3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
molecule keywords Ovalbumin
molecule tags Hydrolase inhibitor
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
2GD4C 1ANTI 4ROAA 2OAYA 1A7CA 3NDAA 1QMNA 1OC0A 2HI9A 3EOXA 2H4RA 4DY7C 2WXWA 4BB2A 1DB2A 3DRUA 1B3KA 3F02A 4EB1L 3LE2A 2WXXA 3CAAA 1C5GA 1XQGA 3UT3A 5C98A 1QMBA 1SEKA 4P0OA 2BEHL 4GA7A 1ATTA 1BY7A 4Y3KA 2ACHA 3R4LA 2B4XI 1OVAB 1AS4A 4G8OA 9PAIA 1UHGA 2VH4A 3Q03A 2WY0C 3CWLA 1JMOA 1NQ9I 4YIAA 1C8OA 2R9YA 2RIWA 3KCGI 1DZGI 5HGCA 4RSQA 4AFXA 4AU3B 1LQ8A 3DLWA 2HIJL 5CE0A 1JTIA 3LW2A 1EZXA 1F0CA 2ZV6A 4AJTA 4AQHA 1DZHI 3NDDA 2XN6A 1K9OI 1OYHI 4C49A 4P0FA 2PEEA 2B5TI 4IC0A 5CDZA 4ZK0A 1OVAA 5BRRI 2ZNHA 1E04I 1QLPA 1WZ9A 1TB6I 2XN5A 3F5NA 1SNGA 2VDXA 4Y40A 3F1SA 1PSIA 3ZHAA 4G8RA 4C41A 1XQJA 5IO1A 4DTEA 1HP7A 2H4QA 2RIVA 1D5SA 1T1FA 4ROBA 2WXYC 1R1LI 3DY0A 2B4XL 4PYWA 1LJ5A 1E03I 2PEFA 4AU4A 5INWA 2QUGA 2WXZC 2CEOA 2XN7A 1DZGL 4ZK3A 2H4PA 5EI0A 3DRMA 3FGQA 3Q02A 1YXAA 3B9FI 1BR8I 1MTPA 2ANTI 4EB1I 4CAAA 9APIA 4IF8A 3STOA 1DZHL 1ATUA 2ARRA 4AU3A 1OYHL 1XU8A 1LK6I 3CWMA 2VDYA 2BEHI 1E05I 4RO9A 1DVNA 4DY0A 1JVQI 4X30A 3T1PA 3PZFA 4KDSA 3VVJA 3OZQA 2WXZA 3CVMA 1OPHA 1JJOC 3NDFA 3EVJI 3PB1I 1HLEA 1DVMA 2D26A 3H5CA 7APIA 2HIJI 2V95A 4AU2A 2ARQA 2DUTA 4R9IA 1M93B 2XN3A 1OVAC 1SR5A 1JRRA 1AZXI 1IMVA 1OO8A 8APIA 1KCTA 5CDXA 1ATHA 1JMJA 2WY1A 2OL2A 1IZ2A 4AJUA 3NE4A
chains in the Genus database with same CATH superfamily
2GD4C 1ANTI 4ROAA 2OAYA 1A7CA 3NDAA 1QMNA 1OC0A 2HI9A 3EOXA 2H4RA 4DY7C 2WXWA 4BB2A 1DB2A 3DRUA 1B3KA 3F02A 4EB1L 3LE2A 2WXXA 3CAAA 1C5GA 1XQGA 3UT3A 5C98A 1QMBA 1SEKA 4P0OA 2BEHL 4GA7A 1ATTA 1BY7A 4Y3KA 2ACHA 3R4LA 2B4XI 1OVAB 1AS4A 4G8OA 9PAIA 1UHGA 2VH4A 3Q03A 2WY0C 3CWLA 1JMOA 1NQ9I 4YIAA 1C8OA 2R9YA 2RIWA 3KCGI 1DZGI 5HGCA 4RSQA 4AFXA 4AU3B 1LQ8A 3DLWA 2HIJL 5CE0A 1JTIA 3LW2A 1EZXA 1F0CA 2ZV6A 4AJTA 4AQHA 1DZHI 3NDDA 2XN6A 1K9OI 1OYHI 4C49A 4P0FA 2PEEA 2B5TI 4IC0A 5CDZA 4ZK0A 1OVAA 5BRRI 2ZNHA 1E04I 1QLPA 1WZ9A 1TB6I 2XN5A 3F5NA 1SNGA 2VDXA 4Y40A 3F1SA 1PSIA 3ZHAA 4G8RA 4C41A 1XQJA 5IO1A 4DTEA 1HP7A 2H4QA 2RIVA 1D5SA 1T1FA 4ROBA 2WXYC 1R1LI 3DY0A 2B4XL 4PYWA 1LJ5A 1E03I 2PEFA 4AU4A 5INWA 2QUGA 2WXZC 2CEOA 2XN7A 1DZGL 4ZK3A 2H4PA 5EI0A 3DRMA 3FGQA 3Q02A 1YXAA 3B9FI 1BR8I 1MTPA 2ANTI 4EB1I 4CAAA 9APIA 4IF8A 3STOA 1DZHL 1ATUA 2ARRA 4AU3A 1OYHL 1XU8A 1LK6I 3CWMA 2VDYA 2BEHI 1E05I 4RO9A 1DVNA 4DY0A 1JVQI 4X30A 3T1PA 3PZFA 4KDSA 3VVJA 3OZQA 2WXZA 3CVMA 1OPHA 1JJOC 3NDFA 3EVJI 3PB1I 1HLEA 1DVMA 2D26A 3H5CA 7APIA 2HIJI 2V95A 4AU2A 2ARQA 2DUTA 4R9IA 1M93B 2XN3A 1OVAC 1SR5A 1JRRA 1AZXI 1IMVA 1OO8A 8APIA 1KCTA 5CDXA 1ATHA 1JMJA 2WY1A 2OL2A 1IZ2A 4AJUA 3NE4A
chains in the Genus database with same CATH topology
2GD4C 1ANTI 4ROAA 2OAYA 1A7CA 3NDAA 1QMNA 1OC0A 2HI9A 3EOXA 2H4RA 4DY7C 2WXWA 4BB2A 1DB2A 3DRUA 1B3KA 3F02A 4EB1L 3LE2A 2WXXA 3CAAA 1C5GA 1XQGA 3UT3A 5C98A 1QMBA 1SEKA 4P0OA 2BEHL 4GA7A 1ATTA 1BY7A 4Y3KA 2ACHA 3R4LA 2B4XI 1OVAB 1AS4A 4G8OA 9PAIA 1UHGA 2VH4A 3Q03A 2WY0C 3CWLA 1JMOA 1NQ9I 4YIAA 1C8OA 2R9YA 2RIWA 3KCGI 1DZGI 5HGCA 4RSQA 4AFXA 4AU3B 1LQ8A 3DLWA 2HIJL 5CE0A 1JTIA 3LW2A 1EZXA 1F0CA 2ZV6A 4AJTA 4AQHA 1DZHI 3NDDA 2XN6A 1K9OI 1OYHI 4C49A 4P0FA 2PEEA 2B5TI 4IC0A 5CDZA 4ZK0A 1OVAA 5BRRI 2ZNHA 1E04I 1QLPA 1WZ9A 1TB6I 2XN5A 3F5NA 1SNGA 2VDXA 4Y40A 3F1SA 1PSIA 3ZHAA 4G8RA 4C41A 1XQJA 5IO1A 4DTEA 1HP7A 2H4QA 2RIVA 1D5SA 1T1FA 4ROBA 2WXYC 1R1LI 3DY0A 2B4XL 4PYWA 1LJ5A 1E03I 2PEFA 4AU4A 5INWA 2QUGA 2WXZC 2CEOA 2XN7A 1DZGL 4ZK3A 2H4PA 5EI0A 3DRMA 3FGQA 3Q02A 1YXAA 3B9FI 1BR8I 1MTPA 2ANTI 4EB1I 4CAAA 9APIA 4IF8A 3STOA 1DZHL 1ATUA 2ARRA 4AU3A 1OYHL 1XU8A 1LK6I 3CWMA 2VDYA 2BEHI 1E05I 4RO9A 1DVNA 4DY0A 1JVQI 4X30A 3T1PA 3PZFA 4KDSA 3VVJA 3OZQA 2WXZA 3CVMA 1OPHA 1JJOC 3NDFA 3EVJI 3PB1I 1HLEA 1DVMA 2D26A 3H5CA 7APIA 2HIJI 2V95A 4AU2A 2ARQA 2DUTA 4R9IA 1M93B 2XN3A 1OVAC 1SR5A 1JRRA 1AZXI 1IMVA 1OO8A 8APIA 1KCTA 5CDXA 1ATHA 1JMJA 2WY1A 2OL2A 1IZ2A 4AJUA 3NE4A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2GD4 C;  1ANT I;  4ROA A;  2OAY A;  1A7C A;  3NDA A;  1QMN A;  1OC0 A;  2HI9 A;  3EOX A;  2H4R A;  4DY7 C;  2WXW A;  4BB2 A;  1DB2 A;  3DRU A;  1B3K A;  3F02 A;  4EB1 L;  3LE2 A;  2WXX A;  3CAA A;  1C5G A;  1XQG A;  3UT3 A;  5C98 A;  1QMB A;  1SEK A;  4P0O A;  2BEH L;  4GA7 A;  1ATT A;  1BY7 A;  4Y3K A;  2ACH A;  3R4L A;  2B4X I;  1OVA B;  1AS4 A;  4G8O A;  9PAI A;  1UHG A;  2VH4 A;  3Q03 A;  2WY0 C;  3CWL A;  1JMO A;  1NQ9 I;  4YIA A;  1C8O A;  2R9Y A;  2RIW A;  3KCG I;  1DZG I;  5HGC A;  4RSQ A;  4AFX A;  4AU3 B;  1LQ8 A;  3DLW A;  2HIJ L;  5CE0 A;  1JTI A;  3LW2 A;  1EZX A;  1F0C A;  2ZV6 A;  4AJT A;  4AQH A;  1DZH I;  3NDD A;  2XN6 A;  1K9O I;  1OYH I;  4C49 A;  4P0F A;  2PEE A;  2B5T I;  4IC0 A;  5CDZ A;  4ZK0 A;  1OVA A;  5BRR I;  2ZNH A;  1E04 I;  1QLP A;  1WZ9 A;  1TB6 I;  2XN5 A;  3F5N A;  1SNG A;  2VDX A;  4Y40 A;  3F1S A;  1PSI A;  3ZHA A;  4G8R A;  4C41 A;  1XQJ A;  5IO1 A;  4DTE A;  1HP7 A;  2H4Q A;  2RIV A;  1D5S A;  1T1F A;  4ROB A;  2WXY C;  1R1L I;  3DY0 A;  2B4X L;  4PYW A;  1LJ5 A;  1E03 I;  2PEF A;  4AU4 A;  5INW A;  2QUG A;  2WXZ C;  2CEO A;  2XN7 A;  1DZG L;  4ZK3 A;  2H4P A;  5EI0 A;  3DRM A;  3FGQ A;  3Q02 A;  1YXA A;  3B9F I;  1BR8 I;  1MTP A;  2ANT I;  4EB1 I;  4CAA A;  9API A;  4IF8 A;  3STO A;  1DZH L;  1ATU A;  2ARR A;  4AU3 A;  1OYH L;  1XU8 A;  1LK6 I;  3CWM A;  2VDY A;  2BEH I;  1E05 I;  4RO9 A;  1DVN A;  4DY0 A;  1JVQ I;  4X30 A;  3T1P A;  3PZF A;  4KDS A;  3VVJ A;  3OZQ A;  2WXZ A;  3CVM A;  1OPH A;  1JJO C;  3NDF A;  3EVJ I;  3PB1 I;  1HLE A;  1DVM A;  2D26 A;  3H5C A;  7API A;  2HIJ I;  2V95 A;  4AU2 A;  2ARQ A;  2DUT A;  4R9I A;  1M93 B;  2XN3 A;  1OVA C;  1SR5 A;  1JRR A;  1AZX I;  1IMV A;  1OO8 A;  8API A;  1KCT A;  5CDX A;  1ATH A;  1JMJ A;  2WY1 A;  2OL2 A;  1IZ2 A;  4AJU A;  3NE4 A; 
#chains in the Genus database with same CATH topology
 2GD4 C;  1ANT I;  4ROA A;  2OAY A;  1A7C A;  3NDA A;  1QMN A;  1OC0 A;  2HI9 A;  3EOX A;  2H4R A;  4DY7 C;  2WXW A;  4BB2 A;  1DB2 A;  3DRU A;  1B3K A;  3F02 A;  4EB1 L;  3LE2 A;  2WXX A;  3CAA A;  1C5G A;  1XQG A;  3UT3 A;  5C98 A;  1QMB A;  1SEK A;  4P0O A;  2BEH L;  4GA7 A;  1ATT A;  1BY7 A;  4Y3K A;  2ACH A;  3R4L A;  2B4X I;  1OVA B;  1AS4 A;  4G8O A;  9PAI A;  1UHG A;  2VH4 A;  3Q03 A;  2WY0 C;  3CWL A;  1JMO A;  1NQ9 I;  4YIA A;  1C8O A;  2R9Y A;  2RIW A;  3KCG I;  1DZG I;  5HGC A;  4RSQ A;  4AFX A;  4AU3 B;  1LQ8 A;  3DLW A;  2HIJ L;  5CE0 A;  1JTI A;  3LW2 A;  1EZX A;  1F0C A;  2ZV6 A;  4AJT A;  4AQH A;  1DZH I;  3NDD A;  2XN6 A;  1K9O I;  1OYH I;  4C49 A;  4P0F A;  2PEE A;  2B5T I;  4IC0 A;  5CDZ A;  4ZK0 A;  1OVA A;  5BRR I;  2ZNH A;  1E04 I;  1QLP A;  1WZ9 A;  1TB6 I;  2XN5 A;  3F5N A;  1SNG A;  2VDX A;  4Y40 A;  3F1S A;  1PSI A;  3ZHA A;  4G8R A;  4C41 A;  1XQJ A;  5IO1 A;  4DTE A;  1HP7 A;  2H4Q A;  2RIV A;  1D5S A;  1T1F A;  4ROB A;  2WXY C;  1R1L I;  3DY0 A;  2B4X L;  4PYW A;  1LJ5 A;  1E03 I;  2PEF A;  4AU4 A;  5INW A;  2QUG A;  2WXZ C;  2CEO A;  2XN7 A;  1DZG L;  4ZK3 A;  2H4P A;  5EI0 A;  3DRM A;  3FGQ A;  3Q02 A;  1YXA A;  3B9F I;  1BR8 I;  1MTP A;  2ANT I;  4EB1 I;  4CAA A;  9API A;  4IF8 A;  3STO A;  1DZH L;  1ATU A;  2ARR A;  4AU3 A;  1OYH L;  1XU8 A;  1LK6 I;  3CWM A;  2VDY A;  2BEH I;  1E05 I;  4RO9 A;  1DVN A;  4DY0 A;  1JVQ I;  4X30 A;  3T1P A;  3PZF A;  4KDS A;  3VVJ A;  3OZQ A;  2WXZ A;  3CVM A;  1OPH A;  1JJO C;  3NDF A;  3EVJ I;  3PB1 I;  1HLE A;  1DVM A;  2D26 A;  3H5C A;  7API A;  2HIJ I;  2V95 A;  4AU2 A;  2ARQ A;  2DUT A;  4R9I A;  1M93 B;  2XN3 A;  1OVA C;  1SR5 A;  1JRR A;  1AZX I;  1IMV A;  1OO8 A;  8API A;  1KCT A;  5CDX A;  1ATH A;  1JMJ A;  2WY1 A;  2OL2 A;  1IZ2 A;  4AJU A;  3NE4 A; 
#chains in the Genus database with same CATH homology
 2GD4 C;  1ANT I;  4ROA A;  2OAY A;  1A7C A;  3NDA A;  1QMN A;  1OC0 A;  2HI9 A;  3EOX A;  2H4R A;  4DY7 C;  2WXW A;  4BB2 A;  1DB2 A;  3DRU A;  1B3K A;  3F02 A;  4EB1 L;  3LE2 A;  2WXX A;  3CAA A;  1C5G A;  1XQG A;  3UT3 A;  5C98 A;  1QMB A;  1SEK A;  4P0O A;  2BEH L;  4GA7 A;  1ATT A;  1BY7 A;  4Y3K A;  2ACH A;  3R4L A;  2B4X I;  1OVA B;  1AS4 A;  4G8O A;  9PAI A;  1UHG A;  2VH4 A;  3Q03 A;  2WY0 C;  3CWL A;  1JMO A;  1NQ9 I;  4YIA A;  1C8O A;  2R9Y A;  2RIW A;  3KCG I;  1DZG I;  5HGC A;  4RSQ A;  4AFX A;  4AU3 B;  1LQ8 A;  3DLW A;  2HIJ L;  5CE0 A;  1JTI A;  3LW2 A;  1EZX A;  1F0C A;  2ZV6 A;  4AJT A;  4AQH A;  1DZH I;  3NDD A;  2XN6 A;  1K9O I;  1OYH I;  4C49 A;  4P0F A;  2PEE A;  2B5T I;  4IC0 A;  5CDZ A;  4ZK0 A;  1OVA A;  5BRR I;  2ZNH A;  1E04 I;  1QLP A;  1WZ9 A;  1TB6 I;  2XN5 A;  3F5N A;  1SNG A;  2VDX A;  4Y40 A;  3F1S A;  1PSI A;  3ZHA A;  4G8R A;  4C41 A;  1XQJ A;  5IO1 A;  4DTE A;  1HP7 A;  2H4Q A;  2RIV A;  1D5S A;  1T1F A;  4ROB A;  2WXY C;  1R1L I;  3DY0 A;  2B4X L;  4PYW A;  1LJ5 A;  1E03 I;  2PEF A;  4AU4 A;  5INW A;  2QUG A;  2WXZ C;  2CEO A;  2XN7 A;  1DZG L;  4ZK3 A;  2H4P A;  5EI0 A;  3DRM A;  3FGQ A;  3Q02 A;  1YXA A;  3B9F I;  1BR8 I;  1MTP A;  2ANT I;  4EB1 I;  4CAA A;  9API A;  4IF8 A;  3STO A;  1DZH L;  1ATU A;  2ARR A;  4AU3 A;  1OYH L;  1XU8 A;  1LK6 I;  3CWM A;  2VDY A;  2BEH I;  1E05 I;  4RO9 A;  1DVN A;  4DY0 A;  1JVQ I;  4X30 A;  3T1P A;  3PZF A;  4KDS A;  3VVJ A;  3OZQ A;  2WXZ A;  3CVM A;  1OPH A;  1JJO C;  3NDF A;  3EVJ I;  3PB1 I;  1HLE A;  1DVM A;  2D26 A;  3H5C A;  7API A;  2HIJ I;  2V95 A;  4AU2 A;  2ARQ A;  2DUT A;  4R9I A;  1M93 B;  2XN3 A;  1OVA C;  1SR5 A;  1JRR A;  1AZX I;  1IMV A;  1OO8 A;  8API A;  1KCT A;  5CDX A;  1ATH A;  1JMJ A;  2WY1 A;  2OL2 A;  1IZ2 A;  4AJU A;  3NE4 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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