3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Ovalbumin
publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
4Y40A 2H4RA 1C5GA 2VDXA 1LQ8A 1ATUA 3EVJI 3FGQA 4YIAA 4IC0A 1UHGA 1DZGL 1ATHA 2XN6A 3CWLA 2B4XL 2WXZC 3PB1I 1SR5A 2ACHA 4R9IA 3NDAA 1OVAC 3LW2A 5CE0A 1AS4A 3Q02A 4C49A 3EOXA 1YXAA 3STOA 4EB1L 1LK6I 2BEHL 2VH4A 3CWMA 2ANTI 2B5TI 3T1PA 2ARRA 4AJTA 1QMBA 1DB2A 5C98A 4AJUA 1TB6I 2WY0C 1ANTI 3Q03A 4RSQA 3B9FI 2R9YA 1SEKA 1SNGA 1DVMA 4AQHA 5BRRI 1WZ9A 1EZXA 1R1LI 2CEOA 2WXYC 1F0CA 1DVNA 1IZ2A 2HIJL 1HP7A 4ROAA 1LJ5A 1DZHI 4BB2A 1B3KA 1E03I 1NQ9I 2HIJI 4AU3A 4GA7A 1A7CA 1OVAA 4ZK3A 9APIA 3F5NA 1BY7A 1JMJA 3NDFA 2D26A 4ZK0A 3NE4A 2OAYA 4DY7C 1E05I 1ATTA 1JVQI 2QUGA 1OO8A 3KCGI 3DLWA 4Y3KA 1DZHL 4RO9A 4KDSA 4IF8A 1M93B 3DY0A 4C41A 8APIA 4P0FA 1IMVA 1C8OA 2H4PA 2H4QA 2V95A 1MTPA 3F02A 3ZHAA 1JJOC 5CDZA 2ZV6A 2RIWA 3VVJA 3R4LA 4PYWA 1JRRA 2WXZA 4AU2A 2WY1A 4X30A 1JTIA 2PEFA 2XN5A 4AU4A 1XQJA 1AZXI 2OL2A 3LE2A 2DUTA 1BR8I 4G8RA 5EI0A 4AFXA 2WXWA 3DRMA 1XU8A 4ROBA 4DY0A 2PEEA 2WXXA 1OC0A 3UT3A 5INWA 4CAAA 5IO1A 1PSIA 1QMNA 3PZFA 1OYHL 3OZQA 1QLPA 9PAIA 2GD4C 2RIVA 3NDDA 7APIA 3CAAA 2ZNHA 1HLEA 4P0OA 4AU3B 1D5SA 1JMOA 2XN3A 1XQGA 4G8OA 4DTEA 1OVAB 3DRUA 1DZGI 1OYHI 3F1SA 2ARQA 1OPHA 1T1FA 2B4XI 5HGCA 1KCTA 2XN7A 3CVMA 5CDXA 1K9OI 1E04I 3H5CA 4EB1I 2HI9A 2VDYA 2BEHI
chains in the Genus database with same CATH superfamily
4Y40A 2H4RA 1C5GA 2VDXA 1LQ8A 1ATUA 3EVJI 3FGQA 4YIAA 4IC0A 1UHGA 1DZGL 1ATHA 2XN6A 3CWLA 2B4XL 2WXZC 3PB1I 1SR5A 2ACHA 4R9IA 3NDAA 1OVAC 3LW2A 5CE0A 1AS4A 3Q02A 4C49A 3EOXA 1YXAA 3STOA 4EB1L 1LK6I 2BEHL 2VH4A 3CWMA 2ANTI 2B5TI 3T1PA 2ARRA 4AJTA 1QMBA 1DB2A 5C98A 4AJUA 1TB6I 2WY0C 1ANTI 3Q03A 4RSQA 3B9FI 2R9YA 1SEKA 1SNGA 1DVMA 4AQHA 5BRRI 1WZ9A 1EZXA 1R1LI 2CEOA 2WXYC 1F0CA 1DVNA 1IZ2A 2HIJL 1HP7A 4ROAA 1LJ5A 1DZHI 4BB2A 1B3KA 1E03I 1NQ9I 2HIJI 4AU3A 4GA7A 1A7CA 1OVAA 4ZK3A 9APIA 3F5NA 1BY7A 1JMJA 3NDFA 2D26A 4ZK0A 3NE4A 2OAYA 4DY7C 1E05I 1ATTA 1JVQI 2QUGA 1OO8A 3KCGI 3DLWA 4Y3KA 1DZHL 4RO9A 4KDSA 4IF8A 1M93B 3DY0A 4C41A 8APIA 4P0FA 1IMVA 1C8OA 2H4PA 2H4QA 2V95A 1MTPA 3F02A 3ZHAA 1JJOC 5CDZA 2ZV6A 2RIWA 3VVJA 3R4LA 4PYWA 1JRRA 2WXZA 4AU2A 2WY1A 4X30A 1JTIA 2PEFA 2XN5A 4AU4A 1XQJA 1AZXI 2OL2A 3LE2A 2DUTA 1BR8I 4G8RA 5EI0A 4AFXA 2WXWA 3DRMA 1XU8A 4ROBA 4DY0A 2PEEA 2WXXA 1OC0A 3UT3A 5INWA 4CAAA 5IO1A 1PSIA 1QMNA 3PZFA 1OYHL 3OZQA 1QLPA 9PAIA 2GD4C 2RIVA 3NDDA 7APIA 3CAAA 2ZNHA 1HLEA 4P0OA 4AU3B 1D5SA 1JMOA 2XN3A 1XQGA 4G8OA 4DTEA 1OVAB 3DRUA 1DZGI 1OYHI 3F1SA 2ARQA 1OPHA 1T1FA 2B4XI 5HGCA 1KCTA 2XN7A 3CVMA 5CDXA 1K9OI 1E04I 3H5CA 4EB1I 2HI9A 2VDYA 2BEHI
chains in the Genus database with same CATH topology
4Y40A 2H4RA 1C5GA 2VDXA 1LQ8A 1ATUA 3EVJI 3FGQA 4YIAA 4IC0A 1UHGA 1DZGL 1ATHA 2XN6A 3CWLA 2B4XL 2WXZC 3PB1I 1SR5A 2ACHA 4R9IA 3NDAA 1OVAC 3LW2A 5CE0A 1AS4A 3Q02A 4C49A 3EOXA 1YXAA 3STOA 4EB1L 1LK6I 2BEHL 2VH4A 3CWMA 2ANTI 2B5TI 3T1PA 2ARRA 4AJTA 1QMBA 1DB2A 5C98A 4AJUA 1TB6I 2WY0C 1ANTI 3Q03A 4RSQA 3B9FI 2R9YA 1SEKA 1SNGA 1DVMA 4AQHA 5BRRI 1WZ9A 1EZXA 1R1LI 2CEOA 2WXYC 1F0CA 1DVNA 1IZ2A 2HIJL 1HP7A 4ROAA 1LJ5A 1DZHI 4BB2A 1B3KA 1E03I 1NQ9I 2HIJI 4AU3A 4GA7A 1A7CA 1OVAA 4ZK3A 9APIA 3F5NA 1BY7A 1JMJA 3NDFA 2D26A 4ZK0A 3NE4A 2OAYA 4DY7C 1E05I 1ATTA 1JVQI 2QUGA 1OO8A 3KCGI 3DLWA 4Y3KA 1DZHL 4RO9A 4KDSA 4IF8A 1M93B 3DY0A 4C41A 8APIA 4P0FA 1IMVA 1C8OA 2H4PA 2H4QA 2V95A 1MTPA 3F02A 3ZHAA 1JJOC 5CDZA 2ZV6A 2RIWA 3VVJA 3R4LA 4PYWA 1JRRA 2WXZA 4AU2A 2WY1A 4X30A 1JTIA 2PEFA 2XN5A 4AU4A 1XQJA 1AZXI 2OL2A 3LE2A 2DUTA 1BR8I 4G8RA 5EI0A 4AFXA 2WXWA 3DRMA 1XU8A 4ROBA 4DY0A 2PEEA 2WXXA 1OC0A 3UT3A 5INWA 4CAAA 5IO1A 1PSIA 1QMNA 3PZFA 1OYHL 3OZQA 1QLPA 9PAIA 2GD4C 2RIVA 3NDDA 7APIA 3CAAA 2ZNHA 1HLEA 4P0OA 4AU3B 1D5SA 1JMOA 2XN3A 1XQGA 4G8OA 4DTEA 1OVAB 3DRUA 1DZGI 1OYHI 3F1SA 2ARQA 1OPHA 1T1FA 2B4XI 5HGCA 1KCTA 2XN7A 3CVMA 5CDXA 1K9OI 1E04I 3H5CA 4EB1I 2HI9A 2VDYA 2BEHI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Y40 A;  2H4R A;  1C5G A;  2VDX A;  1LQ8 A;  1ATU A;  3EVJ I;  3FGQ A;  4YIA A;  4IC0 A;  1UHG A;  1DZG L;  1ATH A;  2XN6 A;  3CWL A;  2B4X L;  2WXZ C;  3PB1 I;  1SR5 A;  2ACH A;  4R9I A;  3NDA A;  1OVA C;  3LW2 A;  5CE0 A;  1AS4 A;  3Q02 A;  4C49 A;  3EOX A;  1YXA A;  3STO A;  4EB1 L;  1LK6 I;  2BEH L;  2VH4 A;  3CWM A;  2ANT I;  2B5T I;  3T1P A;  2ARR A;  4AJT A;  1QMB A;  1DB2 A;  5C98 A;  4AJU A;  1TB6 I;  2WY0 C;  1ANT I;  3Q03 A;  4RSQ A;  3B9F I;  2R9Y A;  1SEK A;  1SNG A;  1DVM A;  4AQH A;  5BRR I;  1WZ9 A;  1EZX A;  1R1L I;  2CEO A;  2WXY C;  1F0C A;  1DVN A;  1IZ2 A;  2HIJ L;  1HP7 A;  4ROA A;  1LJ5 A;  1DZH I;  4BB2 A;  1B3K A;  1E03 I;  1NQ9 I;  2HIJ I;  4AU3 A;  4GA7 A;  1A7C A;  1OVA A;  4ZK3 A;  9API A;  3F5N A;  1BY7 A;  1JMJ A;  3NDF A;  2D26 A;  4ZK0 A;  3NE4 A;  2OAY A;  4DY7 C;  1E05 I;  1ATT A;  1JVQ I;  2QUG A;  1OO8 A;  3KCG I;  3DLW A;  4Y3K A;  1DZH L;  4RO9 A;  4KDS A;  4IF8 A;  1M93 B;  3DY0 A;  4C41 A;  8API A;  4P0F A;  1IMV A;  1C8O A;  2H4P A;  2H4Q A;  2V95 A;  1MTP A;  3F02 A;  3ZHA A;  1JJO C;  5CDZ A;  2ZV6 A;  2RIW A;  3VVJ A;  3R4L A;  4PYW A;  1JRR A;  2WXZ A;  4AU2 A;  2WY1 A;  4X30 A;  1JTI A;  2PEF A;  2XN5 A;  4AU4 A;  1XQJ A;  1AZX I;  2OL2 A;  3LE2 A;  2DUT A;  1BR8 I;  4G8R A;  5EI0 A;  4AFX A;  2WXW A;  3DRM A;  1XU8 A;  4ROB A;  4DY0 A;  2PEE A;  2WXX A;  1OC0 A;  3UT3 A;  5INW A;  4CAA A;  5IO1 A;  1PSI A;  1QMN A;  3PZF A;  1OYH L;  3OZQ A;  1QLP A;  9PAI A;  2GD4 C;  2RIV A;  3NDD A;  7API A;  3CAA A;  2ZNH A;  1HLE A;  4P0O A;  4AU3 B;  1D5S A;  1JMO A;  2XN3 A;  1XQG A;  4G8O A;  4DTE A;  1OVA B;  3DRU A;  1DZG I;  1OYH I;  3F1S A;  2ARQ A;  1OPH A;  1T1F A;  2B4X I;  5HGC A;  1KCT A;  2XN7 A;  3CVM A;  5CDX A;  1K9O I;  1E04 I;  3H5C A;  4EB1 I;  2HI9 A;  2VDY A;  2BEH I; 
#chains in the Genus database with same CATH topology
 4Y40 A;  2H4R A;  1C5G A;  2VDX A;  1LQ8 A;  1ATU A;  3EVJ I;  3FGQ A;  4YIA A;  4IC0 A;  1UHG A;  1DZG L;  1ATH A;  2XN6 A;  3CWL A;  2B4X L;  2WXZ C;  3PB1 I;  1SR5 A;  2ACH A;  4R9I A;  3NDA A;  1OVA C;  3LW2 A;  5CE0 A;  1AS4 A;  3Q02 A;  4C49 A;  3EOX A;  1YXA A;  3STO A;  4EB1 L;  1LK6 I;  2BEH L;  2VH4 A;  3CWM A;  2ANT I;  2B5T I;  3T1P A;  2ARR A;  4AJT A;  1QMB A;  1DB2 A;  5C98 A;  4AJU A;  1TB6 I;  2WY0 C;  1ANT I;  3Q03 A;  4RSQ A;  3B9F I;  2R9Y A;  1SEK A;  1SNG A;  1DVM A;  4AQH A;  5BRR I;  1WZ9 A;  1EZX A;  1R1L I;  2CEO A;  2WXY C;  1F0C A;  1DVN A;  1IZ2 A;  2HIJ L;  1HP7 A;  4ROA A;  1LJ5 A;  1DZH I;  4BB2 A;  1B3K A;  1E03 I;  1NQ9 I;  2HIJ I;  4AU3 A;  4GA7 A;  1A7C A;  1OVA A;  4ZK3 A;  9API A;  3F5N A;  1BY7 A;  1JMJ A;  3NDF A;  2D26 A;  4ZK0 A;  3NE4 A;  2OAY A;  4DY7 C;  1E05 I;  1ATT A;  1JVQ I;  2QUG A;  1OO8 A;  3KCG I;  3DLW A;  4Y3K A;  1DZH L;  4RO9 A;  4KDS A;  4IF8 A;  1M93 B;  3DY0 A;  4C41 A;  8API A;  4P0F A;  1IMV A;  1C8O A;  2H4P A;  2H4Q A;  2V95 A;  1MTP A;  3F02 A;  3ZHA A;  1JJO C;  5CDZ A;  2ZV6 A;  2RIW A;  3VVJ A;  3R4L A;  4PYW A;  1JRR A;  2WXZ A;  4AU2 A;  2WY1 A;  4X30 A;  1JTI A;  2PEF A;  2XN5 A;  4AU4 A;  1XQJ A;  1AZX I;  2OL2 A;  3LE2 A;  2DUT A;  1BR8 I;  4G8R A;  5EI0 A;  4AFX A;  2WXW A;  3DRM A;  1XU8 A;  4ROB A;  4DY0 A;  2PEE A;  2WXX A;  1OC0 A;  3UT3 A;  5INW A;  4CAA A;  5IO1 A;  1PSI A;  1QMN A;  3PZF A;  1OYH L;  3OZQ A;  1QLP A;  9PAI A;  2GD4 C;  2RIV A;  3NDD A;  7API A;  3CAA A;  2ZNH A;  1HLE A;  4P0O A;  4AU3 B;  1D5S A;  1JMO A;  2XN3 A;  1XQG A;  4G8O A;  4DTE A;  1OVA B;  3DRU A;  1DZG I;  1OYH I;  3F1S A;  2ARQ A;  1OPH A;  1T1F A;  2B4X I;  5HGC A;  1KCT A;  2XN7 A;  3CVM A;  5CDX A;  1K9O I;  1E04 I;  3H5C A;  4EB1 I;  2HI9 A;  2VDY A;  2BEH I; 
#chains in the Genus database with same CATH homology
 4Y40 A;  2H4R A;  1C5G A;  2VDX A;  1LQ8 A;  1ATU A;  3EVJ I;  3FGQ A;  4YIA A;  4IC0 A;  1UHG A;  1DZG L;  1ATH A;  2XN6 A;  3CWL A;  2B4X L;  2WXZ C;  3PB1 I;  1SR5 A;  2ACH A;  4R9I A;  3NDA A;  1OVA C;  3LW2 A;  5CE0 A;  1AS4 A;  3Q02 A;  4C49 A;  3EOX A;  1YXA A;  3STO A;  4EB1 L;  1LK6 I;  2BEH L;  2VH4 A;  3CWM A;  2ANT I;  2B5T I;  3T1P A;  2ARR A;  4AJT A;  1QMB A;  1DB2 A;  5C98 A;  4AJU A;  1TB6 I;  2WY0 C;  1ANT I;  3Q03 A;  4RSQ A;  3B9F I;  2R9Y A;  1SEK A;  1SNG A;  1DVM A;  4AQH A;  5BRR I;  1WZ9 A;  1EZX A;  1R1L I;  2CEO A;  2WXY C;  1F0C A;  1DVN A;  1IZ2 A;  2HIJ L;  1HP7 A;  4ROA A;  1LJ5 A;  1DZH I;  4BB2 A;  1B3K A;  1E03 I;  1NQ9 I;  2HIJ I;  4AU3 A;  4GA7 A;  1A7C A;  1OVA A;  4ZK3 A;  9API A;  3F5N A;  1BY7 A;  1JMJ A;  3NDF A;  2D26 A;  4ZK0 A;  3NE4 A;  2OAY A;  4DY7 C;  1E05 I;  1ATT A;  1JVQ I;  2QUG A;  1OO8 A;  3KCG I;  3DLW A;  4Y3K A;  1DZH L;  4RO9 A;  4KDS A;  4IF8 A;  1M93 B;  3DY0 A;  4C41 A;  8API A;  4P0F A;  1IMV A;  1C8O A;  2H4P A;  2H4Q A;  2V95 A;  1MTP A;  3F02 A;  3ZHA A;  1JJO C;  5CDZ A;  2ZV6 A;  2RIW A;  3VVJ A;  3R4L A;  4PYW A;  1JRR A;  2WXZ A;  4AU2 A;  2WY1 A;  4X30 A;  1JTI A;  2PEF A;  2XN5 A;  4AU4 A;  1XQJ A;  1AZX I;  2OL2 A;  3LE2 A;  2DUT A;  1BR8 I;  4G8R A;  5EI0 A;  4AFX A;  2WXW A;  3DRM A;  1XU8 A;  4ROB A;  4DY0 A;  2PEE A;  2WXX A;  1OC0 A;  3UT3 A;  5INW A;  4CAA A;  5IO1 A;  1PSI A;  1QMN A;  3PZF A;  1OYH L;  3OZQ A;  1QLP A;  9PAI A;  2GD4 C;  2RIV A;  3NDD A;  7API A;  3CAA A;  2ZNH A;  1HLE A;  4P0O A;  4AU3 B;  1D5S A;  1JMO A;  2XN3 A;  1XQG A;  4G8O A;  4DTE A;  1OVA B;  3DRU A;  1DZG I;  1OYH I;  3F1S A;  2ARQ A;  1OPH A;  1T1F A;  2B4X I;  5HGC A;  1KCT A;  2XN7 A;  3CVM A;  5CDX A;  1K9O I;  1E04 I;  3H5C A;  4EB1 I;  2HI9 A;  2VDY A;  2BEH I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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