3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
molecule keywords Ovalbumin
molecule tags Hydrolase inhibitor
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
3B9FI 1JTIA 1ATTA 1IMVA 8APIA 3R4LA 4C49A 2HIJL 4P0FA 1OC0A 1F0CA 3VVJA 3STOA 4EB1L 1XU8A 1DZGL 1AS4A 4AU4A 2HIJI 1DB2A 1ATUA 1BY7A 1JMOA 1R1LI 4EB1I 1DZGI 1SEKA 1IZ2A 2OAYA 4X30A 5INWA 4RSQA 2D26A 4Y3KA 2WY1A 3NDFA 1PSIA 2DUTA 1HLEA 2ZV6A 1ATHA 2WY0C 5BRRI 1TB6I 1T1FA 1C5GA 3T1PA 3CWLA 2PEFA 4P0OA 4ROBA 1EZXA 4G8RA 3EOXA 4DY0A 5CDXA 9APIA 3OZQA 2R9YA 1OO8A 3EVJI 1JRRA 1BR8I 1DZHL 1MTPA 2XN6A 3DLWA 3F02A 2VDXA 4C41A 5CE0A 3KCGI 1JVQI 1DZHI 2H4PA 4ROAA 3H5CA 3DRMA 1OPHA 3LE2A 1HP7A 4AJUA 4AU3B 2VH4A 2ZNHA 1LK6I 3NE4A 4BB2A 4YIAA 1JMJA 5IO1A 1KCTA 1OYHL 1DVMA 4G8OA 1C8OA 1NQ9I 2ACHA 1OYHI 4AFXA 1QMBA 5CDZA 2CEOA 3NDAA 1YXAA 3F1SA 3CWMA 1E05I 2GD4C 4ZK3A 4IC0A 1OVAC 1QLPA 5C98A 1D5SA 4R9IA 2WXYC 1LQ8A 3NDDA 1B3KA 2XN7A 1WZ9A 3DRUA 9PAIA 4AU3A 2B4XL 3F5NA 4RO9A 4KDSA 2RIWA 2XN3A 3FGQA 1A7CA 3PZFA 4GA7A 2B4XI 1AZXI 2VDYA 3Q03A 2XN5A 1E03I 1QMNA 4IF8A 1OVAA 2ARRA 2B5TI 2BEHL 2WXZC 1SR5A 1OVAB 1E04I 1SNGA 4PYWA 1M93B 4ZK0A 2BEHI 2H4QA 5EI0A 1DVNA 4AJTA 2OL2A 1JJOC 3PB1I 4AU2A 3UT3A 1LJ5A 4Y40A 3LW2A 4AQHA 1XQJA 2V95A 2PEEA 4DY7C 5HGCA 2ANTI 3CAAA 2HI9A 2RIVA 3CVMA 1XQGA 2QUGA 2WXXA 2H4RA 4CAAA 2WXWA 3DY0A 3Q02A 4DTEA 1UHGA 7APIA 1K9OI 2WXZA 2ARQA 1ANTI 3ZHAA
chains in the Genus database with same CATH superfamily
3B9FI 1JTIA 1ATTA 1IMVA 8APIA 3R4LA 4C49A 2HIJL 4P0FA 1OC0A 1F0CA 3VVJA 3STOA 4EB1L 1XU8A 1DZGL 1AS4A 4AU4A 2HIJI 1DB2A 1ATUA 1BY7A 1JMOA 1R1LI 4EB1I 1DZGI 1SEKA 1IZ2A 2OAYA 4X30A 5INWA 4RSQA 2D26A 4Y3KA 2WY1A 3NDFA 1PSIA 2DUTA 1HLEA 2ZV6A 1ATHA 2WY0C 5BRRI 1TB6I 1T1FA 1C5GA 3T1PA 3CWLA 2PEFA 4P0OA 4ROBA 1EZXA 4G8RA 3EOXA 4DY0A 5CDXA 9APIA 3OZQA 2R9YA 1OO8A 3EVJI 1JRRA 1BR8I 1DZHL 1MTPA 2XN6A 3DLWA 3F02A 2VDXA 4C41A 5CE0A 3KCGI 1JVQI 1DZHI 2H4PA 4ROAA 3H5CA 3DRMA 1OPHA 3LE2A 1HP7A 4AJUA 4AU3B 2VH4A 2ZNHA 1LK6I 3NE4A 4BB2A 4YIAA 1JMJA 5IO1A 1KCTA 1OYHL 1DVMA 4G8OA 1C8OA 1NQ9I 2ACHA 1OYHI 4AFXA 1QMBA 5CDZA 2CEOA 3NDAA 1YXAA 3F1SA 3CWMA 1E05I 2GD4C 4ZK3A 4IC0A 1OVAC 1QLPA 5C98A 1D5SA 4R9IA 2WXYC 1LQ8A 3NDDA 1B3KA 2XN7A 1WZ9A 3DRUA 9PAIA 4AU3A 2B4XL 3F5NA 4RO9A 4KDSA 2RIWA 2XN3A 3FGQA 1A7CA 3PZFA 4GA7A 2B4XI 1AZXI 2VDYA 3Q03A 2XN5A 1E03I 1QMNA 4IF8A 1OVAA 2ARRA 2B5TI 2BEHL 2WXZC 1SR5A 1OVAB 1E04I 1SNGA 4PYWA 1M93B 4ZK0A 2BEHI 2H4QA 5EI0A 1DVNA 4AJTA 2OL2A 1JJOC 3PB1I 4AU2A 3UT3A 1LJ5A 4Y40A 3LW2A 4AQHA 1XQJA 2V95A 2PEEA 4DY7C 5HGCA 2ANTI 3CAAA 2HI9A 2RIVA 3CVMA 1XQGA 2QUGA 2WXXA 2H4RA 4CAAA 2WXWA 3DY0A 3Q02A 4DTEA 1UHGA 7APIA 1K9OI 2WXZA 2ARQA 1ANTI 3ZHAA
chains in the Genus database with same CATH topology
3B9FI 1JTIA 1ATTA 1IMVA 8APIA 3R4LA 4C49A 2HIJL 4P0FA 1OC0A 1F0CA 3VVJA 3STOA 4EB1L 1XU8A 1DZGL 1AS4A 4AU4A 2HIJI 1DB2A 1ATUA 1BY7A 1JMOA 1R1LI 4EB1I 1DZGI 1SEKA 1IZ2A 2OAYA 4X30A 5INWA 4RSQA 2D26A 4Y3KA 2WY1A 3NDFA 1PSIA 2DUTA 1HLEA 2ZV6A 1ATHA 2WY0C 5BRRI 1TB6I 1T1FA 1C5GA 3T1PA 3CWLA 2PEFA 4P0OA 4ROBA 1EZXA 4G8RA 3EOXA 4DY0A 5CDXA 9APIA 3OZQA 2R9YA 1OO8A 3EVJI 1JRRA 1BR8I 1DZHL 1MTPA 2XN6A 3DLWA 3F02A 2VDXA 4C41A 5CE0A 3KCGI 1JVQI 1DZHI 2H4PA 4ROAA 3H5CA 3DRMA 1OPHA 3LE2A 1HP7A 4AJUA 4AU3B 2VH4A 2ZNHA 1LK6I 3NE4A 4BB2A 4YIAA 1JMJA 5IO1A 1KCTA 1OYHL 1DVMA 4G8OA 1C8OA 1NQ9I 2ACHA 1OYHI 4AFXA 1QMBA 5CDZA 2CEOA 3NDAA 1YXAA 3F1SA 3CWMA 1E05I 2GD4C 4ZK3A 4IC0A 1OVAC 1QLPA 5C98A 1D5SA 4R9IA 2WXYC 1LQ8A 3NDDA 1B3KA 2XN7A 1WZ9A 3DRUA 9PAIA 4AU3A 2B4XL 3F5NA 4RO9A 4KDSA 2RIWA 2XN3A 3FGQA 1A7CA 3PZFA 4GA7A 2B4XI 1AZXI 2VDYA 3Q03A 2XN5A 1E03I 1QMNA 4IF8A 1OVAA 2ARRA 2B5TI 2BEHL 2WXZC 1SR5A 1OVAB 1E04I 1SNGA 4PYWA 1M93B 4ZK0A 2BEHI 2H4QA 5EI0A 1DVNA 4AJTA 2OL2A 1JJOC 3PB1I 4AU2A 3UT3A 1LJ5A 4Y40A 3LW2A 4AQHA 1XQJA 2V95A 2PEEA 4DY7C 5HGCA 2ANTI 3CAAA 2HI9A 2RIVA 3CVMA 1XQGA 2QUGA 2WXXA 2H4RA 4CAAA 2WXWA 3DY0A 3Q02A 4DTEA 1UHGA 7APIA 1K9OI 2WXZA 2ARQA 1ANTI 3ZHAA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3B9F I;  1JTI A;  1ATT A;  1IMV A;  8API A;  3R4L A;  4C49 A;  2HIJ L;  4P0F A;  1OC0 A;  1F0C A;  3VVJ A;  3STO A;  4EB1 L;  1XU8 A;  1DZG L;  1AS4 A;  4AU4 A;  2HIJ I;  1DB2 A;  1ATU A;  1BY7 A;  1JMO A;  1R1L I;  4EB1 I;  1DZG I;  1SEK A;  1IZ2 A;  2OAY A;  4X30 A;  5INW A;  4RSQ A;  2D26 A;  4Y3K A;  2WY1 A;  3NDF A;  1PSI A;  2DUT A;  1HLE A;  2ZV6 A;  1ATH A;  2WY0 C;  5BRR I;  1TB6 I;  1T1F A;  1C5G A;  3T1P A;  3CWL A;  2PEF A;  4P0O A;  4ROB A;  1EZX A;  4G8R A;  3EOX A;  4DY0 A;  5CDX A;  9API A;  3OZQ A;  2R9Y A;  1OO8 A;  3EVJ I;  1JRR A;  1BR8 I;  1DZH L;  1MTP A;  2XN6 A;  3DLW A;  3F02 A;  2VDX A;  4C41 A;  5CE0 A;  3KCG I;  1JVQ I;  1DZH I;  2H4P A;  4ROA A;  3H5C A;  3DRM A;  1OPH A;  3LE2 A;  1HP7 A;  4AJU A;  4AU3 B;  2VH4 A;  2ZNH A;  1LK6 I;  3NE4 A;  4BB2 A;  4YIA A;  1JMJ A;  5IO1 A;  1KCT A;  1OYH L;  1DVM A;  4G8O A;  1C8O A;  1NQ9 I;  2ACH A;  1OYH I;  4AFX A;  1QMB A;  5CDZ A;  2CEO A;  3NDA A;  1YXA A;  3F1S A;  3CWM A;  1E05 I;  2GD4 C;  4ZK3 A;  4IC0 A;  1OVA C;  1QLP A;  5C98 A;  1D5S A;  4R9I A;  2WXY C;  1LQ8 A;  3NDD A;  1B3K A;  2XN7 A;  1WZ9 A;  3DRU A;  9PAI A;  4AU3 A;  2B4X L;  3F5N A;  4RO9 A;  4KDS A;  2RIW A;  2XN3 A;  3FGQ A;  1A7C A;  3PZF A;  4GA7 A;  2B4X I;  1AZX I;  2VDY A;  3Q03 A;  2XN5 A;  1E03 I;  1QMN A;  4IF8 A;  1OVA A;  2ARR A;  2B5T I;  2BEH L;  2WXZ C;  1SR5 A;  1OVA B;  1E04 I;  1SNG A;  4PYW A;  1M93 B;  4ZK0 A;  2BEH I;  2H4Q A;  5EI0 A;  1DVN A;  4AJT A;  2OL2 A;  1JJO C;  3PB1 I;  4AU2 A;  3UT3 A;  1LJ5 A;  4Y40 A;  3LW2 A;  4AQH A;  1XQJ A;  2V95 A;  2PEE A;  4DY7 C;  5HGC A;  2ANT I;  3CAA A;  2HI9 A;  2RIV A;  3CVM A;  1XQG A;  2QUG A;  2WXX A;  2H4R A;  4CAA A;  2WXW A;  3DY0 A;  3Q02 A;  4DTE A;  1UHG A;  7API A;  1K9O I;  2WXZ A;  2ARQ A;  1ANT I;  3ZHA A; 
#chains in the Genus database with same CATH topology
 3B9F I;  1JTI A;  1ATT A;  1IMV A;  8API A;  3R4L A;  4C49 A;  2HIJ L;  4P0F A;  1OC0 A;  1F0C A;  3VVJ A;  3STO A;  4EB1 L;  1XU8 A;  1DZG L;  1AS4 A;  4AU4 A;  2HIJ I;  1DB2 A;  1ATU A;  1BY7 A;  1JMO A;  1R1L I;  4EB1 I;  1DZG I;  1SEK A;  1IZ2 A;  2OAY A;  4X30 A;  5INW A;  4RSQ A;  2D26 A;  4Y3K A;  2WY1 A;  3NDF A;  1PSI A;  2DUT A;  1HLE A;  2ZV6 A;  1ATH A;  2WY0 C;  5BRR I;  1TB6 I;  1T1F A;  1C5G A;  3T1P A;  3CWL A;  2PEF A;  4P0O A;  4ROB A;  1EZX A;  4G8R A;  3EOX A;  4DY0 A;  5CDX A;  9API A;  3OZQ A;  2R9Y A;  1OO8 A;  3EVJ I;  1JRR A;  1BR8 I;  1DZH L;  1MTP A;  2XN6 A;  3DLW A;  3F02 A;  2VDX A;  4C41 A;  5CE0 A;  3KCG I;  1JVQ I;  1DZH I;  2H4P A;  4ROA A;  3H5C A;  3DRM A;  1OPH A;  3LE2 A;  1HP7 A;  4AJU A;  4AU3 B;  2VH4 A;  2ZNH A;  1LK6 I;  3NE4 A;  4BB2 A;  4YIA A;  1JMJ A;  5IO1 A;  1KCT A;  1OYH L;  1DVM A;  4G8O A;  1C8O A;  1NQ9 I;  2ACH A;  1OYH I;  4AFX A;  1QMB A;  5CDZ A;  2CEO A;  3NDA A;  1YXA A;  3F1S A;  3CWM A;  1E05 I;  2GD4 C;  4ZK3 A;  4IC0 A;  1OVA C;  1QLP A;  5C98 A;  1D5S A;  4R9I A;  2WXY C;  1LQ8 A;  3NDD A;  1B3K A;  2XN7 A;  1WZ9 A;  3DRU A;  9PAI A;  4AU3 A;  2B4X L;  3F5N A;  4RO9 A;  4KDS A;  2RIW A;  2XN3 A;  3FGQ A;  1A7C A;  3PZF A;  4GA7 A;  2B4X I;  1AZX I;  2VDY A;  3Q03 A;  2XN5 A;  1E03 I;  1QMN A;  4IF8 A;  1OVA A;  2ARR A;  2B5T I;  2BEH L;  2WXZ C;  1SR5 A;  1OVA B;  1E04 I;  1SNG A;  4PYW A;  1M93 B;  4ZK0 A;  2BEH I;  2H4Q A;  5EI0 A;  1DVN A;  4AJT A;  2OL2 A;  1JJO C;  3PB1 I;  4AU2 A;  3UT3 A;  1LJ5 A;  4Y40 A;  3LW2 A;  4AQH A;  1XQJ A;  2V95 A;  2PEE A;  4DY7 C;  5HGC A;  2ANT I;  3CAA A;  2HI9 A;  2RIV A;  3CVM A;  1XQG A;  2QUG A;  2WXX A;  2H4R A;  4CAA A;  2WXW A;  3DY0 A;  3Q02 A;  4DTE A;  1UHG A;  7API A;  1K9O I;  2WXZ A;  2ARQ A;  1ANT I;  3ZHA A; 
#chains in the Genus database with same CATH homology
 3B9F I;  1JTI A;  1ATT A;  1IMV A;  8API A;  3R4L A;  4C49 A;  2HIJ L;  4P0F A;  1OC0 A;  1F0C A;  3VVJ A;  3STO A;  4EB1 L;  1XU8 A;  1DZG L;  1AS4 A;  4AU4 A;  2HIJ I;  1DB2 A;  1ATU A;  1BY7 A;  1JMO A;  1R1L I;  4EB1 I;  1DZG I;  1SEK A;  1IZ2 A;  2OAY A;  4X30 A;  5INW A;  4RSQ A;  2D26 A;  4Y3K A;  2WY1 A;  3NDF A;  1PSI A;  2DUT A;  1HLE A;  2ZV6 A;  1ATH A;  2WY0 C;  5BRR I;  1TB6 I;  1T1F A;  1C5G A;  3T1P A;  3CWL A;  2PEF A;  4P0O A;  4ROB A;  1EZX A;  4G8R A;  3EOX A;  4DY0 A;  5CDX A;  9API A;  3OZQ A;  2R9Y A;  1OO8 A;  3EVJ I;  1JRR A;  1BR8 I;  1DZH L;  1MTP A;  2XN6 A;  3DLW A;  3F02 A;  2VDX A;  4C41 A;  5CE0 A;  3KCG I;  1JVQ I;  1DZH I;  2H4P A;  4ROA A;  3H5C A;  3DRM A;  1OPH A;  3LE2 A;  1HP7 A;  4AJU A;  4AU3 B;  2VH4 A;  2ZNH A;  1LK6 I;  3NE4 A;  4BB2 A;  4YIA A;  1JMJ A;  5IO1 A;  1KCT A;  1OYH L;  1DVM A;  4G8O A;  1C8O A;  1NQ9 I;  2ACH A;  1OYH I;  4AFX A;  1QMB A;  5CDZ A;  2CEO A;  3NDA A;  1YXA A;  3F1S A;  3CWM A;  1E05 I;  2GD4 C;  4ZK3 A;  4IC0 A;  1OVA C;  1QLP A;  5C98 A;  1D5S A;  4R9I A;  2WXY C;  1LQ8 A;  3NDD A;  1B3K A;  2XN7 A;  1WZ9 A;  3DRU A;  9PAI A;  4AU3 A;  2B4X L;  3F5N A;  4RO9 A;  4KDS A;  2RIW A;  2XN3 A;  3FGQ A;  1A7C A;  3PZF A;  4GA7 A;  2B4X I;  1AZX I;  2VDY A;  3Q03 A;  2XN5 A;  1E03 I;  1QMN A;  4IF8 A;  1OVA A;  2ARR A;  2B5T I;  2BEH L;  2WXZ C;  1SR5 A;  1OVA B;  1E04 I;  1SNG A;  4PYW A;  1M93 B;  4ZK0 A;  2BEH I;  2H4Q A;  5EI0 A;  1DVN A;  4AJT A;  2OL2 A;  1JJO C;  3PB1 I;  4AU2 A;  3UT3 A;  1LJ5 A;  4Y40 A;  3LW2 A;  4AQH A;  1XQJ A;  2V95 A;  2PEE A;  4DY7 C;  5HGC A;  2ANT I;  3CAA A;  2HI9 A;  2RIV A;  3CVM A;  1XQG A;  2QUG A;  2WXX A;  2H4R A;  4CAA A;  2WXW A;  3DY0 A;  3Q02 A;  4DTE A;  1UHG A;  7API A;  1K9O I;  2WXZ A;  2ARQ A;  1ANT I;  3ZHA A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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