3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase inhibitor
molecule keywords Ovalbumin
publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
1OC0A 1LQ8A 2VH4A 4C49A 1DZHL 1JRRA 3B9FI 1JMJA 3VVJA 2WXXA 1AS4A 1DB2A 4IF8A 8APIA 4Y3KA 2HIJI 1DZGI 1K9OI 3DRMA 3Q02A 3DLWA 2B5TI 2WY0C 2HIJL 1DZGL 1F0CA 1OYHI 2XN6A 3EVJI 5IO1A 1OPHA 2R9YA 1OYHL 3CWLA 1UHGA 2OL2A 2ZV6A 3UT3A 3CWMA 2ZNHA 3F02A 4AFXA 2V95A 1A7CA 1OVAC 1QMBA 4KDSA 1YXAA 1LJ5A 1ANTI 2QUGA 3LE2A 1E03I 2GD4C 1AZXI 1M93B 2H4QA 4ZK0A 2BEHI 2XN7A 2B4XI 3STOA 5HGCA 2WXWA 4P0OA 1LK6I 1OVAA 2ANTI 2H4RA 2H4PA 4DY0A 2VDXA 1JTIA 1SEKA 4PYWA 2BEHL 2B4XL 2VDYA 5INWA 3NDFA 3T1PA 3H5CA 1JMOA 2WY1A 5C98A 2XN5A 5BRRI 1QLPA 3KCGI 4BB2A 3Q03A 2XN3A 2DUTA 4DY7C 4AJTA 4C41A 3PZFA 2WXYC 1IZ2A 4RSQA 1HLEA 4EB1L 1DVNA 4ROAA 1JJOC 2WXZC 1PSIA 1D5SA 3DY0A 4G8RA 1DVMA 1T1FA 1BR8I 3EOXA 2ARQA 1C5GA 3NDDA 1SNGA 4YIAA 7APIA 4AU2A 1BY7A 3CVMA 1ATHA 3LW2A 4P0FA 4AJUA 4AU3A 9APIA 2PEEA 1OVAB 1R1LI 4CAAA 2WXZA 1NQ9I 2HI9A 2ACHA 3CAAA 4IC0A 2ARRA 5CDZA 4R9IA 1QMNA 1OO8A 1E04I 3NDAA 1B3KA 1C8OA 1XQGA 3PB1I 4EB1I 1EZXA 2RIWA 4RO9A 3R4LA 1ATUA 4G8OA 5CE0A 1IMVA 2PEFA 4Y40A 9PAIA 2RIVA 1KCTA 1WZ9A 3FGQA 4ROBA 5CDXA 4AU3B 3F5NA 2CEOA 5EI0A 1SR5A 3NE4A 4AQHA 4ZK3A 1TB6I 1E05I 1MTPA 4GA7A 3DRUA 2OAYA 1XU8A 3OZQA 4X30A 3ZHAA 1HP7A 4DTEA 1DZHI 2D26A 1JVQI 1XQJA 1ATTA 3F1SA 4AU4A
chains in the Genus database with same CATH superfamily
1OC0A 1LQ8A 2VH4A 4C49A 1DZHL 1JRRA 3B9FI 1JMJA 3VVJA 2WXXA 1AS4A 1DB2A 4IF8A 8APIA 4Y3KA 2HIJI 1DZGI 1K9OI 3DRMA 3Q02A 3DLWA 2B5TI 2WY0C 2HIJL 1DZGL 1F0CA 1OYHI 2XN6A 3EVJI 5IO1A 1OPHA 2R9YA 1OYHL 3CWLA 1UHGA 2OL2A 2ZV6A 3UT3A 3CWMA 2ZNHA 3F02A 4AFXA 2V95A 1A7CA 1OVAC 1QMBA 4KDSA 1YXAA 1LJ5A 1ANTI 2QUGA 3LE2A 1E03I 2GD4C 1AZXI 1M93B 2H4QA 4ZK0A 2BEHI 2XN7A 2B4XI 3STOA 5HGCA 2WXWA 4P0OA 1LK6I 1OVAA 2ANTI 2H4RA 2H4PA 4DY0A 2VDXA 1JTIA 1SEKA 4PYWA 2BEHL 2B4XL 2VDYA 5INWA 3NDFA 3T1PA 3H5CA 1JMOA 2WY1A 5C98A 2XN5A 5BRRI 1QLPA 3KCGI 4BB2A 3Q03A 2XN3A 2DUTA 4DY7C 4AJTA 4C41A 3PZFA 2WXYC 1IZ2A 4RSQA 1HLEA 4EB1L 1DVNA 4ROAA 1JJOC 2WXZC 1PSIA 1D5SA 3DY0A 4G8RA 1DVMA 1T1FA 1BR8I 3EOXA 2ARQA 1C5GA 3NDDA 1SNGA 4YIAA 7APIA 4AU2A 1BY7A 3CVMA 1ATHA 3LW2A 4P0FA 4AJUA 4AU3A 9APIA 2PEEA 1OVAB 1R1LI 4CAAA 2WXZA 1NQ9I 2HI9A 2ACHA 3CAAA 4IC0A 2ARRA 5CDZA 4R9IA 1QMNA 1OO8A 1E04I 3NDAA 1B3KA 1C8OA 1XQGA 3PB1I 4EB1I 1EZXA 2RIWA 4RO9A 3R4LA 1ATUA 4G8OA 5CE0A 1IMVA 2PEFA 4Y40A 9PAIA 2RIVA 1KCTA 1WZ9A 3FGQA 4ROBA 5CDXA 4AU3B 3F5NA 2CEOA 5EI0A 1SR5A 3NE4A 4AQHA 4ZK3A 1TB6I 1E05I 1MTPA 4GA7A 3DRUA 2OAYA 1XU8A 3OZQA 4X30A 3ZHAA 1HP7A 4DTEA 1DZHI 2D26A 1JVQI 1XQJA 1ATTA 3F1SA 4AU4A
chains in the Genus database with same CATH topology
1OC0A 1LQ8A 2VH4A 4C49A 1DZHL 1JRRA 3B9FI 1JMJA 3VVJA 2WXXA 1AS4A 1DB2A 4IF8A 8APIA 4Y3KA 2HIJI 1DZGI 1K9OI 3DRMA 3Q02A 3DLWA 2B5TI 2WY0C 2HIJL 1DZGL 1F0CA 1OYHI 2XN6A 3EVJI 5IO1A 1OPHA 2R9YA 1OYHL 3CWLA 1UHGA 2OL2A 2ZV6A 3UT3A 3CWMA 2ZNHA 3F02A 4AFXA 2V95A 1A7CA 1OVAC 1QMBA 4KDSA 1YXAA 1LJ5A 1ANTI 2QUGA 3LE2A 1E03I 2GD4C 1AZXI 1M93B 2H4QA 4ZK0A 2BEHI 2XN7A 2B4XI 3STOA 5HGCA 2WXWA 4P0OA 1LK6I 1OVAA 2ANTI 2H4RA 2H4PA 4DY0A 2VDXA 1JTIA 1SEKA 4PYWA 2BEHL 2B4XL 2VDYA 5INWA 3NDFA 3T1PA 3H5CA 1JMOA 2WY1A 5C98A 2XN5A 5BRRI 1QLPA 3KCGI 4BB2A 3Q03A 2XN3A 2DUTA 4DY7C 4AJTA 4C41A 3PZFA 2WXYC 1IZ2A 4RSQA 1HLEA 4EB1L 1DVNA 4ROAA 1JJOC 2WXZC 1PSIA 1D5SA 3DY0A 4G8RA 1DVMA 1T1FA 1BR8I 3EOXA 2ARQA 1C5GA 3NDDA 1SNGA 4YIAA 7APIA 4AU2A 1BY7A 3CVMA 1ATHA 3LW2A 4P0FA 4AJUA 4AU3A 9APIA 2PEEA 1OVAB 1R1LI 4CAAA 2WXZA 1NQ9I 2HI9A 2ACHA 3CAAA 4IC0A 2ARRA 5CDZA 4R9IA 1QMNA 1OO8A 1E04I 3NDAA 1B3KA 1C8OA 1XQGA 3PB1I 4EB1I 1EZXA 2RIWA 4RO9A 3R4LA 1ATUA 4G8OA 5CE0A 1IMVA 2PEFA 4Y40A 9PAIA 2RIVA 1KCTA 1WZ9A 3FGQA 4ROBA 5CDXA 4AU3B 3F5NA 2CEOA 5EI0A 1SR5A 3NE4A 4AQHA 4ZK3A 1TB6I 1E05I 1MTPA 4GA7A 3DRUA 2OAYA 1XU8A 3OZQA 4X30A 3ZHAA 1HP7A 4DTEA 1DZHI 2D26A 1JVQI 1XQJA 1ATTA 3F1SA 4AU4A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1OC0 A;  1LQ8 A;  2VH4 A;  4C49 A;  1DZH L;  1JRR A;  3B9F I;  1JMJ A;  3VVJ A;  2WXX A;  1AS4 A;  1DB2 A;  4IF8 A;  8API A;  4Y3K A;  2HIJ I;  1DZG I;  1K9O I;  3DRM A;  3Q02 A;  3DLW A;  2B5T I;  2WY0 C;  2HIJ L;  1DZG L;  1F0C A;  1OYH I;  2XN6 A;  3EVJ I;  5IO1 A;  1OPH A;  2R9Y A;  1OYH L;  3CWL A;  1UHG A;  2OL2 A;  2ZV6 A;  3UT3 A;  3CWM A;  2ZNH A;  3F02 A;  4AFX A;  2V95 A;  1A7C A;  1OVA C;  1QMB A;  4KDS A;  1YXA A;  1LJ5 A;  1ANT I;  2QUG A;  3LE2 A;  1E03 I;  2GD4 C;  1AZX I;  1M93 B;  2H4Q A;  4ZK0 A;  2BEH I;  2XN7 A;  2B4X I;  3STO A;  5HGC A;  2WXW A;  4P0O A;  1LK6 I;  1OVA A;  2ANT I;  2H4R A;  2H4P A;  4DY0 A;  2VDX A;  1JTI A;  1SEK A;  4PYW A;  2BEH L;  2B4X L;  2VDY A;  5INW A;  3NDF A;  3T1P A;  3H5C A;  1JMO A;  2WY1 A;  5C98 A;  2XN5 A;  5BRR I;  1QLP A;  3KCG I;  4BB2 A;  3Q03 A;  2XN3 A;  2DUT A;  4DY7 C;  4AJT A;  4C41 A;  3PZF A;  2WXY C;  1IZ2 A;  4RSQ A;  1HLE A;  4EB1 L;  1DVN A;  4ROA A;  1JJO C;  2WXZ C;  1PSI A;  1D5S A;  3DY0 A;  4G8R A;  1DVM A;  1T1F A;  1BR8 I;  3EOX A;  2ARQ A;  1C5G A;  3NDD A;  1SNG A;  4YIA A;  7API A;  4AU2 A;  1BY7 A;  3CVM A;  1ATH A;  3LW2 A;  4P0F A;  4AJU A;  4AU3 A;  9API A;  2PEE A;  1OVA B;  1R1L I;  4CAA A;  2WXZ A;  1NQ9 I;  2HI9 A;  2ACH A;  3CAA A;  4IC0 A;  2ARR A;  5CDZ A;  4R9I A;  1QMN A;  1OO8 A;  1E04 I;  3NDA A;  1B3K A;  1C8O A;  1XQG A;  3PB1 I;  4EB1 I;  1EZX A;  2RIW A;  4RO9 A;  3R4L A;  1ATU A;  4G8O A;  5CE0 A;  1IMV A;  2PEF A;  4Y40 A;  9PAI A;  2RIV A;  1KCT A;  1WZ9 A;  3FGQ A;  4ROB A;  5CDX A;  4AU3 B;  3F5N A;  2CEO A;  5EI0 A;  1SR5 A;  3NE4 A;  4AQH A;  4ZK3 A;  1TB6 I;  1E05 I;  1MTP A;  4GA7 A;  3DRU A;  2OAY A;  1XU8 A;  3OZQ A;  4X30 A;  3ZHA A;  1HP7 A;  4DTE A;  1DZH I;  2D26 A;  1JVQ I;  1XQJ A;  1ATT A;  3F1S A;  4AU4 A; 
#chains in the Genus database with same CATH topology
 1OC0 A;  1LQ8 A;  2VH4 A;  4C49 A;  1DZH L;  1JRR A;  3B9F I;  1JMJ A;  3VVJ A;  2WXX A;  1AS4 A;  1DB2 A;  4IF8 A;  8API A;  4Y3K A;  2HIJ I;  1DZG I;  1K9O I;  3DRM A;  3Q02 A;  3DLW A;  2B5T I;  2WY0 C;  2HIJ L;  1DZG L;  1F0C A;  1OYH I;  2XN6 A;  3EVJ I;  5IO1 A;  1OPH A;  2R9Y A;  1OYH L;  3CWL A;  1UHG A;  2OL2 A;  2ZV6 A;  3UT3 A;  3CWM A;  2ZNH A;  3F02 A;  4AFX A;  2V95 A;  1A7C A;  1OVA C;  1QMB A;  4KDS A;  1YXA A;  1LJ5 A;  1ANT I;  2QUG A;  3LE2 A;  1E03 I;  2GD4 C;  1AZX I;  1M93 B;  2H4Q A;  4ZK0 A;  2BEH I;  2XN7 A;  2B4X I;  3STO A;  5HGC A;  2WXW A;  4P0O A;  1LK6 I;  1OVA A;  2ANT I;  2H4R A;  2H4P A;  4DY0 A;  2VDX A;  1JTI A;  1SEK A;  4PYW A;  2BEH L;  2B4X L;  2VDY A;  5INW A;  3NDF A;  3T1P A;  3H5C A;  1JMO A;  2WY1 A;  5C98 A;  2XN5 A;  5BRR I;  1QLP A;  3KCG I;  4BB2 A;  3Q03 A;  2XN3 A;  2DUT A;  4DY7 C;  4AJT A;  4C41 A;  3PZF A;  2WXY C;  1IZ2 A;  4RSQ A;  1HLE A;  4EB1 L;  1DVN A;  4ROA A;  1JJO C;  2WXZ C;  1PSI A;  1D5S A;  3DY0 A;  4G8R A;  1DVM A;  1T1F A;  1BR8 I;  3EOX A;  2ARQ A;  1C5G A;  3NDD A;  1SNG A;  4YIA A;  7API A;  4AU2 A;  1BY7 A;  3CVM A;  1ATH A;  3LW2 A;  4P0F A;  4AJU A;  4AU3 A;  9API A;  2PEE A;  1OVA B;  1R1L I;  4CAA A;  2WXZ A;  1NQ9 I;  2HI9 A;  2ACH A;  3CAA A;  4IC0 A;  2ARR A;  5CDZ A;  4R9I A;  1QMN A;  1OO8 A;  1E04 I;  3NDA A;  1B3K A;  1C8O A;  1XQG A;  3PB1 I;  4EB1 I;  1EZX A;  2RIW A;  4RO9 A;  3R4L A;  1ATU A;  4G8O A;  5CE0 A;  1IMV A;  2PEF A;  4Y40 A;  9PAI A;  2RIV A;  1KCT A;  1WZ9 A;  3FGQ A;  4ROB A;  5CDX A;  4AU3 B;  3F5N A;  2CEO A;  5EI0 A;  1SR5 A;  3NE4 A;  4AQH A;  4ZK3 A;  1TB6 I;  1E05 I;  1MTP A;  4GA7 A;  3DRU A;  2OAY A;  1XU8 A;  3OZQ A;  4X30 A;  3ZHA A;  1HP7 A;  4DTE A;  1DZH I;  2D26 A;  1JVQ I;  1XQJ A;  1ATT A;  3F1S A;  4AU4 A; 
#chains in the Genus database with same CATH homology
 1OC0 A;  1LQ8 A;  2VH4 A;  4C49 A;  1DZH L;  1JRR A;  3B9F I;  1JMJ A;  3VVJ A;  2WXX A;  1AS4 A;  1DB2 A;  4IF8 A;  8API A;  4Y3K A;  2HIJ I;  1DZG I;  1K9O I;  3DRM A;  3Q02 A;  3DLW A;  2B5T I;  2WY0 C;  2HIJ L;  1DZG L;  1F0C A;  1OYH I;  2XN6 A;  3EVJ I;  5IO1 A;  1OPH A;  2R9Y A;  1OYH L;  3CWL A;  1UHG A;  2OL2 A;  2ZV6 A;  3UT3 A;  3CWM A;  2ZNH A;  3F02 A;  4AFX A;  2V95 A;  1A7C A;  1OVA C;  1QMB A;  4KDS A;  1YXA A;  1LJ5 A;  1ANT I;  2QUG A;  3LE2 A;  1E03 I;  2GD4 C;  1AZX I;  1M93 B;  2H4Q A;  4ZK0 A;  2BEH I;  2XN7 A;  2B4X I;  3STO A;  5HGC A;  2WXW A;  4P0O A;  1LK6 I;  1OVA A;  2ANT I;  2H4R A;  2H4P A;  4DY0 A;  2VDX A;  1JTI A;  1SEK A;  4PYW A;  2BEH L;  2B4X L;  2VDY A;  5INW A;  3NDF A;  3T1P A;  3H5C A;  1JMO A;  2WY1 A;  5C98 A;  2XN5 A;  5BRR I;  1QLP A;  3KCG I;  4BB2 A;  3Q03 A;  2XN3 A;  2DUT A;  4DY7 C;  4AJT A;  4C41 A;  3PZF A;  2WXY C;  1IZ2 A;  4RSQ A;  1HLE A;  4EB1 L;  1DVN A;  4ROA A;  1JJO C;  2WXZ C;  1PSI A;  1D5S A;  3DY0 A;  4G8R A;  1DVM A;  1T1F A;  1BR8 I;  3EOX A;  2ARQ A;  1C5G A;  3NDD A;  1SNG A;  4YIA A;  7API A;  4AU2 A;  1BY7 A;  3CVM A;  1ATH A;  3LW2 A;  4P0F A;  4AJU A;  4AU3 A;  9API A;  2PEE A;  1OVA B;  1R1L I;  4CAA A;  2WXZ A;  1NQ9 I;  2HI9 A;  2ACH A;  3CAA A;  4IC0 A;  2ARR A;  5CDZ A;  4R9I A;  1QMN A;  1OO8 A;  1E04 I;  3NDA A;  1B3K A;  1C8O A;  1XQG A;  3PB1 I;  4EB1 I;  1EZX A;  2RIW A;  4RO9 A;  3R4L A;  1ATU A;  4G8O A;  5CE0 A;  1IMV A;  2PEF A;  4Y40 A;  9PAI A;  2RIV A;  1KCT A;  1WZ9 A;  3FGQ A;  4ROB A;  5CDX A;  4AU3 B;  3F5N A;  2CEO A;  5EI0 A;  1SR5 A;  3NE4 A;  4AQH A;  4ZK3 A;  1TB6 I;  1E05 I;  1MTP A;  4GA7 A;  3DRU A;  2OAY A;  1XU8 A;  3OZQ A;  4X30 A;  3ZHA A;  1HP7 A;  4DTE A;  1DZH I;  2D26 A;  1JVQ I;  1XQJ A;  1ATT A;  3F1S A;  4AU4 A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite