4ROBA

2.8a resolution structure of srpn2 (k198c) from anopheles gambiae
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
383
structure length
356
Chain Sequence
GPFQGQRQNEFDLMFVKEIFKNHNSNVVLSPFSVKILLTLIYEASDTSSNTKRELSSVIQNDNIDHTRSYYKQLLESAQQDNKDYDLNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSYSNPTQTAATINNWVSEHTNGRLREIVTPDSLEGAVITLVNVIYFCGLWTYPFPEVANNVKPFYGTRGKPTNAQYMEQNGQFYYDNSADLGAQILRLPYRGNKLAMYFILPNPDNTVNQVLDRINSASLHQALWYMEENEVNVTLPKFKFDFSEQLNEPLQQVGIREIFSQNASLPLLARGVRVSRIFQKAGITINELGSEAVQIFNANRPFIFFIEDETLGTMLFAGKIENPVF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Serpin 2
publication title 2.8A resolution structure of SRPN2 (K198C) from Anopheles gambiae
rcsb
source organism Anopheles gambiae
total genus 114
structure length 356
sequence length 383
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 4robA01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 4robA02
1YXAA 1OO8A 2B4XI 1JMOA 3LW2A 4Y40A 4P0FA 9APIA 3DRUA 8APIA 2HIJI 3DLWA 4P0OA 1BR8I 1LQ8A 1OYHL 1D5SA 2ACHA 1ANTI 1OYHI 3KCGI 2XN7A 4RSQA 5IO1A 2ANTI 3EOXA 1R1LI 1SEKA 2ZV6A 2DUTA 4R9IA 4GA7A 5INWA 4AQHA 4ROAA 1PSIA 2RIWA 5EI0A 5CE0A 4Y3KA 1MTPA 1M93B 1DZHL 5CDZA 4IF8A 4X30A 1AZXI 1ATTA 1QMBA 2VH4A 4CAAA 2HI9A 1WZ9A 4AJTA 3UT3A 3CVMA 1IMVA 3ZHAA 2ZNHA 2D26A 1LJ5A 2H4RA 4G8RA 4DY0A 5HGCA 9PAIA 3CWLA 1KCTA 2HIJL 1C5GA 3DY0A 4YIAA 1TB6I 3CWMA 1UHGA 3NDAA 4IC0A 7APIA 2CEOA 1E03I 1OC0A 4AJUA 1ATHA 3EVJI 1SNGA 2PEFA 2B5TI 2OAYA 3H5CA 5C98A 4EB1I 4ROBA 1AS4A 3VVJA 1F0CA 1LK6I 2XN6A 1OVAA 2V95A 1OVAB 2WY0C 3T1PA 1QMNA 1JVQI 5CDXA 4ZK3A 4BB2A 2H4PA 3F1SA 1XU8A 1OVAC 5BRRI 1JTIA 4ZK0A 2WXWA 2R9YA 1E04I 1BY7A 3F02A 1DVNA 1DZGL 1E05I 2BEHI 1DZGI 3PB1I 4AU4A 4C49A 4EB1L 3STOA 2VDXA 4G8OA 2WXZC 3FGQA 1HP7A 1HLEA 1DB2A 4AU3A 4KDSA 1JMJA 2ARRA 2WXYC 4AU3B 1SR5A 4DTEA 4AU2A 1T1FA 2WY1A 2XN5A 2ARQA 2OL2A 3CAAA 3R4LA 2QUGA 1C8OA 1DVMA 3NDDA 1K9OI 2GD4C 4PYWA 2WXZA 1JRRA 1B3KA 2WXXA 3LE2A 3Q02A 3B9FI 2BEHL 1XQGA 3OZQA 4C41A 3DRMA 4RO9A 4AFXA 2VDYA 3Q03A 2XN3A 2H4QA 1DZHI 1IZ2A 1QLPA 3NE4A 3NDFA 2RIVA 2PEEA 3F5NA 1OPHA 4DY7C 1JJOC 1ATUA 1NQ9I 1A7CA 3PZFA 1EZXA 2B4XL 1XQJA
chains in the Genus database with same CATH superfamily
1YXAA 1OO8A 2B4XI 1JMOA 3LW2A 4Y40A 4P0FA 9APIA 3DRUA 8APIA 2HIJI 3DLWA 4P0OA 1BR8I 1LQ8A 1OYHL 1D5SA 2ACHA 1ANTI 1OYHI 3KCGI 2XN7A 4RSQA 5IO1A 2ANTI 3EOXA 1R1LI 1SEKA 2ZV6A 2DUTA 4R9IA 4GA7A 5INWA 4AQHA 4ROAA 1PSIA 2RIWA 5EI0A 5CE0A 4Y3KA 1MTPA 1M93B 1DZHL 5CDZA 4IF8A 4X30A 1AZXI 1ATTA 1QMBA 2VH4A 4CAAA 2HI9A 1WZ9A 4AJTA 3UT3A 3CVMA 1IMVA 3ZHAA 2ZNHA 2D26A 1LJ5A 2H4RA 4G8RA 4DY0A 5HGCA 9PAIA 3CWLA 1KCTA 2HIJL 1C5GA 3DY0A 4YIAA 1TB6I 3CWMA 1UHGA 3NDAA 4IC0A 7APIA 2CEOA 1E03I 1OC0A 4AJUA 1ATHA 3EVJI 1SNGA 2PEFA 2B5TI 2OAYA 3H5CA 5C98A 4EB1I 4ROBA 1AS4A 3VVJA 1F0CA 1LK6I 2XN6A 1OVAA 2V95A 1OVAB 2WY0C 3T1PA 1QMNA 1JVQI 5CDXA 4ZK3A 4BB2A 2H4PA 3F1SA 1XU8A 1OVAC 5BRRI 1JTIA 4ZK0A 2WXWA 2R9YA 1E04I 1BY7A 3F02A 1DVNA 1DZGL 1E05I 2BEHI 1DZGI 3PB1I 4AU4A 4C49A 4EB1L 3STOA 2VDXA 4G8OA 2WXZC 3FGQA 1HP7A 1HLEA 1DB2A 4AU3A 4KDSA 1JMJA 2ARRA 2WXYC 4AU3B 1SR5A 4DTEA 4AU2A 1T1FA 2WY1A 2XN5A 2ARQA 2OL2A 3CAAA 3R4LA 2QUGA 1C8OA 1DVMA 3NDDA 1K9OI 2GD4C 4PYWA 2WXZA 1JRRA 1B3KA 2WXXA 3LE2A 3Q02A 3B9FI 2BEHL 1XQGA 3OZQA 4C41A 3DRMA 4RO9A 4AFXA 2VDYA 3Q03A 2XN3A 2H4QA 1DZHI 1IZ2A 1QLPA 3NE4A 3NDFA 2RIVA 2PEEA 3F5NA 1OPHA 4DY7C 1JJOC 1ATUA 1NQ9I 1A7CA 3PZFA 1EZXA 2B4XL 1XQJA
chains in the Genus database with same CATH topology
1YXAA 1OO8A 2B4XI 1JMOA 3LW2A 4Y40A 4P0FA 9APIA 3DRUA 8APIA 2HIJI 3DLWA 4P0OA 1BR8I 1LQ8A 1OYHL 1D5SA 2ACHA 1ANTI 1OYHI 3KCGI 2XN7A 4RSQA 5IO1A 2ANTI 3EOXA 1R1LI 1SEKA 2ZV6A 2DUTA 4R9IA 4GA7A 5INWA 4AQHA 4ROAA 1PSIA 2RIWA 5EI0A 5CE0A 4Y3KA 1MTPA 1M93B 1DZHL 5CDZA 4IF8A 4X30A 1AZXI 1ATTA 1QMBA 2VH4A 4CAAA 2HI9A 1WZ9A 4AJTA 3UT3A 3CVMA 1IMVA 3ZHAA 2ZNHA 2D26A 1LJ5A 2H4RA 4G8RA 4DY0A 5HGCA 9PAIA 3CWLA 1KCTA 2HIJL 1C5GA 3DY0A 4YIAA 1TB6I 3CWMA 1UHGA 3NDAA 4IC0A 7APIA 2CEOA 1E03I 1OC0A 4AJUA 1ATHA 3EVJI 1SNGA 2PEFA 2B5TI 2OAYA 3H5CA 5C98A 4EB1I 4ROBA 1AS4A 3VVJA 1F0CA 1LK6I 2XN6A 1OVAA 2V95A 1OVAB 2WY0C 3T1PA 1QMNA 1JVQI 5CDXA 4ZK3A 4BB2A 2H4PA 3F1SA 1XU8A 1OVAC 5BRRI 1JTIA 4ZK0A 2WXWA 2R9YA 1E04I 1BY7A 3F02A 1DVNA 1DZGL 1E05I 2BEHI 1DZGI 3PB1I 4AU4A 4C49A 4EB1L 3STOA 2VDXA 4G8OA 2WXZC 3FGQA 1HP7A 1HLEA 1DB2A 4AU3A 4KDSA 1JMJA 2ARRA 2WXYC 4AU3B 1SR5A 4DTEA 4AU2A 1T1FA 2WY1A 2XN5A 2ARQA 2OL2A 3CAAA 3R4LA 2QUGA 1C8OA 1DVMA 3NDDA 1K9OI 2GD4C 4PYWA 2WXZA 1JRRA 1B3KA 2WXXA 3LE2A 3Q02A 3B9FI 2BEHL 1XQGA 3OZQA 4C41A 3DRMA 4RO9A 4AFXA 2VDYA 3Q03A 2XN3A 2H4QA 1DZHI 1IZ2A 1QLPA 3NE4A 3NDFA 2RIVA 2PEEA 3F5NA 1OPHA 4DY7C 1JJOC 1ATUA 1NQ9I 1A7CA 3PZFA 1EZXA 2B4XL 1XQJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YXA A;  1OO8 A;  2B4X I;  1JMO A;  3LW2 A;  4Y40 A;  4P0F A;  9API A;  3DRU A;  8API A;  2HIJ I;  3DLW A;  4P0O A;  1BR8 I;  1LQ8 A;  1OYH L;  1D5S A;  2ACH A;  1ANT I;  1OYH I;  3KCG I;  2XN7 A;  4RSQ A;  5IO1 A;  2ANT I;  3EOX A;  1R1L I;  1SEK A;  2ZV6 A;  2DUT A;  4R9I A;  4GA7 A;  5INW A;  4AQH A;  4ROA A;  1PSI A;  2RIW A;  5EI0 A;  5CE0 A;  4Y3K A;  1MTP A;  1M93 B;  1DZH L;  5CDZ A;  4IF8 A;  4X30 A;  1AZX I;  1ATT A;  1QMB A;  2VH4 A;  4CAA A;  2HI9 A;  1WZ9 A;  4AJT A;  3UT3 A;  3CVM A;  1IMV A;  3ZHA A;  2ZNH A;  2D26 A;  1LJ5 A;  2H4R A;  4G8R A;  4DY0 A;  5HGC A;  9PAI A;  3CWL A;  1KCT A;  2HIJ L;  1C5G A;  3DY0 A;  4YIA A;  1TB6 I;  3CWM A;  1UHG A;  3NDA A;  4IC0 A;  7API A;  2CEO A;  1E03 I;  1OC0 A;  4AJU A;  1ATH A;  3EVJ I;  1SNG A;  2PEF A;  2B5T I;  2OAY A;  3H5C A;  5C98 A;  4EB1 I;  4ROB A;  1AS4 A;  3VVJ A;  1F0C A;  1LK6 I;  2XN6 A;  1OVA A;  2V95 A;  1OVA B;  2WY0 C;  3T1P A;  1QMN A;  1JVQ I;  5CDX A;  4ZK3 A;  4BB2 A;  2H4P A;  3F1S A;  1XU8 A;  1OVA C;  5BRR I;  1JTI A;  4ZK0 A;  2WXW A;  2R9Y A;  1E04 I;  1BY7 A;  3F02 A;  1DVN A;  1DZG L;  1E05 I;  2BEH I;  1DZG I;  3PB1 I;  4AU4 A;  4C49 A;  4EB1 L;  3STO A;  2VDX A;  4G8O A;  2WXZ C;  3FGQ A;  1HP7 A;  1HLE A;  1DB2 A;  4AU3 A;  4KDS A;  1JMJ A;  2ARR A;  2WXY C;  4AU3 B;  1SR5 A;  4DTE A;  4AU2 A;  1T1F A;  2WY1 A;  2XN5 A;  2ARQ A;  2OL2 A;  3CAA A;  3R4L A;  2QUG A;  1C8O A;  1DVM A;  3NDD A;  1K9O I;  2GD4 C;  4PYW A;  2WXZ A;  1JRR A;  1B3K A;  2WXX A;  3LE2 A;  3Q02 A;  3B9F I;  2BEH L;  1XQG A;  3OZQ A;  4C41 A;  3DRM A;  4RO9 A;  4AFX A;  2VDY A;  3Q03 A;  2XN3 A;  2H4Q A;  1DZH I;  1IZ2 A;  1QLP A;  3NE4 A;  3NDF A;  2RIV A;  2PEE A;  3F5N A;  1OPH A;  4DY7 C;  1JJO C;  1ATU A;  1NQ9 I;  1A7C A;  3PZF A;  1EZX A;  2B4X L;  1XQJ A; 
#chains in the Genus database with same CATH topology
 1YXA A;  1OO8 A;  2B4X I;  1JMO A;  3LW2 A;  4Y40 A;  4P0F A;  9API A;  3DRU A;  8API A;  2HIJ I;  3DLW A;  4P0O A;  1BR8 I;  1LQ8 A;  1OYH L;  1D5S A;  2ACH A;  1ANT I;  1OYH I;  3KCG I;  2XN7 A;  4RSQ A;  5IO1 A;  2ANT I;  3EOX A;  1R1L I;  1SEK A;  2ZV6 A;  2DUT A;  4R9I A;  4GA7 A;  5INW A;  4AQH A;  4ROA A;  1PSI A;  2RIW A;  5EI0 A;  5CE0 A;  4Y3K A;  1MTP A;  1M93 B;  1DZH L;  5CDZ A;  4IF8 A;  4X30 A;  1AZX I;  1ATT A;  1QMB A;  2VH4 A;  4CAA A;  2HI9 A;  1WZ9 A;  4AJT A;  3UT3 A;  3CVM A;  1IMV A;  3ZHA A;  2ZNH A;  2D26 A;  1LJ5 A;  2H4R A;  4G8R A;  4DY0 A;  5HGC A;  9PAI A;  3CWL A;  1KCT A;  2HIJ L;  1C5G A;  3DY0 A;  4YIA A;  1TB6 I;  3CWM A;  1UHG A;  3NDA A;  4IC0 A;  7API A;  2CEO A;  1E03 I;  1OC0 A;  4AJU A;  1ATH A;  3EVJ I;  1SNG A;  2PEF A;  2B5T I;  2OAY A;  3H5C A;  5C98 A;  4EB1 I;  4ROB A;  1AS4 A;  3VVJ A;  1F0C A;  1LK6 I;  2XN6 A;  1OVA A;  2V95 A;  1OVA B;  2WY0 C;  3T1P A;  1QMN A;  1JVQ I;  5CDX A;  4ZK3 A;  4BB2 A;  2H4P A;  3F1S A;  1XU8 A;  1OVA C;  5BRR I;  1JTI A;  4ZK0 A;  2WXW A;  2R9Y A;  1E04 I;  1BY7 A;  3F02 A;  1DVN A;  1DZG L;  1E05 I;  2BEH I;  1DZG I;  3PB1 I;  4AU4 A;  4C49 A;  4EB1 L;  3STO A;  2VDX A;  4G8O A;  2WXZ C;  3FGQ A;  1HP7 A;  1HLE A;  1DB2 A;  4AU3 A;  4KDS A;  1JMJ A;  2ARR A;  2WXY C;  4AU3 B;  1SR5 A;  4DTE A;  4AU2 A;  1T1F A;  2WY1 A;  2XN5 A;  2ARQ A;  2OL2 A;  3CAA A;  3R4L A;  2QUG A;  1C8O A;  1DVM A;  3NDD A;  1K9O I;  2GD4 C;  4PYW A;  2WXZ A;  1JRR A;  1B3K A;  2WXX A;  3LE2 A;  3Q02 A;  3B9F I;  2BEH L;  1XQG A;  3OZQ A;  4C41 A;  3DRM A;  4RO9 A;  4AFX A;  2VDY A;  3Q03 A;  2XN3 A;  2H4Q A;  1DZH I;  1IZ2 A;  1QLP A;  3NE4 A;  3NDF A;  2RIV A;  2PEE A;  3F5N A;  1OPH A;  4DY7 C;  1JJO C;  1ATU A;  1NQ9 I;  1A7C A;  3PZF A;  1EZX A;  2B4X L;  1XQJ A; 
#chains in the Genus database with same CATH homology
 1YXA A;  1OO8 A;  2B4X I;  1JMO A;  3LW2 A;  4Y40 A;  4P0F A;  9API A;  3DRU A;  8API A;  2HIJ I;  3DLW A;  4P0O A;  1BR8 I;  1LQ8 A;  1OYH L;  1D5S A;  2ACH A;  1ANT I;  1OYH I;  3KCG I;  2XN7 A;  4RSQ A;  5IO1 A;  2ANT I;  3EOX A;  1R1L I;  1SEK A;  2ZV6 A;  2DUT A;  4R9I A;  4GA7 A;  5INW A;  4AQH A;  4ROA A;  1PSI A;  2RIW A;  5EI0 A;  5CE0 A;  4Y3K A;  1MTP A;  1M93 B;  1DZH L;  5CDZ A;  4IF8 A;  4X30 A;  1AZX I;  1ATT A;  1QMB A;  2VH4 A;  4CAA A;  2HI9 A;  1WZ9 A;  4AJT A;  3UT3 A;  3CVM A;  1IMV A;  3ZHA A;  2ZNH A;  2D26 A;  1LJ5 A;  2H4R A;  4G8R A;  4DY0 A;  5HGC A;  9PAI A;  3CWL A;  1KCT A;  2HIJ L;  1C5G A;  3DY0 A;  4YIA A;  1TB6 I;  3CWM A;  1UHG A;  3NDA A;  4IC0 A;  7API A;  2CEO A;  1E03 I;  1OC0 A;  4AJU A;  1ATH A;  3EVJ I;  1SNG A;  2PEF A;  2B5T I;  2OAY A;  3H5C A;  5C98 A;  4EB1 I;  4ROB A;  1AS4 A;  3VVJ A;  1F0C A;  1LK6 I;  2XN6 A;  1OVA A;  2V95 A;  1OVA B;  2WY0 C;  3T1P A;  1QMN A;  1JVQ I;  5CDX A;  4ZK3 A;  4BB2 A;  2H4P A;  3F1S A;  1XU8 A;  1OVA C;  5BRR I;  1JTI A;  4ZK0 A;  2WXW A;  2R9Y A;  1E04 I;  1BY7 A;  3F02 A;  1DVN A;  1DZG L;  1E05 I;  2BEH I;  1DZG I;  3PB1 I;  4AU4 A;  4C49 A;  4EB1 L;  3STO A;  2VDX A;  4G8O A;  2WXZ C;  3FGQ A;  1HP7 A;  1HLE A;  1DB2 A;  4AU3 A;  4KDS A;  1JMJ A;  2ARR A;  2WXY C;  4AU3 B;  1SR5 A;  4DTE A;  4AU2 A;  1T1F A;  2WY1 A;  2XN5 A;  2ARQ A;  2OL2 A;  3CAA A;  3R4L A;  2QUG A;  1C8O A;  1DVM A;  3NDD A;  1K9O I;  2GD4 C;  4PYW A;  2WXZ A;  1JRR A;  1B3K A;  2WXX A;  3LE2 A;  3Q02 A;  3B9F I;  2BEH L;  1XQG A;  3OZQ A;  4C41 A;  3DRM A;  4RO9 A;  4AFX A;  2VDY A;  3Q03 A;  2XN3 A;  2H4Q A;  1DZH I;  1IZ2 A;  1QLP A;  3NE4 A;  3NDF A;  2RIV A;  2PEE A;  3F5N A;  1OPH A;  4DY7 C;  1JJO C;  1ATU A;  1NQ9 I;  1A7C A;  3PZF A;  1EZX A;  2B4X L;  1XQJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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