4AU3A

Crystal structure of a hsp47-collagen complex
Total Genus 112

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
380
structure length
367
Chain Sequence
MLSPKAATLAERSAGLAFSLYQAMAKDQAVENILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEVHAGLGELLRSLSNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIILMPHHVEPLERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADLSRMSGKKDLYLASVFHATAFEWDTEGNPFDLRSPKLFYADHPFIFLVRDTQSGSLLFIGRLVRPKGDKM
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS10 (298-305)AH1 (38-57)S3 (157-161)AH7 (278-284)TI1 (61-64)AH2 (71-84)AH4 (104-118)AH3 (87-97)TI2 (99-102)S2 (128-137)TIV1 (126-129)AH5 (144-154)TIV2 (137-140)TIV5 (263-266)S9 (265-270)TI3 (162-165)S11 (309-316)AH6 (166-181)TVIII4 (210-213)TIV6 (323-326)TIV3 (194-197)TVIII3 (192-195)TI5 (249-252)TIV4 (248-251)S4 (198-206)AH9 (317-323)S5 (222-227)TI7 (327-330)TI6 (326-329)S6 (230-234)TI4 (227-230)S8 (253-257)3H1 (261-263)S12 (348-359)TI8 (328-331)TI9 (331-334)TIV8 (338-342)TIV7 (337-341)AH8 (287-293)S1 (67-69)TI'1 (181-184)TVIII2 (183-186)S7 (239-248)TI10 (332-335)Updating...
connected with : NaN
molecule tags Chaperone/peptide
source organism Canis lupus familiaris
publication title Molecular Basis for the Action of the Collagen-Specific Chaperone Hsp47/Serpinh1 and its Structure-Specific Client Recognition.
pubmed doi rcsb
molecule keywords SERPIN PEPTIDASE INHIBITOR, CLADE H (HEAT SHOCK PROTEIN 47 )
total genus 112
structure length 367
sequence length 380
chains with identical sequence C, D
ec nomenclature
pdb deposition date 2012-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 4au3A02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 4au3A01
1B3KA 1ATHA 2WXZC 1LK6I 1JMJA 2R9YA 3DRUA 1KCTA 3H5CA 4AQHA 2OAYA 4DY7C 4AU4A 1QMBA 1OYHL 3CWLA 1LQ8A 1M93B 3R4LA 2GD4C 9APIA 5INWA 5IO1A 1E05I 2D26A 3LW2A 3T1PA 2HIJL 1DVNA 1SR5A 2BEHL 1HLEA 4ROBA 5CDZA 3NDDA 3UT3A 2WY0C 4AJUA 2WXWA 4G8OA 1SEKA 2ZV6A 4P0OA 4EB1L 5EI0A 1E03I 3NDAA 3NE4A 1OC0A 1JVQI 3DY0A 3F02A 4KDSA 1DZGL 3FGQA 1PSIA 4DY0A 1OVAA 1OYHI 1DZHL 2WY1A 4AJTA 1HP7A 2H4QA 1T1FA 4RO9A 7APIA 3F1SA 1A7CA 2H4PA 3NDFA 3VVJA 1BR8I 2PEFA 1XQGA 2ZNHA 1XU8A 5CE0A 4C41A 4R9IA 4IF8A 2OL2A 4ZK0A 2ANTI 1TB6I 2B5TI 2RIWA 2VDXA 3PB1I 1F0CA 1E04I 3B9FI 9PAIA 3OZQA 4AFXA 1JTIA 4P0FA 4DTEA 4X30A 1YXAA 4GA7A 2B4XL 4RSQA 4CAAA 2PEEA 1JJOC 3DRMA 2VH4A 1QLPA 3EOXA 3EVJI 4C49A 1OPHA 4YIAA 1MTPA 2XN6A 4AU3B 1XQJA 1C5GA 2XN5A 4AU2A 2ACHA 1DB2A 3Q03A 3STOA 1D5SA 4BB2A 2HIJI 1OVAC 2BEHI 2CEOA 4Y40A 3ZHAA 3LE2A 1ATUA 2HI9A 1DVMA 3Q02A 3F5NA 1C8OA 2WXZA 4EB1I 1IZ2A 2ARRA 2XN3A 3CAAA 3PZFA 1ATTA 1NQ9I 1WZ9A 2WXYC 1DZGI 2RIVA 1JMOA 1SNGA 3CWMA 3DLWA 4PYWA 1DZHI 4Y3KA 5BRRI 1JRRA 4G8RA 1UHGA 2QUGA 5HGCA 1LJ5A 1R1LI 3KCGI 1AS4A 2DUTA 5CDXA 1QMNA 2ARQA 2H4RA 4IC0A 2WXXA 1OVAB 3CVMA 1BY7A 8APIA 1AZXI 4ZK3A 1K9OI 4AU3A 1OO8A 2XN7A 2VDYA 1IMVA 2B4XI 4ROAA 2V95A 5C98A 1EZXA 1ANTI
chains in the Genus database with same CATH superfamily
1B3KA 1ATHA 2WXZC 1LK6I 1JMJA 2R9YA 3DRUA 1KCTA 3H5CA 4AQHA 2OAYA 4DY7C 4AU4A 1QMBA 1OYHL 3CWLA 1LQ8A 1M93B 3R4LA 2GD4C 9APIA 5INWA 5IO1A 1E05I 2D26A 3LW2A 3T1PA 2HIJL 1DVNA 1SR5A 2BEHL 1HLEA 4ROBA 5CDZA 3NDDA 3UT3A 2WY0C 4AJUA 2WXWA 4G8OA 1SEKA 2ZV6A 4P0OA 4EB1L 5EI0A 1E03I 3NDAA 3NE4A 1OC0A 1JVQI 3DY0A 3F02A 4KDSA 1DZGL 3FGQA 1PSIA 4DY0A 1OVAA 1OYHI 1DZHL 2WY1A 4AJTA 1HP7A 2H4QA 1T1FA 4RO9A 7APIA 3F1SA 1A7CA 2H4PA 3NDFA 3VVJA 1BR8I 2PEFA 1XQGA 2ZNHA 1XU8A 5CE0A 4C41A 4R9IA 4IF8A 2OL2A 4ZK0A 2ANTI 1TB6I 2B5TI 2RIWA 2VDXA 3PB1I 1F0CA 1E04I 3B9FI 9PAIA 3OZQA 4AFXA 1JTIA 4P0FA 4DTEA 4X30A 1YXAA 4GA7A 2B4XL 4RSQA 4CAAA 2PEEA 1JJOC 3DRMA 2VH4A 1QLPA 3EOXA 3EVJI 4C49A 1OPHA 4YIAA 1MTPA 2XN6A 4AU3B 1XQJA 1C5GA 2XN5A 4AU2A 2ACHA 1DB2A 3Q03A 3STOA 1D5SA 4BB2A 2HIJI 1OVAC 2BEHI 2CEOA 4Y40A 3ZHAA 3LE2A 1ATUA 2HI9A 1DVMA 3Q02A 3F5NA 1C8OA 2WXZA 4EB1I 1IZ2A 2ARRA 2XN3A 3CAAA 3PZFA 1ATTA 1NQ9I 1WZ9A 2WXYC 1DZGI 2RIVA 1JMOA 1SNGA 3CWMA 3DLWA 4PYWA 1DZHI 4Y3KA 5BRRI 1JRRA 4G8RA 1UHGA 2QUGA 5HGCA 1LJ5A 1R1LI 3KCGI 1AS4A 2DUTA 5CDXA 1QMNA 2ARQA 2H4RA 4IC0A 2WXXA 1OVAB 3CVMA 1BY7A 8APIA 1AZXI 4ZK3A 1K9OI 4AU3A 1OO8A 2XN7A 2VDYA 1IMVA 2B4XI 4ROAA 2V95A 5C98A 1EZXA 1ANTI
chains in the Genus database with same CATH topology
1B3KA 1ATHA 2WXZC 1LK6I 1JMJA 2R9YA 3DRUA 1KCTA 3H5CA 4AQHA 2OAYA 4DY7C 4AU4A 1QMBA 1OYHL 3CWLA 1LQ8A 1M93B 3R4LA 2GD4C 9APIA 5INWA 5IO1A 1E05I 2D26A 3LW2A 3T1PA 2HIJL 1DVNA 1SR5A 2BEHL 1HLEA 4ROBA 5CDZA 3NDDA 3UT3A 2WY0C 4AJUA 2WXWA 4G8OA 1SEKA 2ZV6A 4P0OA 4EB1L 5EI0A 1E03I 3NDAA 3NE4A 1OC0A 1JVQI 3DY0A 3F02A 4KDSA 1DZGL 3FGQA 1PSIA 4DY0A 1OVAA 1OYHI 1DZHL 2WY1A 4AJTA 1HP7A 2H4QA 1T1FA 4RO9A 7APIA 3F1SA 1A7CA 2H4PA 3NDFA 3VVJA 1BR8I 2PEFA 1XQGA 2ZNHA 1XU8A 5CE0A 4C41A 4R9IA 4IF8A 2OL2A 4ZK0A 2ANTI 1TB6I 2B5TI 2RIWA 2VDXA 3PB1I 1F0CA 1E04I 3B9FI 9PAIA 3OZQA 4AFXA 1JTIA 4P0FA 4DTEA 4X30A 1YXAA 4GA7A 2B4XL 4RSQA 4CAAA 2PEEA 1JJOC 3DRMA 2VH4A 1QLPA 3EOXA 3EVJI 4C49A 1OPHA 4YIAA 1MTPA 2XN6A 4AU3B 1XQJA 1C5GA 2XN5A 4AU2A 2ACHA 1DB2A 3Q03A 3STOA 1D5SA 4BB2A 2HIJI 1OVAC 2BEHI 2CEOA 4Y40A 3ZHAA 3LE2A 1ATUA 2HI9A 1DVMA 3Q02A 3F5NA 1C8OA 2WXZA 4EB1I 1IZ2A 2ARRA 2XN3A 3CAAA 3PZFA 1ATTA 1NQ9I 1WZ9A 2WXYC 1DZGI 2RIVA 1JMOA 1SNGA 3CWMA 3DLWA 4PYWA 1DZHI 4Y3KA 5BRRI 1JRRA 4G8RA 1UHGA 2QUGA 5HGCA 1LJ5A 1R1LI 3KCGI 1AS4A 2DUTA 5CDXA 1QMNA 2ARQA 2H4RA 4IC0A 2WXXA 1OVAB 3CVMA 1BY7A 8APIA 1AZXI 4ZK3A 1K9OI 4AU3A 1OO8A 2XN7A 2VDYA 1IMVA 2B4XI 4ROAA 2V95A 5C98A 1EZXA 1ANTI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B3K A;  1ATH A;  2WXZ C;  1LK6 I;  1JMJ A;  2R9Y A;  3DRU A;  1KCT A;  3H5C A;  4AQH A;  2OAY A;  4DY7 C;  4AU4 A;  1QMB A;  1OYH L;  3CWL A;  1LQ8 A;  1M93 B;  3R4L A;  2GD4 C;  9API A;  5INW A;  5IO1 A;  1E05 I;  2D26 A;  3LW2 A;  3T1P A;  2HIJ L;  1DVN A;  1SR5 A;  2BEH L;  1HLE A;  4ROB A;  5CDZ A;  3NDD A;  3UT3 A;  2WY0 C;  4AJU A;  2WXW A;  4G8O A;  1SEK A;  2ZV6 A;  4P0O A;  4EB1 L;  5EI0 A;  1E03 I;  3NDA A;  3NE4 A;  1OC0 A;  1JVQ I;  3DY0 A;  3F02 A;  4KDS A;  1DZG L;  3FGQ A;  1PSI A;  4DY0 A;  1OVA A;  1OYH I;  1DZH L;  2WY1 A;  4AJT A;  1HP7 A;  2H4Q A;  1T1F A;  4RO9 A;  7API A;  3F1S A;  1A7C A;  2H4P A;  3NDF A;  3VVJ A;  1BR8 I;  2PEF A;  1XQG A;  2ZNH A;  1XU8 A;  5CE0 A;  4C41 A;  4R9I A;  4IF8 A;  2OL2 A;  4ZK0 A;  2ANT I;  1TB6 I;  2B5T I;  2RIW A;  2VDX A;  3PB1 I;  1F0C A;  1E04 I;  3B9F I;  9PAI A;  3OZQ A;  4AFX A;  1JTI A;  4P0F A;  4DTE A;  4X30 A;  1YXA A;  4GA7 A;  2B4X L;  4RSQ A;  4CAA A;  2PEE A;  1JJO C;  3DRM A;  2VH4 A;  1QLP A;  3EOX A;  3EVJ I;  4C49 A;  1OPH A;  4YIA A;  1MTP A;  2XN6 A;  4AU3 B;  1XQJ A;  1C5G A;  2XN5 A;  4AU2 A;  2ACH A;  1DB2 A;  3Q03 A;  3STO A;  1D5S A;  4BB2 A;  2HIJ I;  1OVA C;  2BEH I;  2CEO A;  4Y40 A;  3ZHA A;  3LE2 A;  1ATU A;  2HI9 A;  1DVM A;  3Q02 A;  3F5N A;  1C8O A;  2WXZ A;  4EB1 I;  1IZ2 A;  2ARR A;  2XN3 A;  3CAA A;  3PZF A;  1ATT A;  1NQ9 I;  1WZ9 A;  2WXY C;  1DZG I;  2RIV A;  1JMO A;  1SNG A;  3CWM A;  3DLW A;  4PYW A;  1DZH I;  4Y3K A;  5BRR I;  1JRR A;  4G8R A;  1UHG A;  2QUG A;  5HGC A;  1LJ5 A;  1R1L I;  3KCG I;  1AS4 A;  2DUT A;  5CDX A;  1QMN A;  2ARQ A;  2H4R A;  4IC0 A;  2WXX A;  1OVA B;  3CVM A;  1BY7 A;  8API A;  1AZX I;  4ZK3 A;  1K9O I;  4AU3 A;  1OO8 A;  2XN7 A;  2VDY A;  1IMV A;  2B4X I;  4ROA A;  2V95 A;  5C98 A;  1EZX A;  1ANT I; 
#chains in the Genus database with same CATH topology
 1B3K A;  1ATH A;  2WXZ C;  1LK6 I;  1JMJ A;  2R9Y A;  3DRU A;  1KCT A;  3H5C A;  4AQH A;  2OAY A;  4DY7 C;  4AU4 A;  1QMB A;  1OYH L;  3CWL A;  1LQ8 A;  1M93 B;  3R4L A;  2GD4 C;  9API A;  5INW A;  5IO1 A;  1E05 I;  2D26 A;  3LW2 A;  3T1P A;  2HIJ L;  1DVN A;  1SR5 A;  2BEH L;  1HLE A;  4ROB A;  5CDZ A;  3NDD A;  3UT3 A;  2WY0 C;  4AJU A;  2WXW A;  4G8O A;  1SEK A;  2ZV6 A;  4P0O A;  4EB1 L;  5EI0 A;  1E03 I;  3NDA A;  3NE4 A;  1OC0 A;  1JVQ I;  3DY0 A;  3F02 A;  4KDS A;  1DZG L;  3FGQ A;  1PSI A;  4DY0 A;  1OVA A;  1OYH I;  1DZH L;  2WY1 A;  4AJT A;  1HP7 A;  2H4Q A;  1T1F A;  4RO9 A;  7API A;  3F1S A;  1A7C A;  2H4P A;  3NDF A;  3VVJ A;  1BR8 I;  2PEF A;  1XQG A;  2ZNH A;  1XU8 A;  5CE0 A;  4C41 A;  4R9I A;  4IF8 A;  2OL2 A;  4ZK0 A;  2ANT I;  1TB6 I;  2B5T I;  2RIW A;  2VDX A;  3PB1 I;  1F0C A;  1E04 I;  3B9F I;  9PAI A;  3OZQ A;  4AFX A;  1JTI A;  4P0F A;  4DTE A;  4X30 A;  1YXA A;  4GA7 A;  2B4X L;  4RSQ A;  4CAA A;  2PEE A;  1JJO C;  3DRM A;  2VH4 A;  1QLP A;  3EOX A;  3EVJ I;  4C49 A;  1OPH A;  4YIA A;  1MTP A;  2XN6 A;  4AU3 B;  1XQJ A;  1C5G A;  2XN5 A;  4AU2 A;  2ACH A;  1DB2 A;  3Q03 A;  3STO A;  1D5S A;  4BB2 A;  2HIJ I;  1OVA C;  2BEH I;  2CEO A;  4Y40 A;  3ZHA A;  3LE2 A;  1ATU A;  2HI9 A;  1DVM A;  3Q02 A;  3F5N A;  1C8O A;  2WXZ A;  4EB1 I;  1IZ2 A;  2ARR A;  2XN3 A;  3CAA A;  3PZF A;  1ATT A;  1NQ9 I;  1WZ9 A;  2WXY C;  1DZG I;  2RIV A;  1JMO A;  1SNG A;  3CWM A;  3DLW A;  4PYW A;  1DZH I;  4Y3K A;  5BRR I;  1JRR A;  4G8R A;  1UHG A;  2QUG A;  5HGC A;  1LJ5 A;  1R1L I;  3KCG I;  1AS4 A;  2DUT A;  5CDX A;  1QMN A;  2ARQ A;  2H4R A;  4IC0 A;  2WXX A;  1OVA B;  3CVM A;  1BY7 A;  8API A;  1AZX I;  4ZK3 A;  1K9O I;  4AU3 A;  1OO8 A;  2XN7 A;  2VDY A;  1IMV A;  2B4X I;  4ROA A;  2V95 A;  5C98 A;  1EZX A;  1ANT I; 
#chains in the Genus database with same CATH homology
 1B3K A;  1ATH A;  2WXZ C;  1LK6 I;  1JMJ A;  2R9Y A;  3DRU A;  1KCT A;  3H5C A;  4AQH A;  2OAY A;  4DY7 C;  4AU4 A;  1QMB A;  1OYH L;  3CWL A;  1LQ8 A;  1M93 B;  3R4L A;  2GD4 C;  9API A;  5INW A;  5IO1 A;  1E05 I;  2D26 A;  3LW2 A;  3T1P A;  2HIJ L;  1DVN A;  1SR5 A;  2BEH L;  1HLE A;  4ROB A;  5CDZ A;  3NDD A;  3UT3 A;  2WY0 C;  4AJU A;  2WXW A;  4G8O A;  1SEK A;  2ZV6 A;  4P0O A;  4EB1 L;  5EI0 A;  1E03 I;  3NDA A;  3NE4 A;  1OC0 A;  1JVQ I;  3DY0 A;  3F02 A;  4KDS A;  1DZG L;  3FGQ A;  1PSI A;  4DY0 A;  1OVA A;  1OYH I;  1DZH L;  2WY1 A;  4AJT A;  1HP7 A;  2H4Q A;  1T1F A;  4RO9 A;  7API A;  3F1S A;  1A7C A;  2H4P A;  3NDF A;  3VVJ A;  1BR8 I;  2PEF A;  1XQG A;  2ZNH A;  1XU8 A;  5CE0 A;  4C41 A;  4R9I A;  4IF8 A;  2OL2 A;  4ZK0 A;  2ANT I;  1TB6 I;  2B5T I;  2RIW A;  2VDX A;  3PB1 I;  1F0C A;  1E04 I;  3B9F I;  9PAI A;  3OZQ A;  4AFX A;  1JTI A;  4P0F A;  4DTE A;  4X30 A;  1YXA A;  4GA7 A;  2B4X L;  4RSQ A;  4CAA A;  2PEE A;  1JJO C;  3DRM A;  2VH4 A;  1QLP A;  3EOX A;  3EVJ I;  4C49 A;  1OPH A;  4YIA A;  1MTP A;  2XN6 A;  4AU3 B;  1XQJ A;  1C5G A;  2XN5 A;  4AU2 A;  2ACH A;  1DB2 A;  3Q03 A;  3STO A;  1D5S A;  4BB2 A;  2HIJ I;  1OVA C;  2BEH I;  2CEO A;  4Y40 A;  3ZHA A;  3LE2 A;  1ATU A;  2HI9 A;  1DVM A;  3Q02 A;  3F5N A;  1C8O A;  2WXZ A;  4EB1 I;  1IZ2 A;  2ARR A;  2XN3 A;  3CAA A;  3PZF A;  1ATT A;  1NQ9 I;  1WZ9 A;  2WXY C;  1DZG I;  2RIV A;  1JMO A;  1SNG A;  3CWM A;  3DLW A;  4PYW A;  1DZH I;  4Y3K A;  5BRR I;  1JRR A;  4G8R A;  1UHG A;  2QUG A;  5HGC A;  1LJ5 A;  1R1L I;  3KCG I;  1AS4 A;  2DUT A;  5CDX A;  1QMN A;  2ARQ A;  2H4R A;  4IC0 A;  2WXX A;  1OVA B;  3CVM A;  1BY7 A;  8API A;  1AZX I;  4ZK3 A;  1K9O I;  4AU3 A;  1OO8 A;  2XN7 A;  2VDY A;  1IMV A;  2B4X I;  4ROA A;  2V95 A;  5C98 A;  1EZX A;  1ANT I; 
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similar chains in the Genus database (?% sequence similarity)
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