R1LI 1E03I 1E05I 3CAAA 3NDDA 1PSIA 1HP7A 1ATHA 2ACHA 3NDAA 1QMNA 1IZ2A 4ZK3A 3DRUA 1TB6I 1LK6I 4RSQA 4KDSA 2VH4A 4P0FA 1IMVA 2OAYA 1JTIA 3CVMA 3DLWA 3UT3A 3EOXA 2XN7A 1DZHI 3Q02A 3FGQA 4AQHA 1BR8I 2XN5A 1M93B 2PEEA 3R4LA 5IO1A 3PZFA 4AFXA 1K9OI 2OL2A 4ROAA 4DY7C 3Q03A 4G8RA 1ATTA 2XN6A 4X30A 2WXWA 1XQJA 2DUTA 1A7CA 3NE4A 1E04I 1AZXI 1C8OA 1F0CA 2ARRA 3NDFA 2RIVA 4AU4A 2WXXA 4EB1L 2ZNHA 8APIA 1OVAA 1JRRA 5INWA 4YIAA 5EI0A 1QMBA 1OYHL 1EZXA 2ARQA 3CWLA 5C98A 1SNGA 2RIWA 1BY7A 3B9FI 1OO8A 5HGCA 1OVAB 4P0OA 2B4XL 1UHGA 3F1SA 4AJTA 1SR5A 2QUGA 1ANTI 3EVJI 4IF8A 2CEOA 2V95A 2D26A 4EB1I 5CDZA 1AS4A 1QLPA
chains in the Genus database with same CATH topology
1JVQI 3LE2A 1T1FA 1LQ8A 2BEHL 1XQGA 1OYHI 1DVNA 4ROBA 4C49A 2H4QA 4Y40A 2R9YA 1XU8A 2WXZA 1DZGL 1LJ5A 1MTPA 1JJOC 3DRMA 2B4XI 3KCGI 4R9IA 3LW2A 2ZV6A 4PYWA 1B3KA 3DY0A 1OC0A 4GA7A 4BB2A 3T1PA 4AU2A 7APIA 2GD4C 2HIJL 1SEKA 1OPHA 2WXYC 2BEHI 4G8OA 2H4PA 4AJUA 5BRRI 1D5SA 1HLEA 2ANTI 4AU3A 9PAIA 1DZGI 3F5NA 3PB1I 2PEFA 2VDYA 4ZK0A 2HI9A 2HIJI 4C41A 9APIA 3H5CA 1JMJA 3ZHAA 1OVAC 2WXZC 4Y3KA 4AU3B 4DY0A 1ATUA 4CAAA 3F02A 4RO9A 2H4RA 5CE0A 2B5TI 4IC0A 1NQ9I 4DTEA 1C5GA 3CWMA 1DB2A 1DZHL 3OZQA 1YXAA 3STOA 2WY0C 1WZ9A 3VVJA 5CDXA 2XN3A 2VDXA 1KCTA 1DVMA 1JMOA 2WY1A 1R1LI 1E03I 1E05I 3CAAA 3NDDA 1PSIA 1HP7A 1ATHA 2ACHA 3NDAA 1QMNA 1IZ2A 4ZK3A 3DRUA 1TB6I 1LK6I 4RSQA 4KDSA 2VH4A 4P0FA 1IMVA 2OAYA 1JTIA 3CVMA 3DLWA 3UT3A 3EOXA 2XN7A 1DZHI 3Q02A 3FGQA 4AQHA 1BR8I 2XN5A 1M93B 2PEEA 3R4LA 5IO1A 3PZFA 4AFXA 1K9OI 2OL2A 4ROAA 4DY7C 3Q03A 4G8RA 1ATTA 2XN6A 4X30A 2WXWA 1XQJA 2DUTA 1A7CA 3NE4A 1E04I 1AZXI 1C8OA 1F0CA 2ARRA 3NDFA 2RIVA 4AU4A 2WXXA 4EB1L 2ZNHA 8APIA 1OVAA 1JRRA 5INWA 4YIAA 5EI0A 1QMBA 1OYHL 1EZXA 2ARQA 3CWLA 5C98A 1SNGA 2RIWA 1BY7A 3B9FI 1OO8A 5HGCA 1OVAB 4P0OA 2B4XL 1UHGA 3F1SA 4AJTA 1SR5A 2QUGA 1ANTI 3EVJI 4IF8A 2CEOA 2V95A 2D26A 4EB1I 5CDZA 1AS4A 1QLPA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1JVQ I;  3LE2 A;  1T1F A;  1LQ8 A;  2BEH L;  1XQG A;  1OYH I;  1DVN A;  4ROB A;  4C49 A;  2H4Q A;  4Y40 A;  2R9Y A;  1XU8 A;  2WXZ A;  1DZG L;  1LJ5 A;  1MTP A;  1JJO C;  3DRM A;  2B4X I;  3KCG I;  4R9I A;  3LW2 A;  2ZV6 A;  4PYW A;  1B3K A;  3DY0 A;  1OC0 A;  4GA7 A;  4BB2 A;  3T1P A;  4AU2 A;  7API A;  2GD4 C;  2HIJ L;  1SEK A;  1OPH A;  2WXY C;  2BEH I;  4G8O A;  2H4P A;  4AJU A;  5BRR I;  1D5S A;  1HLE A;  2ANT I;  4AU3 A;  9PAI A;  1DZG I;  3F5N A;  3PB1 I;  2PEF A;  2VDY A;  4ZK0 A;  2HI9 A;  2HIJ I;  4C41 A;  9API A;  3H5C A;  1JMJ A;  3ZHA A;  1OVA C;  2WXZ C;  4Y3K A;  4AU3 B;  4DY0 A;  1ATU A;  4CAA A;  3F02 A;  4RO9 A;  2H4R A;  5CE0 A;  2B5T I;  4IC0 A;  1NQ9 I;  4DTE A;  1C5G A;  3CWM A;  1DB2 A;  1DZH L;  3OZQ A;  1YXA A;  3STO A;  2WY0 C;  1WZ9 A;  3VVJ A;  5CDX A;  2XN3 A;  2VDX A;  1KCT A;  1DVM A;  1JMO A;  2WY1 A;  1R1L I;  1E03 I;  1E05 I;  3CAA A;  3NDD A;  1PSI A;  1HP7 A;  1ATH A;  2ACH A;  3NDA A;  1QMN A;  1IZ2 A;  4ZK3 A;  3DRU A;  1TB6 I;  1LK6 I;  4RSQ A;  4KDS A;  2VH4 A;  4P0F A;  1IMV A;  2OAY A;  1JTI A;  3CVM A;  3DLW A;  3UT3 A;  3EOX A;  2XN7 A;  1DZH I;  3Q02 A;  3FGQ A;  4AQH A;  1BR8 I;  2XN5 A;  1M93 B;  2PEE A;  3R4L A;  5IO1 A;  3PZF A;  4AFX A;  1K9O I;  2OL2 A;  4ROA A;  4DY7 C;  3Q03 A;  4G8R A;  1ATT A;  2XN6 A;  4X30 A;  2WXW A;  1XQJ A;  2DUT A;  1A7C A;  3NE4 A;  1E04 I;  1AZX I;  1C8O A;  1F0C A;  2ARR A;  3NDF A;  2RIV A;  4AU4 A;  2WXX A;  4EB1 L;  2ZNH A;  8API A;  1OVA A;  1JRR A;  5INW A;  4YIA A;  5EI0 A;  1QMB A;  1OYH L;  1EZX A;  2ARQ A;  3CWL A;  5C98 A;  1SNG A;  2RIW A;  1BY7 A;  3B9F I;  1OO8 A;  5HGC A;  1OVA B;  4P0O A;  2B4X L;  1UHG A;  3F1S A;  4AJT A;  1SR5 A;  2QUG A;  1ANT I;  3EVJ I;  4IF8 A;  2CEO A;  2V95 A;  2D26 A;  4EB1 I;  5CDZ A;  1AS4 A;  1QLP A; 
#chains in the Genus database with same CATH topology
 1JVQ I;  3LE2 A;  1T1F A;  1LQ8 A;  2BEH L;  1XQG A;  1OYH I;  1DVN A;  4ROB A;  4C49 A;  2H4Q A;  4Y40 A;  2R9Y A;  1XU8 A;  2WXZ A;  1DZG L;  1LJ5 A;  1MTP A;  1JJO C;  3DRM A;  2B4X I;  3KCG I;  4R9I A;  3LW2 A;  2ZV6 A;  4PYW A;  1B3K A;  3DY0 A;  1OC0 A;  4GA7 A;  4BB2 A;  3T1P A;  4AU2 A;  7API A;  2GD4 C;  2HIJ L;  1SEK A;  1OPH A;  2WXY C;  2BEH I;  4G8O A;  2H4P A;  4AJU A;  5BRR I;  1D5S A;  1HLE A;  2ANT I;  4AU3 A;  9PAI A;  1DZG I;  3F5N A;  3PB1 I;  2PEF A;  2VDY A;  4ZK0 A;  2HI9 A;  2HIJ I;  4C41 A;  9API A;  3H5C A;  1JMJ A;  3ZHA A;  1OVA C;  2WXZ C;  4Y3K A;  4AU3 B;  4DY0 A;  1ATU A;  4CAA A;  3F02 A;  4RO9 A;  2H4R A;  5CE0 A;  2B5T I;  4IC0 A;  1NQ9 I;  4DTE A;  1C5G A;  3CWM A;  1DB2 A;  1DZH L;  3OZQ A;  1YXA A;  3STO A;  2WY0 C;  1WZ9 A;  3VVJ A;  5CDX A;  2XN3 A;  2VDX A;  1KCT A;  1DVM A;  1JMO A;  2WY1 A;  1R1L I;  1E03 I;  1E05 I;  3CAA A;  3NDD A;  1PSI A;  1HP7 A;  1ATH A;  2ACH A;  3NDA A;  1QMN A;  1IZ2 A;  4ZK3 A;  3DRU A;  1TB6 I;  1LK6 I;  4RSQ A;  4KDS A;  2VH4 A;  4P0F A;  1IMV A;  2OAY A;  1JTI A;  3CVM A;  3DLW A;  3UT3 A;  3EOX A;  2XN7 A;  1DZH I;  3Q02 A;  3FGQ A;  4AQH A;  1BR8 I;  2XN5 A;  1M93 B;  2PEE A;  3R4L A;  5IO1 A;  3PZF A;  4AFX A;  1K9O I;  2OL2 A;  4ROA A;  4DY7 C;  3Q03 A;  4G8R A;  1ATT A;  2XN6 A;  4X30 A;  2WXW A;  1XQJ A;  2DUT A;  1A7C A;  3NE4 A;  1E04 I;  1AZX I;  1C8O A;  1F0C A;  2ARR A;  3NDF A;  2RIV A;  4AU4 A;  2WXX A;  4EB1 L;  2ZNH A;  8API A;  1OVA A;  1JRR A;  5INW A;  4YIA A;  5EI0 A;  1QMB A;  1OYH L;  1EZX A;  2ARQ A;  3CWL A;  5C98 A;  1SNG A;  2RIW A;  1BY7 A;  3B9F I;  1OO8 A;  5HGC A;  1OVA B;  4P0O A;  2B4X L;  1UHG A;  3F1S A;  4AJT A;  1SR5 A;  2QUG A;  1ANT I;  3EVJ I;  4IF8 A;  2CEO A;  2V95 A;  2D26 A;  4EB1 I;  5CDZ A;  1AS4 A;  1QLP A; 
#chains in the Genus database with same CATH homology
 1JVQ I;  3LE2 A;  1T1F A;  1LQ8 A;  2BEH L;  1XQG A;  1OYH I;  1DVN A;  4ROB A;  4C49 A;  2H4Q A;  4Y40 A;  2R9Y A;  1XU8 A;  2WXZ A;  1DZG L;  1LJ5 A;  1MTP A;  1JJO C;  3DRM A;  2B4X I;  3KCG I;  4R9I A;  3LW2 A;  2ZV6 A;  4PYW A;  1B3K A;  3DY0 A;  1OC0 A;  4GA7 A;  4BB2 A;  3T1P A;  4AU2 A;  7API A;  2GD4 C;  2HIJ L;  1SEK A;  1OPH A;  2WXY C;  2BEH I;  4G8O A;  2H4P A;  4AJU A;  5BRR I;  1D5S A;  1HLE A;  2ANT I;  4AU3 A;  9PAI A;  1DZG I;  3F5N A;  3PB1 I;  2PEF A;  2VDY A;  4ZK0 A;  2HI9 A;  2HIJ I;  4C41 A;  9API A;  3H5C A;  1JMJ A;  3ZHA A;  1OVA C;  2WXZ C;  4Y3K A;  4AU3 B;  4DY0 A;  1ATU A;  4CAA A;  3F02 A;  4RO9 A;  2H4R A;  5CE0 A;  2B5T I;  4IC0 A;  1NQ9 I;  4DTE A;  1C5G A;  3CWM A;  1DB2 A;  1DZH L;  3OZQ A;  1YXA A;  3STO A;  2WY0 C;  1WZ9 A;  3VVJ A;  5CDX A;  2XN3 A;  2VDX A;  1KCT A;  1DVM A;  1JMO A;  2WY1 A;  1R1L I;  1E03 I;  1E05 I;  3CAA A;  3NDD A;  1PSI A;  1HP7 A;  1ATH A;  2ACH A;  3NDA A;  1QMN A;  1IZ2 A;  4ZK3 A;  3DRU A;  1TB6 I;  1LK6 I;  4RSQ A;  4KDS A;  2VH4 A;  4P0F A;  1IMV A;  2OAY A;  1JTI A;  3CVM A;  3DLW A;  3UT3 A;  3EOX A;  2XN7 A;  1DZH I;  3Q02 A;  3FGQ A;  4AQH A;  1BR8 I;  2XN5 A;  1M93 B;  2PEE A;  3R4L A;  5IO1 A;  3PZF A;  4AFX A;  1K9O I;  2OL2 A;  4ROA A;  4DY7 C;  3Q03 A;  4G8R A;  1ATT A;  2XN6 A;  4X30 A;  2WXW A;  1XQJ A;  2DUT A;  1A7C A;  3NE4 A;  1E04 I;  1AZX I;  1C8O A;  1F0C A;  2ARR A;  3NDF A;  2RIV A;  4AU4 A;  2WXX A;  4EB1 L;  2ZNH A;  8API A;  1OVA A;  1JRR A;  5INW A;  4YIA A;  5EI0 A;  1QMB A;  1OYH L;  1EZX A;  2ARQ A;  3CWL A;  5C98 A;  1SNG A;  2RIW A;  1BY7 A;  3B9F I;  1OO8 A;  5HGC A;  1OVA B;  4P0O A;  2B4X L;  1UHG A;  3F1S A;  4AJT A;  1SR5 A;  2QUG A;  1ANT I;  3EVJ I;  4IF8 A;  2CEO A;  2V95 A;  2D26 A;  4EB1 I;  5CDZ A;  1AS4 A;  1QLP A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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