4P0FA

Cleaved serpin 42da (c 2 2 21)
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
384
structure length
369
Chain Sequence
AAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQILRIANKIFVMDGYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLTVQVPMMSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMAVRRKRPIEFFADHPFTYVLVHQDLPLFWGSVVRLEENTFASS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Serine protease inhibitor 4, isoform B
publication title High resolution structure of cleaved Serpin 42 Da from Drosophila melanogaster.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 112
structure length 369
sequence length 384
ec nomenclature
pdb deposition date 2014-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 4p0fA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 4p0fA01
2R9YA 1LQ8A 4ROAA 1DZHL 1A7CA 2VDXA 5CDZA 2PEFA 1BR8I 1XU8A 4EB1I 3PZFA 1OC0A 2VH4A 4AU3B 4RSQA 2WXWA 3UT3A 3KCGI 1DZGL 1E05I 2B4XI 1OO8A 9PAIA 1OVAB 1C5GA 1JMJA 4DY0A 4AU2A 1OYHI 2B4XL 1B3KA 2ANTI 3NDAA 1IMVA 1JMOA 2XN6A 3NE4A 4G8OA 9APIA 2ZNHA 1MTPA 3EVJI 2DUTA 5INWA 4X30A 1DVNA 4ROBA 1HP7A 1LJ5A 2WXXA 3LW2A 3ZHAA 1OVAC 1E03I 3VVJA 1F0CA 1PSIA 1LK6I 3CWLA 3DY0A 2D26A 2WY1A 4AJTA 1T1FA 1QMNA 4EB1L 3F5NA 1ATUA 3LE2A 1TB6I 1D5SA 4IF8A 4AFXA 2BEHI 2ARQA 3B9FI 3DRMA 3CAAA 2QUGA 4C49A 2BEHL 4P0FA 1YXAA 1AS4A 1OYHL 1K9OI 3Q02A 4AJUA 2H4QA 3FGQA 3CVMA 4AU4A 3R4LA 4CAAA 2ARRA 3PB1I 3H5CA 5CE0A 8APIA 2ZV6A 2ACHA 4R9IA 4ZK3A 2WXZC 2WXYC 1AZXI 4AQHA 1DVMA 2XN3A 3NDFA 5CDXA 1SR5A 4ZK0A 5EI0A 3F02A 2PEEA 7APIA 1R1LI 2RIWA 1ATTA 1UHGA 1BY7A 1JRRA 1JTIA 4KDSA 5IO1A 3DRUA 1DB2A 4P0OA 3NDDA 5HGCA 1ATHA 2B5TI 1HLEA 5BRRI 4DTEA 5C98A 4IC0A 4GA7A 1NQ9I 2V95A 1SNGA 1WZ9A 1E04I 4AU3A 4C41A 2HI9A 1DZGI 4YIAA 1IZ2A 2VDYA 3T1PA 4DY7C 2HIJI 3STOA 1JJOC 3OZQA 2OL2A 1M93B 1OVAA 2H4PA 3F1SA 2XN7A 4RO9A 2WXZA 2H4RA 2HIJL 1QMBA 4Y3KA 2GD4C 1QLPA 2CEOA 4BB2A 1C8OA 1KCTA 2OAYA 3CWMA 1OPHA 4PYWA 1XQJA 4Y40A 2WY0C 1SEKA 4G8RA 1JVQI 2RIVA 1ANTI 1XQGA 1EZXA 1DZHI 3EOXA 2XN5A 3DLWA 3Q03A
chains in the Genus database with same CATH superfamily
2R9YA 1LQ8A 4ROAA 1DZHL 1A7CA 2VDXA 5CDZA 2PEFA 1BR8I 1XU8A 4EB1I 3PZFA 1OC0A 2VH4A 4AU3B 4RSQA 2WXWA 3UT3A 3KCGI 1DZGL 1E05I 2B4XI 1OO8A 9PAIA 1OVAB 1C5GA 1JMJA 4DY0A 4AU2A 1OYHI 2B4XL 1B3KA 2ANTI 3NDAA 1IMVA 1JMOA 2XN6A 3NE4A 4G8OA 9APIA 2ZNHA 1MTPA 3EVJI 2DUTA 5INWA 4X30A 1DVNA 4ROBA 1HP7A 1LJ5A 2WXXA 3LW2A 3ZHAA 1OVAC 1E03I 3VVJA 1F0CA 1PSIA 1LK6I 3CWLA 3DY0A 2D26A 2WY1A 4AJTA 1T1FA 1QMNA 4EB1L 3F5NA 1ATUA 3LE2A 1TB6I 1D5SA 4IF8A 4AFXA 2BEHI 2ARQA 3B9FI 3DRMA 3CAAA 2QUGA 4C49A 2BEHL 4P0FA 1YXAA 1AS4A 1OYHL 1K9OI 3Q02A 4AJUA 2H4QA 3FGQA 3CVMA 4AU4A 3R4LA 4CAAA 2ARRA 3PB1I 3H5CA 5CE0A 8APIA 2ZV6A 2ACHA 4R9IA 4ZK3A 2WXZC 2WXYC 1AZXI 4AQHA 1DVMA 2XN3A 3NDFA 5CDXA 1SR5A 4ZK0A 5EI0A 3F02A 2PEEA 7APIA 1R1LI 2RIWA 1ATTA 1UHGA 1BY7A 1JRRA 1JTIA 4KDSA 5IO1A 3DRUA 1DB2A 4P0OA 3NDDA 5HGCA 1ATHA 2B5TI 1HLEA 5BRRI 4DTEA 5C98A 4IC0A 4GA7A 1NQ9I 2V95A 1SNGA 1WZ9A 1E04I 4AU3A 4C41A 2HI9A 1DZGI 4YIAA 1IZ2A 2VDYA 3T1PA 4DY7C 2HIJI 3STOA 1JJOC 3OZQA 2OL2A 1M93B 1OVAA 2H4PA 3F1SA 2XN7A 4RO9A 2WXZA 2H4RA 2HIJL 1QMBA 4Y3KA 2GD4C 1QLPA 2CEOA 4BB2A 1C8OA 1KCTA 2OAYA 3CWMA 1OPHA 4PYWA 1XQJA 4Y40A 2WY0C 1SEKA 4G8RA 1JVQI 2RIVA 1ANTI 1XQGA 1EZXA 1DZHI 3EOXA 2XN5A 3DLWA 3Q03A
chains in the Genus database with same CATH topology
2R9YA 1LQ8A 4ROAA 1DZHL 1A7CA 2VDXA 5CDZA 2PEFA 1BR8I 1XU8A 4EB1I 3PZFA 1OC0A 2VH4A 4AU3B 4RSQA 2WXWA 3UT3A 3KCGI 1DZGL 1E05I 2B4XI 1OO8A 9PAIA 1OVAB 1C5GA 1JMJA 4DY0A 4AU2A 1OYHI 2B4XL 1B3KA 2ANTI 3NDAA 1IMVA 1JMOA 2XN6A 3NE4A 4G8OA 9APIA 2ZNHA 1MTPA 3EVJI 2DUTA 5INWA 4X30A 1DVNA 4ROBA 1HP7A 1LJ5A 2WXXA 3LW2A 3ZHAA 1OVAC 1E03I 3VVJA 1F0CA 1PSIA 1LK6I 3CWLA 3DY0A 2D26A 2WY1A 4AJTA 1T1FA 1QMNA 4EB1L 3F5NA 1ATUA 3LE2A 1TB6I 1D5SA 4IF8A 4AFXA 2BEHI 2ARQA 3B9FI 3DRMA 3CAAA 2QUGA 4C49A 2BEHL 4P0FA 1YXAA 1AS4A 1OYHL 1K9OI 3Q02A 4AJUA 2H4QA 3FGQA 3CVMA 4AU4A 3R4LA 4CAAA 2ARRA 3PB1I 3H5CA 5CE0A 8APIA 2ZV6A 2ACHA 4R9IA 4ZK3A 2WXZC 2WXYC 1AZXI 4AQHA 1DVMA 2XN3A 3NDFA 5CDXA 1SR5A 4ZK0A 5EI0A 3F02A 2PEEA 7APIA 1R1LI 2RIWA 1ATTA 1UHGA 1BY7A 1JRRA 1JTIA 4KDSA 5IO1A 3DRUA 1DB2A 4P0OA 3NDDA 5HGCA 1ATHA 2B5TI 1HLEA 5BRRI 4DTEA 5C98A 4IC0A 4GA7A 1NQ9I 2V95A 1SNGA 1WZ9A 1E04I 4AU3A 4C41A 2HI9A 1DZGI 4YIAA 1IZ2A 2VDYA 3T1PA 4DY7C 2HIJI 3STOA 1JJOC 3OZQA 2OL2A 1M93B 1OVAA 2H4PA 3F1SA 2XN7A 4RO9A 2WXZA 2H4RA 2HIJL 1QMBA 4Y3KA 2GD4C 1QLPA 2CEOA 4BB2A 1C8OA 1KCTA 2OAYA 3CWMA 1OPHA 4PYWA 1XQJA 4Y40A 2WY0C 1SEKA 4G8RA 1JVQI 2RIVA 1ANTI 1XQGA 1EZXA 1DZHI 3EOXA 2XN5A 3DLWA 3Q03A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R9Y A;  1LQ8 A;  4ROA A;  1DZH L;  1A7C A;  2VDX A;  5CDZ A;  2PEF A;  1BR8 I;  1XU8 A;  4EB1 I;  3PZF A;  1OC0 A;  2VH4 A;  4AU3 B;  4RSQ A;  2WXW A;  3UT3 A;  3KCG I;  1DZG L;  1E05 I;  2B4X I;  1OO8 A;  9PAI A;  1OVA B;  1C5G A;  1JMJ A;  4DY0 A;  4AU2 A;  1OYH I;  2B4X L;  1B3K A;  2ANT I;  3NDA A;  1IMV A;  1JMO A;  2XN6 A;  3NE4 A;  4G8O A;  9API A;  2ZNH A;  1MTP A;  3EVJ I;  2DUT A;  5INW A;  4X30 A;  1DVN A;  4ROB A;  1HP7 A;  1LJ5 A;  2WXX A;  3LW2 A;  3ZHA A;  1OVA C;  1E03 I;  3VVJ A;  1F0C A;  1PSI A;  1LK6 I;  3CWL A;  3DY0 A;  2D26 A;  2WY1 A;  4AJT A;  1T1F A;  1QMN A;  4EB1 L;  3F5N A;  1ATU A;  3LE2 A;  1TB6 I;  1D5S A;  4IF8 A;  4AFX A;  2BEH I;  2ARQ A;  3B9F I;  3DRM A;  3CAA A;  2QUG A;  4C49 A;  2BEH L;  4P0F A;  1YXA A;  1AS4 A;  1OYH L;  1K9O I;  3Q02 A;  4AJU A;  2H4Q A;  3FGQ A;  3CVM A;  4AU4 A;  3R4L A;  4CAA A;  2ARR A;  3PB1 I;  3H5C A;  5CE0 A;  8API A;  2ZV6 A;  2ACH A;  4R9I A;  4ZK3 A;  2WXZ C;  2WXY C;  1AZX I;  4AQH A;  1DVM A;  2XN3 A;  3NDF A;  5CDX A;  1SR5 A;  4ZK0 A;  5EI0 A;  3F02 A;  2PEE A;  7API A;  1R1L I;  2RIW A;  1ATT A;  1UHG A;  1BY7 A;  1JRR A;  1JTI A;  4KDS A;  5IO1 A;  3DRU A;  1DB2 A;  4P0O A;  3NDD A;  5HGC A;  1ATH A;  2B5T I;  1HLE A;  5BRR I;  4DTE A;  5C98 A;  4IC0 A;  4GA7 A;  1NQ9 I;  2V95 A;  1SNG A;  1WZ9 A;  1E04 I;  4AU3 A;  4C41 A;  2HI9 A;  1DZG I;  4YIA A;  1IZ2 A;  2VDY A;  3T1P A;  4DY7 C;  2HIJ I;  3STO A;  1JJO C;  3OZQ A;  2OL2 A;  1M93 B;  1OVA A;  2H4P A;  3F1S A;  2XN7 A;  4RO9 A;  2WXZ A;  2H4R A;  2HIJ L;  1QMB A;  4Y3K A;  2GD4 C;  1QLP A;  2CEO A;  4BB2 A;  1C8O A;  1KCT A;  2OAY A;  3CWM A;  1OPH A;  4PYW A;  1XQJ A;  4Y40 A;  2WY0 C;  1SEK A;  4G8R A;  1JVQ I;  2RIV A;  1ANT I;  1XQG A;  1EZX A;  1DZH I;  3EOX A;  2XN5 A;  3DLW A;  3Q03 A; 
#chains in the Genus database with same CATH topology
 2R9Y A;  1LQ8 A;  4ROA A;  1DZH L;  1A7C A;  2VDX A;  5CDZ A;  2PEF A;  1BR8 I;  1XU8 A;  4EB1 I;  3PZF A;  1OC0 A;  2VH4 A;  4AU3 B;  4RSQ A;  2WXW A;  3UT3 A;  3KCG I;  1DZG L;  1E05 I;  2B4X I;  1OO8 A;  9PAI A;  1OVA B;  1C5G A;  1JMJ A;  4DY0 A;  4AU2 A;  1OYH I;  2B4X L;  1B3K A;  2ANT I;  3NDA A;  1IMV A;  1JMO A;  2XN6 A;  3NE4 A;  4G8O A;  9API A;  2ZNH A;  1MTP A;  3EVJ I;  2DUT A;  5INW A;  4X30 A;  1DVN A;  4ROB A;  1HP7 A;  1LJ5 A;  2WXX A;  3LW2 A;  3ZHA A;  1OVA C;  1E03 I;  3VVJ A;  1F0C A;  1PSI A;  1LK6 I;  3CWL A;  3DY0 A;  2D26 A;  2WY1 A;  4AJT A;  1T1F A;  1QMN A;  4EB1 L;  3F5N A;  1ATU A;  3LE2 A;  1TB6 I;  1D5S A;  4IF8 A;  4AFX A;  2BEH I;  2ARQ A;  3B9F I;  3DRM A;  3CAA A;  2QUG A;  4C49 A;  2BEH L;  4P0F A;  1YXA A;  1AS4 A;  1OYH L;  1K9O I;  3Q02 A;  4AJU A;  2H4Q A;  3FGQ A;  3CVM A;  4AU4 A;  3R4L A;  4CAA A;  2ARR A;  3PB1 I;  3H5C A;  5CE0 A;  8API A;  2ZV6 A;  2ACH A;  4R9I A;  4ZK3 A;  2WXZ C;  2WXY C;  1AZX I;  4AQH A;  1DVM A;  2XN3 A;  3NDF A;  5CDX A;  1SR5 A;  4ZK0 A;  5EI0 A;  3F02 A;  2PEE A;  7API A;  1R1L I;  2RIW A;  1ATT A;  1UHG A;  1BY7 A;  1JRR A;  1JTI A;  4KDS A;  5IO1 A;  3DRU A;  1DB2 A;  4P0O A;  3NDD A;  5HGC A;  1ATH A;  2B5T I;  1HLE A;  5BRR I;  4DTE A;  5C98 A;  4IC0 A;  4GA7 A;  1NQ9 I;  2V95 A;  1SNG A;  1WZ9 A;  1E04 I;  4AU3 A;  4C41 A;  2HI9 A;  1DZG I;  4YIA A;  1IZ2 A;  2VDY A;  3T1P A;  4DY7 C;  2HIJ I;  3STO A;  1JJO C;  3OZQ A;  2OL2 A;  1M93 B;  1OVA A;  2H4P A;  3F1S A;  2XN7 A;  4RO9 A;  2WXZ A;  2H4R A;  2HIJ L;  1QMB A;  4Y3K A;  2GD4 C;  1QLP A;  2CEO A;  4BB2 A;  1C8O A;  1KCT A;  2OAY A;  3CWM A;  1OPH A;  4PYW A;  1XQJ A;  4Y40 A;  2WY0 C;  1SEK A;  4G8R A;  1JVQ I;  2RIV A;  1ANT I;  1XQG A;  1EZX A;  1DZH I;  3EOX A;  2XN5 A;  3DLW A;  3Q03 A; 
#chains in the Genus database with same CATH homology
 2R9Y A;  1LQ8 A;  4ROA A;  1DZH L;  1A7C A;  2VDX A;  5CDZ A;  2PEF A;  1BR8 I;  1XU8 A;  4EB1 I;  3PZF A;  1OC0 A;  2VH4 A;  4AU3 B;  4RSQ A;  2WXW A;  3UT3 A;  3KCG I;  1DZG L;  1E05 I;  2B4X I;  1OO8 A;  9PAI A;  1OVA B;  1C5G A;  1JMJ A;  4DY0 A;  4AU2 A;  1OYH I;  2B4X L;  1B3K A;  2ANT I;  3NDA A;  1IMV A;  1JMO A;  2XN6 A;  3NE4 A;  4G8O A;  9API A;  2ZNH A;  1MTP A;  3EVJ I;  2DUT A;  5INW A;  4X30 A;  1DVN A;  4ROB A;  1HP7 A;  1LJ5 A;  2WXX A;  3LW2 A;  3ZHA A;  1OVA C;  1E03 I;  3VVJ A;  1F0C A;  1PSI A;  1LK6 I;  3CWL A;  3DY0 A;  2D26 A;  2WY1 A;  4AJT A;  1T1F A;  1QMN A;  4EB1 L;  3F5N A;  1ATU A;  3LE2 A;  1TB6 I;  1D5S A;  4IF8 A;  4AFX A;  2BEH I;  2ARQ A;  3B9F I;  3DRM A;  3CAA A;  2QUG A;  4C49 A;  2BEH L;  4P0F A;  1YXA A;  1AS4 A;  1OYH L;  1K9O I;  3Q02 A;  4AJU A;  2H4Q A;  3FGQ A;  3CVM A;  4AU4 A;  3R4L A;  4CAA A;  2ARR A;  3PB1 I;  3H5C A;  5CE0 A;  8API A;  2ZV6 A;  2ACH A;  4R9I A;  4ZK3 A;  2WXZ C;  2WXY C;  1AZX I;  4AQH A;  1DVM A;  2XN3 A;  3NDF A;  5CDX A;  1SR5 A;  4ZK0 A;  5EI0 A;  3F02 A;  2PEE A;  7API A;  1R1L I;  2RIW A;  1ATT A;  1UHG A;  1BY7 A;  1JRR A;  1JTI A;  4KDS A;  5IO1 A;  3DRU A;  1DB2 A;  4P0O A;  3NDD A;  5HGC A;  1ATH A;  2B5T I;  1HLE A;  5BRR I;  4DTE A;  5C98 A;  4IC0 A;  4GA7 A;  1NQ9 I;  2V95 A;  1SNG A;  1WZ9 A;  1E04 I;  4AU3 A;  4C41 A;  2HI9 A;  1DZG I;  4YIA A;  1IZ2 A;  2VDY A;  3T1P A;  4DY7 C;  2HIJ I;  3STO A;  1JJO C;  3OZQ A;  2OL2 A;  1M93 B;  1OVA A;  2H4P A;  3F1S A;  2XN7 A;  4RO9 A;  2WXZ A;  2H4R A;  2HIJ L;  1QMB A;  4Y3K A;  2GD4 C;  1QLP A;  2CEO A;  4BB2 A;  1C8O A;  1KCT A;  2OAY A;  3CWM A;  1OPH A;  4PYW A;  1XQJ A;  4Y40 A;  2WY0 C;  1SEK A;  4G8R A;  1JVQ I;  2RIV A;  1ANT I;  1XQG A;  1EZX A;  1DZH I;  3EOX A;  2XN5 A;  3DLW A;  3Q03 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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