3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
molecule keywords Ovalbumin
molecule tags Hydrolase inhibitor
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
3CWLA 4DY0A 2WXYC 2V95A 2B5TI 5BRRI 4RSQA 1UHGA 2ANTI 4ROAA 1XQJA 3CWMA 7APIA 1BY7A 1IMVA 1OVAB 2D26A 1IZ2A 1YXAA 4C41A 9PAIA 1C8OA 1JTIA 4P0FA 1DZHL 2WY1A 4GA7A 2WY0C 1OVAA 1ATHA 2XN5A 3VVJA 3UT3A 2HIJI 5C98A 2PEFA 3B9FI 4G8OA 2BEHI 4DY7C 1OO8A 4C49A 3H5CA 1ANTI 3Q02A 1QMNA 3ZHAA 2ZNHA 3NDAA 4DTEA 1T1FA 1JVQI 2H4RA 4Y40A 5HGCA 2RIVA 2ARRA 2ACHA 1SEKA 4ZK3A 2OL2A 2ZV6A 1ATTA 3T1PA 4AU3A 2WXWA 3DLWA 2B4XL 1A7CA 4IF8A 1E04I 1TB6I 3F02A 2HIJL 2PEEA 4AU2A 4AJTA 1HLEA 4ZK0A 2BEHL 3EVJI 2WXZC 3EOXA 3NE4A 4AQHA 2WXZA 3STOA 4P0OA 2B4XI 1HP7A 1PSIA 5CDZA 2RIWA 4IC0A 1E03I 3PZFA 3Q03A 1ATUA 4X30A 4AFXA 3DY0A 2VDYA 1OPHA 4CAAA 3R4LA 4RO9A 4Y3KA 2GD4C 3OZQA 1DZGI 1BR8I 1NQ9I 3F5NA 3NDDA 4PYWA 5INWA 4EB1I 1JMOA 1R1LI 2ARQA 3LE2A 4BB2A 1OYHI 1KCTA 1M93B 1JJOC 3KCGI 3CVMA 1XQGA 1B3KA 4AJUA 3FGQA 2OAYA 3DRMA 2CEOA 1SNGA 3PB1I 3NDFA 4G8RA 3CAAA 3F1SA 2VH4A 1EZXA 1LJ5A 1DZGL 4KDSA 9APIA 1XU8A 1SR5A 8APIA 2DUTA 1MTPA 1OC0A 4EB1L 1LQ8A 1LK6I 3LW2A 1OYHL 1DB2A 2H4QA 4AU4A 4ROBA 5EI0A 5CE0A 2R9YA 5CDXA 1F0CA 1DVNA 4R9IA 5IO1A 2XN3A 2XN6A 1K9OI 1WZ9A 2H4PA 2VDXA 1OVAC 2WXXA 1DVMA 1QMBA 1AS4A 1AZXI 1JMJA 1E05I 1D5SA 1JRRA 2HI9A 1C5GA 2XN7A 3DRUA 1DZHI 4YIAA 2QUGA 1QLPA 4AU3B
chains in the Genus database with same CATH superfamily
3CWLA 4DY0A 2WXYC 2V95A 2B5TI 5BRRI 4RSQA 1UHGA 2ANTI 4ROAA 1XQJA 3CWMA 7APIA 1BY7A 1IMVA 1OVAB 2D26A 1IZ2A 1YXAA 4C41A 9PAIA 1C8OA 1JTIA 4P0FA 1DZHL 2WY1A 4GA7A 2WY0C 1OVAA 1ATHA 2XN5A 3VVJA 3UT3A 2HIJI 5C98A 2PEFA 3B9FI 4G8OA 2BEHI 4DY7C 1OO8A 4C49A 3H5CA 1ANTI 3Q02A 1QMNA 3ZHAA 2ZNHA 3NDAA 4DTEA 1T1FA 1JVQI 2H4RA 4Y40A 5HGCA 2RIVA 2ARRA 2ACHA 1SEKA 4ZK3A 2OL2A 2ZV6A 1ATTA 3T1PA 4AU3A 2WXWA 3DLWA 2B4XL 1A7CA 4IF8A 1E04I 1TB6I 3F02A 2HIJL 2PEEA 4AU2A 4AJTA 1HLEA 4ZK0A 2BEHL 3EVJI 2WXZC 3EOXA 3NE4A 4AQHA 2WXZA 3STOA 4P0OA 2B4XI 1HP7A 1PSIA 5CDZA 2RIWA 4IC0A 1E03I 3PZFA 3Q03A 1ATUA 4X30A 4AFXA 3DY0A 2VDYA 1OPHA 4CAAA 3R4LA 4RO9A 4Y3KA 2GD4C 3OZQA 1DZGI 1BR8I 1NQ9I 3F5NA 3NDDA 4PYWA 5INWA 4EB1I 1JMOA 1R1LI 2ARQA 3LE2A 4BB2A 1OYHI 1KCTA 1M93B 1JJOC 3KCGI 3CVMA 1XQGA 1B3KA 4AJUA 3FGQA 2OAYA 3DRMA 2CEOA 1SNGA 3PB1I 3NDFA 4G8RA 3CAAA 3F1SA 2VH4A 1EZXA 1LJ5A 1DZGL 4KDSA 9APIA 1XU8A 1SR5A 8APIA 2DUTA 1MTPA 1OC0A 4EB1L 1LQ8A 1LK6I 3LW2A 1OYHL 1DB2A 2H4QA 4AU4A 4ROBA 5EI0A 5CE0A 2R9YA 5CDXA 1F0CA 1DVNA 4R9IA 5IO1A 2XN3A 2XN6A 1K9OI 1WZ9A 2H4PA 2VDXA 1OVAC 2WXXA 1DVMA 1QMBA 1AS4A 1AZXI 1JMJA 1E05I 1D5SA 1JRRA 2HI9A 1C5GA 2XN7A 3DRUA 1DZHI 4YIAA 2QUGA 1QLPA 4AU3B
chains in the Genus database with same CATH topology
3CWLA 4DY0A 2WXYC 2V95A 2B5TI 5BRRI 4RSQA 1UHGA 2ANTI 4ROAA 1XQJA 3CWMA 7APIA 1BY7A 1IMVA 1OVAB 2D26A 1IZ2A 1YXAA 4C41A 9PAIA 1C8OA 1JTIA 4P0FA 1DZHL 2WY1A 4GA7A 2WY0C 1OVAA 1ATHA 2XN5A 3VVJA 3UT3A 2HIJI 5C98A 2PEFA 3B9FI 4G8OA 2BEHI 4DY7C 1OO8A 4C49A 3H5CA 1ANTI 3Q02A 1QMNA 3ZHAA 2ZNHA 3NDAA 4DTEA 1T1FA 1JVQI 2H4RA 4Y40A 5HGCA 2RIVA 2ARRA 2ACHA 1SEKA 4ZK3A 2OL2A 2ZV6A 1ATTA 3T1PA 4AU3A 2WXWA 3DLWA 2B4XL 1A7CA 4IF8A 1E04I 1TB6I 3F02A 2HIJL 2PEEA 4AU2A 4AJTA 1HLEA 4ZK0A 2BEHL 3EVJI 2WXZC 3EOXA 3NE4A 4AQHA 2WXZA 3STOA 4P0OA 2B4XI 1HP7A 1PSIA 5CDZA 2RIWA 4IC0A 1E03I 3PZFA 3Q03A 1ATUA 4X30A 4AFXA 3DY0A 2VDYA 1OPHA 4CAAA 3R4LA 4RO9A 4Y3KA 2GD4C 3OZQA 1DZGI 1BR8I 1NQ9I 3F5NA 3NDDA 4PYWA 5INWA 4EB1I 1JMOA 1R1LI 2ARQA 3LE2A 4BB2A 1OYHI 1KCTA 1M93B 1JJOC 3KCGI 3CVMA 1XQGA 1B3KA 4AJUA 3FGQA 2OAYA 3DRMA 2CEOA 1SNGA 3PB1I 3NDFA 4G8RA 3CAAA 3F1SA 2VH4A 1EZXA 1LJ5A 1DZGL 4KDSA 9APIA 1XU8A 1SR5A 8APIA 2DUTA 1MTPA 1OC0A 4EB1L 1LQ8A 1LK6I 3LW2A 1OYHL 1DB2A 2H4QA 4AU4A 4ROBA 5EI0A 5CE0A 2R9YA 5CDXA 1F0CA 1DVNA 4R9IA 5IO1A 2XN3A 2XN6A 1K9OI 1WZ9A 2H4PA 2VDXA 1OVAC 2WXXA 1DVMA 1QMBA 1AS4A 1AZXI 1JMJA 1E05I 1D5SA 1JRRA 2HI9A 1C5GA 2XN7A 3DRUA 1DZHI 4YIAA 2QUGA 1QLPA 4AU3B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CWL A;  4DY0 A;  2WXY C;  2V95 A;  2B5T I;  5BRR I;  4RSQ A;  1UHG A;  2ANT I;  4ROA A;  1XQJ A;  3CWM A;  7API A;  1BY7 A;  1IMV A;  1OVA B;  2D26 A;  1IZ2 A;  1YXA A;  4C41 A;  9PAI A;  1C8O A;  1JTI A;  4P0F A;  1DZH L;  2WY1 A;  4GA7 A;  2WY0 C;  1OVA A;  1ATH A;  2XN5 A;  3VVJ A;  3UT3 A;  2HIJ I;  5C98 A;  2PEF A;  3B9F I;  4G8O A;  2BEH I;  4DY7 C;  1OO8 A;  4C49 A;  3H5C A;  1ANT I;  3Q02 A;  1QMN A;  3ZHA A;  2ZNH A;  3NDA A;  4DTE A;  1T1F A;  1JVQ I;  2H4R A;  4Y40 A;  5HGC A;  2RIV A;  2ARR A;  2ACH A;  1SEK A;  4ZK3 A;  2OL2 A;  2ZV6 A;  1ATT A;  3T1P A;  4AU3 A;  2WXW A;  3DLW A;  2B4X L;  1A7C A;  4IF8 A;  1E04 I;  1TB6 I;  3F02 A;  2HIJ L;  2PEE A;  4AU2 A;  4AJT A;  1HLE A;  4ZK0 A;  2BEH L;  3EVJ I;  2WXZ C;  3EOX A;  3NE4 A;  4AQH A;  2WXZ A;  3STO A;  4P0O A;  2B4X I;  1HP7 A;  1PSI A;  5CDZ A;  2RIW A;  4IC0 A;  1E03 I;  3PZF A;  3Q03 A;  1ATU A;  4X30 A;  4AFX A;  3DY0 A;  2VDY A;  1OPH A;  4CAA A;  3R4L A;  4RO9 A;  4Y3K A;  2GD4 C;  3OZQ A;  1DZG I;  1BR8 I;  1NQ9 I;  3F5N A;  3NDD A;  4PYW A;  5INW A;  4EB1 I;  1JMO A;  1R1L I;  2ARQ A;  3LE2 A;  4BB2 A;  1OYH I;  1KCT A;  1M93 B;  1JJO C;  3KCG I;  3CVM A;  1XQG A;  1B3K A;  4AJU A;  3FGQ A;  2OAY A;  3DRM A;  2CEO A;  1SNG A;  3PB1 I;  3NDF A;  4G8R A;  3CAA A;  3F1S A;  2VH4 A;  1EZX A;  1LJ5 A;  1DZG L;  4KDS A;  9API A;  1XU8 A;  1SR5 A;  8API A;  2DUT A;  1MTP A;  1OC0 A;  4EB1 L;  1LQ8 A;  1LK6 I;  3LW2 A;  1OYH L;  1DB2 A;  2H4Q A;  4AU4 A;  4ROB A;  5EI0 A;  5CE0 A;  2R9Y A;  5CDX A;  1F0C A;  1DVN A;  4R9I A;  5IO1 A;  2XN3 A;  2XN6 A;  1K9O I;  1WZ9 A;  2H4P A;  2VDX A;  1OVA C;  2WXX A;  1DVM A;  1QMB A;  1AS4 A;  1AZX I;  1JMJ A;  1E05 I;  1D5S A;  1JRR A;  2HI9 A;  1C5G A;  2XN7 A;  3DRU A;  1DZH I;  4YIA A;  2QUG A;  1QLP A;  4AU3 B; 
#chains in the Genus database with same CATH topology
 3CWL A;  4DY0 A;  2WXY C;  2V95 A;  2B5T I;  5BRR I;  4RSQ A;  1UHG A;  2ANT I;  4ROA A;  1XQJ A;  3CWM A;  7API A;  1BY7 A;  1IMV A;  1OVA B;  2D26 A;  1IZ2 A;  1YXA A;  4C41 A;  9PAI A;  1C8O A;  1JTI A;  4P0F A;  1DZH L;  2WY1 A;  4GA7 A;  2WY0 C;  1OVA A;  1ATH A;  2XN5 A;  3VVJ A;  3UT3 A;  2HIJ I;  5C98 A;  2PEF A;  3B9F I;  4G8O A;  2BEH I;  4DY7 C;  1OO8 A;  4C49 A;  3H5C A;  1ANT I;  3Q02 A;  1QMN A;  3ZHA A;  2ZNH A;  3NDA A;  4DTE A;  1T1F A;  1JVQ I;  2H4R A;  4Y40 A;  5HGC A;  2RIV A;  2ARR A;  2ACH A;  1SEK A;  4ZK3 A;  2OL2 A;  2ZV6 A;  1ATT A;  3T1P A;  4AU3 A;  2WXW A;  3DLW A;  2B4X L;  1A7C A;  4IF8 A;  1E04 I;  1TB6 I;  3F02 A;  2HIJ L;  2PEE A;  4AU2 A;  4AJT A;  1HLE A;  4ZK0 A;  2BEH L;  3EVJ I;  2WXZ C;  3EOX A;  3NE4 A;  4AQH A;  2WXZ A;  3STO A;  4P0O A;  2B4X I;  1HP7 A;  1PSI A;  5CDZ A;  2RIW A;  4IC0 A;  1E03 I;  3PZF A;  3Q03 A;  1ATU A;  4X30 A;  4AFX A;  3DY0 A;  2VDY A;  1OPH A;  4CAA A;  3R4L A;  4RO9 A;  4Y3K A;  2GD4 C;  3OZQ A;  1DZG I;  1BR8 I;  1NQ9 I;  3F5N A;  3NDD A;  4PYW A;  5INW A;  4EB1 I;  1JMO A;  1R1L I;  2ARQ A;  3LE2 A;  4BB2 A;  1OYH I;  1KCT A;  1M93 B;  1JJO C;  3KCG I;  3CVM A;  1XQG A;  1B3K A;  4AJU A;  3FGQ A;  2OAY A;  3DRM A;  2CEO A;  1SNG A;  3PB1 I;  3NDF A;  4G8R A;  3CAA A;  3F1S A;  2VH4 A;  1EZX A;  1LJ5 A;  1DZG L;  4KDS A;  9API A;  1XU8 A;  1SR5 A;  8API A;  2DUT A;  1MTP A;  1OC0 A;  4EB1 L;  1LQ8 A;  1LK6 I;  3LW2 A;  1OYH L;  1DB2 A;  2H4Q A;  4AU4 A;  4ROB A;  5EI0 A;  5CE0 A;  2R9Y A;  5CDX A;  1F0C A;  1DVN A;  4R9I A;  5IO1 A;  2XN3 A;  2XN6 A;  1K9O I;  1WZ9 A;  2H4P A;  2VDX A;  1OVA C;  2WXX A;  1DVM A;  1QMB A;  1AS4 A;  1AZX I;  1JMJ A;  1E05 I;  1D5S A;  1JRR A;  2HI9 A;  1C5G A;  2XN7 A;  3DRU A;  1DZH I;  4YIA A;  2QUG A;  1QLP A;  4AU3 B; 
#chains in the Genus database with same CATH homology
 3CWL A;  4DY0 A;  2WXY C;  2V95 A;  2B5T I;  5BRR I;  4RSQ A;  1UHG A;  2ANT I;  4ROA A;  1XQJ A;  3CWM A;  7API A;  1BY7 A;  1IMV A;  1OVA B;  2D26 A;  1IZ2 A;  1YXA A;  4C41 A;  9PAI A;  1C8O A;  1JTI A;  4P0F A;  1DZH L;  2WY1 A;  4GA7 A;  2WY0 C;  1OVA A;  1ATH A;  2XN5 A;  3VVJ A;  3UT3 A;  2HIJ I;  5C98 A;  2PEF A;  3B9F I;  4G8O A;  2BEH I;  4DY7 C;  1OO8 A;  4C49 A;  3H5C A;  1ANT I;  3Q02 A;  1QMN A;  3ZHA A;  2ZNH A;  3NDA A;  4DTE A;  1T1F A;  1JVQ I;  2H4R A;  4Y40 A;  5HGC A;  2RIV A;  2ARR A;  2ACH A;  1SEK A;  4ZK3 A;  2OL2 A;  2ZV6 A;  1ATT A;  3T1P A;  4AU3 A;  2WXW A;  3DLW A;  2B4X L;  1A7C A;  4IF8 A;  1E04 I;  1TB6 I;  3F02 A;  2HIJ L;  2PEE A;  4AU2 A;  4AJT A;  1HLE A;  4ZK0 A;  2BEH L;  3EVJ I;  2WXZ C;  3EOX A;  3NE4 A;  4AQH A;  2WXZ A;  3STO A;  4P0O A;  2B4X I;  1HP7 A;  1PSI A;  5CDZ A;  2RIW A;  4IC0 A;  1E03 I;  3PZF A;  3Q03 A;  1ATU A;  4X30 A;  4AFX A;  3DY0 A;  2VDY A;  1OPH A;  4CAA A;  3R4L A;  4RO9 A;  4Y3K A;  2GD4 C;  3OZQ A;  1DZG I;  1BR8 I;  1NQ9 I;  3F5N A;  3NDD A;  4PYW A;  5INW A;  4EB1 I;  1JMO A;  1R1L I;  2ARQ A;  3LE2 A;  4BB2 A;  1OYH I;  1KCT A;  1M93 B;  1JJO C;  3KCG I;  3CVM A;  1XQG A;  1B3K A;  4AJU A;  3FGQ A;  2OAY A;  3DRM A;  2CEO A;  1SNG A;  3PB1 I;  3NDF A;  4G8R A;  3CAA A;  3F1S A;  2VH4 A;  1EZX A;  1LJ5 A;  1DZG L;  4KDS A;  9API A;  1XU8 A;  1SR5 A;  8API A;  2DUT A;  1MTP A;  1OC0 A;  4EB1 L;  1LQ8 A;  1LK6 I;  3LW2 A;  1OYH L;  1DB2 A;  2H4Q A;  4AU4 A;  4ROB A;  5EI0 A;  5CE0 A;  2R9Y A;  5CDX A;  1F0C A;  1DVN A;  4R9I A;  5IO1 A;  2XN3 A;  2XN6 A;  1K9O I;  1WZ9 A;  2H4P A;  2VDX A;  1OVA C;  2WXX A;  1DVM A;  1QMB A;  1AS4 A;  1AZX I;  1JMJ A;  1E05 I;  1D5S A;  1JRR A;  2HI9 A;  1C5G A;  2XN7 A;  3DRU A;  1DZH I;  4YIA A;  2QUG A;  1QLP A;  4AU3 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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