4KDSA

Crystal structure of latent rainbow trout plasminogen activator inhibitor 1 (pai-1)
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
370
structure length
370
Chain Sequence
NLQEKQTDFGMRVFSQVAQNSKGSNLAFSPYGVATILAMAQLGAGGNTLKTLNAKLGFSLQERGMARQQRLLQRDISSEEGVELASGVMVERKMALEKGFRRGLGKAFQASPHQLDFSRPDQALDIINAWVSDHTAGTIPSFLSSGALTDETRMVLLNALHFQGLWKVPFDPKMTEERLFHCANGSSVPVPMMRLTHRFKYGEFVTPDGVDYDVIEVPYEGESLSMLLVSPFEPETPVSSLSSELTTQRLQQWRQEMRSVKRQLVLPRFTLDSEVELKSILIQMGLGDMFNLAKADFTRITTEQPLCVSKVLQKVKIEVNEEGTKASAATAAILFSRMAVEEITMNRPFLFLIHHKSTGAVLFMGQVNQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Plasminogen activator inhibitor 1
publication title Protein conformational change delayed by steric hindrance from an N-linked glycan.
pubmed doi rcsb
source organism Oncorhynchus mykiss
total genus 109
structure length 370
sequence length 370
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 4kdsA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 4kdsA01
1UHGA 1PSIA 1JVQI 1D5SA 3STOA 4RSQA 3F1SA 1E03I 3CWMA 1K9OI 2ZNHA 1ATUA 1OC0A 2B4XI 2VDYA 9PAIA 5C98A 1JJOC 1OPHA 2H4RA 3R4LA 4RO9A 9APIA 1JMJA 1DVMA 2H4PA 3DY0A 4P0OA 1C8OA 1LQ8A 1B3KA 1YXAA 4BB2A 1F0CA 3PZFA 5EI0A 4ROBA 5INWA 3LE2A 2RIWA 1IZ2A 3F5NA 5CDXA 3T1PA 2PEEA 2QUGA 4IF8A 4AU4A 4ZK0A 1JTIA 1E04I 1OVAA 4ZK3A 3Q03A 4G8RA 2D26A 2ARRA 5CDZA 1EZXA 4AU3B 1HLEA 1DB2A 3F02A 2WXWA 1ANTI 2WXZA 3DLWA 5BRRI 2ARQA 4KDSA 2WXYC 2ANTI 3NE4A 1IMVA 4ROAA 1DVNA 2XN6A 1DZHL 1OYHL 4Y3KA 3FGQA 4G8OA 3NDFA 3NDDA 1ATTA 1AS4A 1NQ9I 3Q02A 3B9FI 7APIA 4DTEA 4CAAA 3KCGI 3LW2A 1JRRA 2ZV6A 1QMBA 1DZGI 1DZHI 1XQGA 1C5GA 2XN7A 3H5CA 1OYHI 4X30A 4C41A 4DY0A 4EB1L 2V95A 4AJUA 1T1FA 2VDXA 2CEOA 3NDAA 3PB1I 1HP7A 1SEKA 2HI9A 3DRMA 1M93B 2XN3A 2B5TI 4AJTA 2WY0C 8APIA 4AU3A 1DZGL 2XN5A 5CE0A 1XQJA 4EB1I 4PYWA 4GA7A 5HGCA 1WZ9A 3OZQA 2DUTA 3CVMA 1QLPA 1ATHA 2GD4C 2VH4A 1OVAC 1XU8A 1TB6I 4AU2A 3CAAA 1LJ5A 1A7CA 1E05I 2WXZC 4YIAA 2PEFA 1KCTA 1AZXI 3ZHAA 1R1LI 2ACHA 1OO8A 1QMNA 1SR5A 1MTPA 1JMOA 2BEHL 1BR8I 5IO1A 2HIJL 4R9IA 3CWLA 1BY7A 1OVAB 2OL2A 2RIVA 2H4QA 3VVJA 4DY7C 4AFXA 3DRUA 2B4XL 3EVJI 4P0FA 3EOXA 4AQHA 4IC0A 3UT3A 2WXXA 2R9YA 2OAYA 4C49A 1LK6I 4Y40A 2BEHI 2WY1A 1SNGA 2HIJI
chains in the Genus database with same CATH superfamily
1UHGA 1PSIA 1JVQI 1D5SA 3STOA 4RSQA 3F1SA 1E03I 3CWMA 1K9OI 2ZNHA 1ATUA 1OC0A 2B4XI 2VDYA 9PAIA 5C98A 1JJOC 1OPHA 2H4RA 3R4LA 4RO9A 9APIA 1JMJA 1DVMA 2H4PA 3DY0A 4P0OA 1C8OA 1LQ8A 1B3KA 1YXAA 4BB2A 1F0CA 3PZFA 5EI0A 4ROBA 5INWA 3LE2A 2RIWA 1IZ2A 3F5NA 5CDXA 3T1PA 2PEEA 2QUGA 4IF8A 4AU4A 4ZK0A 1JTIA 1E04I 1OVAA 4ZK3A 3Q03A 4G8RA 2D26A 2ARRA 5CDZA 1EZXA 4AU3B 1HLEA 1DB2A 3F02A 2WXWA 1ANTI 2WXZA 3DLWA 5BRRI 2ARQA 4KDSA 2WXYC 2ANTI 3NE4A 1IMVA 4ROAA 1DVNA 2XN6A 1DZHL 1OYHL 4Y3KA 3FGQA 4G8OA 3NDFA 3NDDA 1ATTA 1AS4A 1NQ9I 3Q02A 3B9FI 7APIA 4DTEA 4CAAA 3KCGI 3LW2A 1JRRA 2ZV6A 1QMBA 1DZGI 1DZHI 1XQGA 1C5GA 2XN7A 3H5CA 1OYHI 4X30A 4C41A 4DY0A 4EB1L 2V95A 4AJUA 1T1FA 2VDXA 2CEOA 3NDAA 3PB1I 1HP7A 1SEKA 2HI9A 3DRMA 1M93B 2XN3A 2B5TI 4AJTA 2WY0C 8APIA 4AU3A 1DZGL 2XN5A 5CE0A 1XQJA 4EB1I 4PYWA 4GA7A 5HGCA 1WZ9A 3OZQA 2DUTA 3CVMA 1QLPA 1ATHA 2GD4C 2VH4A 1OVAC 1XU8A 1TB6I 4AU2A 3CAAA 1LJ5A 1A7CA 1E05I 2WXZC 4YIAA 2PEFA 1KCTA 1AZXI 3ZHAA 1R1LI 2ACHA 1OO8A 1QMNA 1SR5A 1MTPA 1JMOA 2BEHL 1BR8I 5IO1A 2HIJL 4R9IA 3CWLA 1BY7A 1OVAB 2OL2A 2RIVA 2H4QA 3VVJA 4DY7C 4AFXA 3DRUA 2B4XL 3EVJI 4P0FA 3EOXA 4AQHA 4IC0A 3UT3A 2WXXA 2R9YA 2OAYA 4C49A 1LK6I 4Y40A 2BEHI 2WY1A 1SNGA 2HIJI
chains in the Genus database with same CATH topology
1UHGA 1PSIA 1JVQI 1D5SA 3STOA 4RSQA 3F1SA 1E03I 3CWMA 1K9OI 2ZNHA 1ATUA 1OC0A 2B4XI 2VDYA 9PAIA 5C98A 1JJOC 1OPHA 2H4RA 3R4LA 4RO9A 9APIA 1JMJA 1DVMA 2H4PA 3DY0A 4P0OA 1C8OA 1LQ8A 1B3KA 1YXAA 4BB2A 1F0CA 3PZFA 5EI0A 4ROBA 5INWA 3LE2A 2RIWA 1IZ2A 3F5NA 5CDXA 3T1PA 2PEEA 2QUGA 4IF8A 4AU4A 4ZK0A 1JTIA 1E04I 1OVAA 4ZK3A 3Q03A 4G8RA 2D26A 2ARRA 5CDZA 1EZXA 4AU3B 1HLEA 1DB2A 3F02A 2WXWA 1ANTI 2WXZA 3DLWA 5BRRI 2ARQA 4KDSA 2WXYC 2ANTI 3NE4A 1IMVA 4ROAA 1DVNA 2XN6A 1DZHL 1OYHL 4Y3KA 3FGQA 4G8OA 3NDFA 3NDDA 1ATTA 1AS4A 1NQ9I 3Q02A 3B9FI 7APIA 4DTEA 4CAAA 3KCGI 3LW2A 1JRRA 2ZV6A 1QMBA 1DZGI 1DZHI 1XQGA 1C5GA 2XN7A 3H5CA 1OYHI 4X30A 4C41A 4DY0A 4EB1L 2V95A 4AJUA 1T1FA 2VDXA 2CEOA 3NDAA 3PB1I 1HP7A 1SEKA 2HI9A 3DRMA 1M93B 2XN3A 2B5TI 4AJTA 2WY0C 8APIA 4AU3A 1DZGL 2XN5A 5CE0A 1XQJA 4EB1I 4PYWA 4GA7A 5HGCA 1WZ9A 3OZQA 2DUTA 3CVMA 1QLPA 1ATHA 2GD4C 2VH4A 1OVAC 1XU8A 1TB6I 4AU2A 3CAAA 1LJ5A 1A7CA 1E05I 2WXZC 4YIAA 2PEFA 1KCTA 1AZXI 3ZHAA 1R1LI 2ACHA 1OO8A 1QMNA 1SR5A 1MTPA 1JMOA 2BEHL 1BR8I 5IO1A 2HIJL 4R9IA 3CWLA 1BY7A 1OVAB 2OL2A 2RIVA 2H4QA 3VVJA 4DY7C 4AFXA 3DRUA 2B4XL 3EVJI 4P0FA 3EOXA 4AQHA 4IC0A 3UT3A 2WXXA 2R9YA 2OAYA 4C49A 1LK6I 4Y40A 2BEHI 2WY1A 1SNGA 2HIJI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UHG A;  1PSI A;  1JVQ I;  1D5S A;  3STO A;  4RSQ A;  3F1S A;  1E03 I;  3CWM A;  1K9O I;  2ZNH A;  1ATU A;  1OC0 A;  2B4X I;  2VDY A;  9PAI A;  5C98 A;  1JJO C;  1OPH A;  2H4R A;  3R4L A;  4RO9 A;  9API A;  1JMJ A;  1DVM A;  2H4P A;  3DY0 A;  4P0O A;  1C8O A;  1LQ8 A;  1B3K A;  1YXA A;  4BB2 A;  1F0C A;  3PZF A;  5EI0 A;  4ROB A;  5INW A;  3LE2 A;  2RIW A;  1IZ2 A;  3F5N A;  5CDX A;  3T1P A;  2PEE A;  2QUG A;  4IF8 A;  4AU4 A;  4ZK0 A;  1JTI A;  1E04 I;  1OVA A;  4ZK3 A;  3Q03 A;  4G8R A;  2D26 A;  2ARR A;  5CDZ A;  1EZX A;  4AU3 B;  1HLE A;  1DB2 A;  3F02 A;  2WXW A;  1ANT I;  2WXZ A;  3DLW A;  5BRR I;  2ARQ A;  4KDS A;  2WXY C;  2ANT I;  3NE4 A;  1IMV A;  4ROA A;  1DVN A;  2XN6 A;  1DZH L;  1OYH L;  4Y3K A;  3FGQ A;  4G8O A;  3NDF A;  3NDD A;  1ATT A;  1AS4 A;  1NQ9 I;  3Q02 A;  3B9F I;  7API A;  4DTE A;  4CAA A;  3KCG I;  3LW2 A;  1JRR A;  2ZV6 A;  1QMB A;  1DZG I;  1DZH I;  1XQG A;  1C5G A;  2XN7 A;  3H5C A;  1OYH I;  4X30 A;  4C41 A;  4DY0 A;  4EB1 L;  2V95 A;  4AJU A;  1T1F A;  2VDX A;  2CEO A;  3NDA A;  3PB1 I;  1HP7 A;  1SEK A;  2HI9 A;  3DRM A;  1M93 B;  2XN3 A;  2B5T I;  4AJT A;  2WY0 C;  8API A;  4AU3 A;  1DZG L;  2XN5 A;  5CE0 A;  1XQJ A;  4EB1 I;  4PYW A;  4GA7 A;  5HGC A;  1WZ9 A;  3OZQ A;  2DUT A;  3CVM A;  1QLP A;  1ATH A;  2GD4 C;  2VH4 A;  1OVA C;  1XU8 A;  1TB6 I;  4AU2 A;  3CAA A;  1LJ5 A;  1A7C A;  1E05 I;  2WXZ C;  4YIA A;  2PEF A;  1KCT A;  1AZX I;  3ZHA A;  1R1L I;  2ACH A;  1OO8 A;  1QMN A;  1SR5 A;  1MTP A;  1JMO A;  2BEH L;  1BR8 I;  5IO1 A;  2HIJ L;  4R9I A;  3CWL A;  1BY7 A;  1OVA B;  2OL2 A;  2RIV A;  2H4Q A;  3VVJ A;  4DY7 C;  4AFX A;  3DRU A;  2B4X L;  3EVJ I;  4P0F A;  3EOX A;  4AQH A;  4IC0 A;  3UT3 A;  2WXX A;  2R9Y A;  2OAY A;  4C49 A;  1LK6 I;  4Y40 A;  2BEH I;  2WY1 A;  1SNG A;  2HIJ I; 
#chains in the Genus database with same CATH topology
 1UHG A;  1PSI A;  1JVQ I;  1D5S A;  3STO A;  4RSQ A;  3F1S A;  1E03 I;  3CWM A;  1K9O I;  2ZNH A;  1ATU A;  1OC0 A;  2B4X I;  2VDY A;  9PAI A;  5C98 A;  1JJO C;  1OPH A;  2H4R A;  3R4L A;  4RO9 A;  9API A;  1JMJ A;  1DVM A;  2H4P A;  3DY0 A;  4P0O A;  1C8O A;  1LQ8 A;  1B3K A;  1YXA A;  4BB2 A;  1F0C A;  3PZF A;  5EI0 A;  4ROB A;  5INW A;  3LE2 A;  2RIW A;  1IZ2 A;  3F5N A;  5CDX A;  3T1P A;  2PEE A;  2QUG A;  4IF8 A;  4AU4 A;  4ZK0 A;  1JTI A;  1E04 I;  1OVA A;  4ZK3 A;  3Q03 A;  4G8R A;  2D26 A;  2ARR A;  5CDZ A;  1EZX A;  4AU3 B;  1HLE A;  1DB2 A;  3F02 A;  2WXW A;  1ANT I;  2WXZ A;  3DLW A;  5BRR I;  2ARQ A;  4KDS A;  2WXY C;  2ANT I;  3NE4 A;  1IMV A;  4ROA A;  1DVN A;  2XN6 A;  1DZH L;  1OYH L;  4Y3K A;  3FGQ A;  4G8O A;  3NDF A;  3NDD A;  1ATT A;  1AS4 A;  1NQ9 I;  3Q02 A;  3B9F I;  7API A;  4DTE A;  4CAA A;  3KCG I;  3LW2 A;  1JRR A;  2ZV6 A;  1QMB A;  1DZG I;  1DZH I;  1XQG A;  1C5G A;  2XN7 A;  3H5C A;  1OYH I;  4X30 A;  4C41 A;  4DY0 A;  4EB1 L;  2V95 A;  4AJU A;  1T1F A;  2VDX A;  2CEO A;  3NDA A;  3PB1 I;  1HP7 A;  1SEK A;  2HI9 A;  3DRM A;  1M93 B;  2XN3 A;  2B5T I;  4AJT A;  2WY0 C;  8API A;  4AU3 A;  1DZG L;  2XN5 A;  5CE0 A;  1XQJ A;  4EB1 I;  4PYW A;  4GA7 A;  5HGC A;  1WZ9 A;  3OZQ A;  2DUT A;  3CVM A;  1QLP A;  1ATH A;  2GD4 C;  2VH4 A;  1OVA C;  1XU8 A;  1TB6 I;  4AU2 A;  3CAA A;  1LJ5 A;  1A7C A;  1E05 I;  2WXZ C;  4YIA A;  2PEF A;  1KCT A;  1AZX I;  3ZHA A;  1R1L I;  2ACH A;  1OO8 A;  1QMN A;  1SR5 A;  1MTP A;  1JMO A;  2BEH L;  1BR8 I;  5IO1 A;  2HIJ L;  4R9I A;  3CWL A;  1BY7 A;  1OVA B;  2OL2 A;  2RIV A;  2H4Q A;  3VVJ A;  4DY7 C;  4AFX A;  3DRU A;  2B4X L;  3EVJ I;  4P0F A;  3EOX A;  4AQH A;  4IC0 A;  3UT3 A;  2WXX A;  2R9Y A;  2OAY A;  4C49 A;  1LK6 I;  4Y40 A;  2BEH I;  2WY1 A;  1SNG A;  2HIJ I; 
#chains in the Genus database with same CATH homology
 1UHG A;  1PSI A;  1JVQ I;  1D5S A;  3STO A;  4RSQ A;  3F1S A;  1E03 I;  3CWM A;  1K9O I;  2ZNH A;  1ATU A;  1OC0 A;  2B4X I;  2VDY A;  9PAI A;  5C98 A;  1JJO C;  1OPH A;  2H4R A;  3R4L A;  4RO9 A;  9API A;  1JMJ A;  1DVM A;  2H4P A;  3DY0 A;  4P0O A;  1C8O A;  1LQ8 A;  1B3K A;  1YXA A;  4BB2 A;  1F0C A;  3PZF A;  5EI0 A;  4ROB A;  5INW A;  3LE2 A;  2RIW A;  1IZ2 A;  3F5N A;  5CDX A;  3T1P A;  2PEE A;  2QUG A;  4IF8 A;  4AU4 A;  4ZK0 A;  1JTI A;  1E04 I;  1OVA A;  4ZK3 A;  3Q03 A;  4G8R A;  2D26 A;  2ARR A;  5CDZ A;  1EZX A;  4AU3 B;  1HLE A;  1DB2 A;  3F02 A;  2WXW A;  1ANT I;  2WXZ A;  3DLW A;  5BRR I;  2ARQ A;  4KDS A;  2WXY C;  2ANT I;  3NE4 A;  1IMV A;  4ROA A;  1DVN A;  2XN6 A;  1DZH L;  1OYH L;  4Y3K A;  3FGQ A;  4G8O A;  3NDF A;  3NDD A;  1ATT A;  1AS4 A;  1NQ9 I;  3Q02 A;  3B9F I;  7API A;  4DTE A;  4CAA A;  3KCG I;  3LW2 A;  1JRR A;  2ZV6 A;  1QMB A;  1DZG I;  1DZH I;  1XQG A;  1C5G A;  2XN7 A;  3H5C A;  1OYH I;  4X30 A;  4C41 A;  4DY0 A;  4EB1 L;  2V95 A;  4AJU A;  1T1F A;  2VDX A;  2CEO A;  3NDA A;  3PB1 I;  1HP7 A;  1SEK A;  2HI9 A;  3DRM A;  1M93 B;  2XN3 A;  2B5T I;  4AJT A;  2WY0 C;  8API A;  4AU3 A;  1DZG L;  2XN5 A;  5CE0 A;  1XQJ A;  4EB1 I;  4PYW A;  4GA7 A;  5HGC A;  1WZ9 A;  3OZQ A;  2DUT A;  3CVM A;  1QLP A;  1ATH A;  2GD4 C;  2VH4 A;  1OVA C;  1XU8 A;  1TB6 I;  4AU2 A;  3CAA A;  1LJ5 A;  1A7C A;  1E05 I;  2WXZ C;  4YIA A;  2PEF A;  1KCT A;  1AZX I;  3ZHA A;  1R1L I;  2ACH A;  1OO8 A;  1QMN A;  1SR5 A;  1MTP A;  1JMO A;  2BEH L;  1BR8 I;  5IO1 A;  2HIJ L;  4R9I A;  3CWL A;  1BY7 A;  1OVA B;  2OL2 A;  2RIV A;  2H4Q A;  3VVJ A;  4DY7 C;  4AFX A;  3DRU A;  2B4X L;  3EVJ I;  4P0F A;  3EOX A;  4AQH A;  4IC0 A;  3UT3 A;  2WXX A;  2R9Y A;  2OAY A;  4C49 A;  1LK6 I;  4Y40 A;  2BEH I;  2WY1 A;  1SNG A;  2HIJ I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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