4RSQA

2.9a resolution structure of srpn2 (k198c/e359c) from anopheles gambiae
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
383
structure length
356
Chain Sequence
GPFQGQRQNEFDLMFVKEIFKNHNSNVVLSPFSVKILLTLIYEASDTSFGNTKRELSSVIQNDNIDHTRSYYKQLLESAQQDNKDYDLNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSYSNPTQTAATINNWVSEHTNGRLREIVTPDSLEGAVITLVNVIYFCGLWTYPFPEVNVKPFYGTRGKPTNAQYMEQNGQFYYDNSADLGAQILRLPYRGNKLAMYFILPNPDNTVNQVLDRINSASLHQALWYMEENEVNVTLPKFKFDFSEQLNEPLQQVGIREIFSQNASLPLLARGEVRVSRIFQKAGITINELGSCAVQIFNANRPFIFFIEDETLGTMLFAGKIENPVF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Serpin 2
publication title Structural and Inhibitory Effects of Hinge Loop Mutagenesis in Serpin-2 from the Malaria Vector Anopheles gambiae.
pubmed doi rcsb
source organism Anopheles gambiae
total genus 109
structure length 356
sequence length 383
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2014-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 4rsqA01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 4rsqA02
3FGQA 2ANTI 1UHGA 4C41A 1M93B 2WY0C 1OYHL 5HGCA 3F02A 1JMOA 3H5CA 3NDFA 4CAAA 7APIA 2VDXA 2WXYC 4P0FA 1OYHI 1AZXI 2XN5A 3EOXA 1ANTI 2XN3A 2B5TI 9PAIA 1BR8I 1DVNA 1JTIA 1XQGA 2XN7A 1E04I 2GD4C 1QLPA 2VDYA 1LJ5A 1QMBA 5CDZA 5CE0A 1F0CA 1R1LI 4AU3A 1E05I 1MTPA 5C98A 2D26A 3OZQA 1ATHA 1JMJA 3STOA 9APIA 3LE2A 2CEOA 4ZK3A 1PSIA 3LW2A 2XN6A 4EB1L 2R9YA 4IC0A 2ZNHA 1KCTA 3VVJA 4AJTA 1IZ2A 5INWA 3DRUA 4AQHA 1EZXA 4G8RA 1DVMA 2H4RA 1BY7A 4EB1I 4DY7C 2QUGA 1SNGA 3KCGI 4AU3B 2RIWA 5CDXA 2RIVA 4PYWA 1SR5A 4C49A 3B9FI 1IMVA 1LQ8A 2HIJL 2PEEA 3CWMA 1ATTA 3T1PA 3CVMA 2OAYA 8APIA 4BB2A 3Q03A 5IO1A 3DRMA 3R4LA 4DY0A 2H4QA 2VH4A 4AFXA 1OVAC 5BRRI 3PB1I 3CWLA 1OVAA 4RSQA 3EVJI 2BEHL 1AS4A 3CAAA 1QMNA 4ROAA 2ARQA 1YXAA 3NDDA 1JRRA 1TB6I 4IF8A 2WXXA 4ROBA 2ZV6A 1DB2A 2BEHI 1WZ9A 4Y40A 1XU8A 5EI0A 1C5GA 4YIAA 1DZHL 3NDAA 4R9IA 4RO9A 1NQ9I 1SEKA 2OL2A 1XQJA 4GA7A 4AJUA 4Y3KA 3F5NA 1ATUA 1OVAB 1E03I 1DZGL 1T1FA 1DZHI 4P0OA 3UT3A 1OC0A 4KDSA 2HIJI 2HI9A 4AU2A 2B4XL 4AU4A 2V95A 2PEFA 3PZFA 3Q02A 4X30A 1DZGI 2WXZC 3DLWA 3DY0A 4ZK0A 2ACHA 1K9OI 1OPHA 2WXZA 3F1SA 4G8OA 2B4XI 1C8OA 1JVQI 1JJOC 2WY1A 2H4PA 1OO8A 1A7CA 3ZHAA 3NE4A 1HLEA 1B3KA 2WXWA 2ARRA 4DTEA 1HP7A 1LK6I 1D5SA 2DUTA
chains in the Genus database with same CATH superfamily
3FGQA 2ANTI 1UHGA 4C41A 1M93B 2WY0C 1OYHL 5HGCA 3F02A 1JMOA 3H5CA 3NDFA 4CAAA 7APIA 2VDXA 2WXYC 4P0FA 1OYHI 1AZXI 2XN5A 3EOXA 1ANTI 2XN3A 2B5TI 9PAIA 1BR8I 1DVNA 1JTIA 1XQGA 2XN7A 1E04I 2GD4C 1QLPA 2VDYA 1LJ5A 1QMBA 5CDZA 5CE0A 1F0CA 1R1LI 4AU3A 1E05I 1MTPA 5C98A 2D26A 3OZQA 1ATHA 1JMJA 3STOA 9APIA 3LE2A 2CEOA 4ZK3A 1PSIA 3LW2A 2XN6A 4EB1L 2R9YA 4IC0A 2ZNHA 1KCTA 3VVJA 4AJTA 1IZ2A 5INWA 3DRUA 4AQHA 1EZXA 4G8RA 1DVMA 2H4RA 1BY7A 4EB1I 4DY7C 2QUGA 1SNGA 3KCGI 4AU3B 2RIWA 5CDXA 2RIVA 4PYWA 1SR5A 4C49A 3B9FI 1IMVA 1LQ8A 2HIJL 2PEEA 3CWMA 1ATTA 3T1PA 3CVMA 2OAYA 8APIA 4BB2A 3Q03A 5IO1A 3DRMA 3R4LA 4DY0A 2H4QA 2VH4A 4AFXA 1OVAC 5BRRI 3PB1I 3CWLA 1OVAA 4RSQA 3EVJI 2BEHL 1AS4A 3CAAA 1QMNA 4ROAA 2ARQA 1YXAA 3NDDA 1JRRA 1TB6I 4IF8A 2WXXA 4ROBA 2ZV6A 1DB2A 2BEHI 1WZ9A 4Y40A 1XU8A 5EI0A 1C5GA 4YIAA 1DZHL 3NDAA 4R9IA 4RO9A 1NQ9I 1SEKA 2OL2A 1XQJA 4GA7A 4AJUA 4Y3KA 3F5NA 1ATUA 1OVAB 1E03I 1DZGL 1T1FA 1DZHI 4P0OA 3UT3A 1OC0A 4KDSA 2HIJI 2HI9A 4AU2A 2B4XL 4AU4A 2V95A 2PEFA 3PZFA 3Q02A 4X30A 1DZGI 2WXZC 3DLWA 3DY0A 4ZK0A 2ACHA 1K9OI 1OPHA 2WXZA 3F1SA 4G8OA 2B4XI 1C8OA 1JVQI 1JJOC 2WY1A 2H4PA 1OO8A 1A7CA 3ZHAA 3NE4A 1HLEA 1B3KA 2WXWA 2ARRA 4DTEA 1HP7A 1LK6I 1D5SA 2DUTA
chains in the Genus database with same CATH topology
3FGQA 2ANTI 1UHGA 4C41A 1M93B 2WY0C 1OYHL 5HGCA 3F02A 1JMOA 3H5CA 3NDFA 4CAAA 7APIA 2VDXA 2WXYC 4P0FA 1OYHI 1AZXI 2XN5A 3EOXA 1ANTI 2XN3A 2B5TI 9PAIA 1BR8I 1DVNA 1JTIA 1XQGA 2XN7A 1E04I 2GD4C 1QLPA 2VDYA 1LJ5A 1QMBA 5CDZA 5CE0A 1F0CA 1R1LI 4AU3A 1E05I 1MTPA 5C98A 2D26A 3OZQA 1ATHA 1JMJA 3STOA 9APIA 3LE2A 2CEOA 4ZK3A 1PSIA 3LW2A 2XN6A 4EB1L 2R9YA 4IC0A 2ZNHA 1KCTA 3VVJA 4AJTA 1IZ2A 5INWA 3DRUA 4AQHA 1EZXA 4G8RA 1DVMA 2H4RA 1BY7A 4EB1I 4DY7C 2QUGA 1SNGA 3KCGI 4AU3B 2RIWA 5CDXA 2RIVA 4PYWA 1SR5A 4C49A 3B9FI 1IMVA 1LQ8A 2HIJL 2PEEA 3CWMA 1ATTA 3T1PA 3CVMA 2OAYA 8APIA 4BB2A 3Q03A 5IO1A 3DRMA 3R4LA 4DY0A 2H4QA 2VH4A 4AFXA 1OVAC 5BRRI 3PB1I 3CWLA 1OVAA 4RSQA 3EVJI 2BEHL 1AS4A 3CAAA 1QMNA 4ROAA 2ARQA 1YXAA 3NDDA 1JRRA 1TB6I 4IF8A 2WXXA 4ROBA 2ZV6A 1DB2A 2BEHI 1WZ9A 4Y40A 1XU8A 5EI0A 1C5GA 4YIAA 1DZHL 3NDAA 4R9IA 4RO9A 1NQ9I 1SEKA 2OL2A 1XQJA 4GA7A 4AJUA 4Y3KA 3F5NA 1ATUA 1OVAB 1E03I 1DZGL 1T1FA 1DZHI 4P0OA 3UT3A 1OC0A 4KDSA 2HIJI 2HI9A 4AU2A 2B4XL 4AU4A 2V95A 2PEFA 3PZFA 3Q02A 4X30A 1DZGI 2WXZC 3DLWA 3DY0A 4ZK0A 2ACHA 1K9OI 1OPHA 2WXZA 3F1SA 4G8OA 2B4XI 1C8OA 1JVQI 1JJOC 2WY1A 2H4PA 1OO8A 1A7CA 3ZHAA 3NE4A 1HLEA 1B3KA 2WXWA 2ARRA 4DTEA 1HP7A 1LK6I 1D5SA 2DUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FGQ A;  2ANT I;  1UHG A;  4C41 A;  1M93 B;  2WY0 C;  1OYH L;  5HGC A;  3F02 A;  1JMO A;  3H5C A;  3NDF A;  4CAA A;  7API A;  2VDX A;  2WXY C;  4P0F A;  1OYH I;  1AZX I;  2XN5 A;  3EOX A;  1ANT I;  2XN3 A;  2B5T I;  9PAI A;  1BR8 I;  1DVN A;  1JTI A;  1XQG A;  2XN7 A;  1E04 I;  2GD4 C;  1QLP A;  2VDY A;  1LJ5 A;  1QMB A;  5CDZ A;  5CE0 A;  1F0C A;  1R1L I;  4AU3 A;  1E05 I;  1MTP A;  5C98 A;  2D26 A;  3OZQ A;  1ATH A;  1JMJ A;  3STO A;  9API A;  3LE2 A;  2CEO A;  4ZK3 A;  1PSI A;  3LW2 A;  2XN6 A;  4EB1 L;  2R9Y A;  4IC0 A;  2ZNH A;  1KCT A;  3VVJ A;  4AJT A;  1IZ2 A;  5INW A;  3DRU A;  4AQH A;  1EZX A;  4G8R A;  1DVM A;  2H4R A;  1BY7 A;  4EB1 I;  4DY7 C;  2QUG A;  1SNG A;  3KCG I;  4AU3 B;  2RIW A;  5CDX A;  2RIV A;  4PYW A;  1SR5 A;  4C49 A;  3B9F I;  1IMV A;  1LQ8 A;  2HIJ L;  2PEE A;  3CWM A;  1ATT A;  3T1P A;  3CVM A;  2OAY A;  8API A;  4BB2 A;  3Q03 A;  5IO1 A;  3DRM A;  3R4L A;  4DY0 A;  2H4Q A;  2VH4 A;  4AFX A;  1OVA C;  5BRR I;  3PB1 I;  3CWL A;  1OVA A;  4RSQ A;  3EVJ I;  2BEH L;  1AS4 A;  3CAA A;  1QMN A;  4ROA A;  2ARQ A;  1YXA A;  3NDD A;  1JRR A;  1TB6 I;  4IF8 A;  2WXX A;  4ROB A;  2ZV6 A;  1DB2 A;  2BEH I;  1WZ9 A;  4Y40 A;  1XU8 A;  5EI0 A;  1C5G A;  4YIA A;  1DZH L;  3NDA A;  4R9I A;  4RO9 A;  1NQ9 I;  1SEK A;  2OL2 A;  1XQJ A;  4GA7 A;  4AJU A;  4Y3K A;  3F5N A;  1ATU A;  1OVA B;  1E03 I;  1DZG L;  1T1F A;  1DZH I;  4P0O A;  3UT3 A;  1OC0 A;  4KDS A;  2HIJ I;  2HI9 A;  4AU2 A;  2B4X L;  4AU4 A;  2V95 A;  2PEF A;  3PZF A;  3Q02 A;  4X30 A;  1DZG I;  2WXZ C;  3DLW A;  3DY0 A;  4ZK0 A;  2ACH A;  1K9O I;  1OPH A;  2WXZ A;  3F1S A;  4G8O A;  2B4X I;  1C8O A;  1JVQ I;  1JJO C;  2WY1 A;  2H4P A;  1OO8 A;  1A7C A;  3ZHA A;  3NE4 A;  1HLE A;  1B3K A;  2WXW A;  2ARR A;  4DTE A;  1HP7 A;  1LK6 I;  1D5S A;  2DUT A; 
#chains in the Genus database with same CATH topology
 3FGQ A;  2ANT I;  1UHG A;  4C41 A;  1M93 B;  2WY0 C;  1OYH L;  5HGC A;  3F02 A;  1JMO A;  3H5C A;  3NDF A;  4CAA A;  7API A;  2VDX A;  2WXY C;  4P0F A;  1OYH I;  1AZX I;  2XN5 A;  3EOX A;  1ANT I;  2XN3 A;  2B5T I;  9PAI A;  1BR8 I;  1DVN A;  1JTI A;  1XQG A;  2XN7 A;  1E04 I;  2GD4 C;  1QLP A;  2VDY A;  1LJ5 A;  1QMB A;  5CDZ A;  5CE0 A;  1F0C A;  1R1L I;  4AU3 A;  1E05 I;  1MTP A;  5C98 A;  2D26 A;  3OZQ A;  1ATH A;  1JMJ A;  3STO A;  9API A;  3LE2 A;  2CEO A;  4ZK3 A;  1PSI A;  3LW2 A;  2XN6 A;  4EB1 L;  2R9Y A;  4IC0 A;  2ZNH A;  1KCT A;  3VVJ A;  4AJT A;  1IZ2 A;  5INW A;  3DRU A;  4AQH A;  1EZX A;  4G8R A;  1DVM A;  2H4R A;  1BY7 A;  4EB1 I;  4DY7 C;  2QUG A;  1SNG A;  3KCG I;  4AU3 B;  2RIW A;  5CDX A;  2RIV A;  4PYW A;  1SR5 A;  4C49 A;  3B9F I;  1IMV A;  1LQ8 A;  2HIJ L;  2PEE A;  3CWM A;  1ATT A;  3T1P A;  3CVM A;  2OAY A;  8API A;  4BB2 A;  3Q03 A;  5IO1 A;  3DRM A;  3R4L A;  4DY0 A;  2H4Q A;  2VH4 A;  4AFX A;  1OVA C;  5BRR I;  3PB1 I;  3CWL A;  1OVA A;  4RSQ A;  3EVJ I;  2BEH L;  1AS4 A;  3CAA A;  1QMN A;  4ROA A;  2ARQ A;  1YXA A;  3NDD A;  1JRR A;  1TB6 I;  4IF8 A;  2WXX A;  4ROB A;  2ZV6 A;  1DB2 A;  2BEH I;  1WZ9 A;  4Y40 A;  1XU8 A;  5EI0 A;  1C5G A;  4YIA A;  1DZH L;  3NDA A;  4R9I A;  4RO9 A;  1NQ9 I;  1SEK A;  2OL2 A;  1XQJ A;  4GA7 A;  4AJU A;  4Y3K A;  3F5N A;  1ATU A;  1OVA B;  1E03 I;  1DZG L;  1T1F A;  1DZH I;  4P0O A;  3UT3 A;  1OC0 A;  4KDS A;  2HIJ I;  2HI9 A;  4AU2 A;  2B4X L;  4AU4 A;  2V95 A;  2PEF A;  3PZF A;  3Q02 A;  4X30 A;  1DZG I;  2WXZ C;  3DLW A;  3DY0 A;  4ZK0 A;  2ACH A;  1K9O I;  1OPH A;  2WXZ A;  3F1S A;  4G8O A;  2B4X I;  1C8O A;  1JVQ I;  1JJO C;  2WY1 A;  2H4P A;  1OO8 A;  1A7C A;  3ZHA A;  3NE4 A;  1HLE A;  1B3K A;  2WXW A;  2ARR A;  4DTE A;  1HP7 A;  1LK6 I;  1D5S A;  2DUT A; 
#chains in the Genus database with same CATH homology
 3FGQ A;  2ANT I;  1UHG A;  4C41 A;  1M93 B;  2WY0 C;  1OYH L;  5HGC A;  3F02 A;  1JMO A;  3H5C A;  3NDF A;  4CAA A;  7API A;  2VDX A;  2WXY C;  4P0F A;  1OYH I;  1AZX I;  2XN5 A;  3EOX A;  1ANT I;  2XN3 A;  2B5T I;  9PAI A;  1BR8 I;  1DVN A;  1JTI A;  1XQG A;  2XN7 A;  1E04 I;  2GD4 C;  1QLP A;  2VDY A;  1LJ5 A;  1QMB A;  5CDZ A;  5CE0 A;  1F0C A;  1R1L I;  4AU3 A;  1E05 I;  1MTP A;  5C98 A;  2D26 A;  3OZQ A;  1ATH A;  1JMJ A;  3STO A;  9API A;  3LE2 A;  2CEO A;  4ZK3 A;  1PSI A;  3LW2 A;  2XN6 A;  4EB1 L;  2R9Y A;  4IC0 A;  2ZNH A;  1KCT A;  3VVJ A;  4AJT A;  1IZ2 A;  5INW A;  3DRU A;  4AQH A;  1EZX A;  4G8R A;  1DVM A;  2H4R A;  1BY7 A;  4EB1 I;  4DY7 C;  2QUG A;  1SNG A;  3KCG I;  4AU3 B;  2RIW A;  5CDX A;  2RIV A;  4PYW A;  1SR5 A;  4C49 A;  3B9F I;  1IMV A;  1LQ8 A;  2HIJ L;  2PEE A;  3CWM A;  1ATT A;  3T1P A;  3CVM A;  2OAY A;  8API A;  4BB2 A;  3Q03 A;  5IO1 A;  3DRM A;  3R4L A;  4DY0 A;  2H4Q A;  2VH4 A;  4AFX A;  1OVA C;  5BRR I;  3PB1 I;  3CWL A;  1OVA A;  4RSQ A;  3EVJ I;  2BEH L;  1AS4 A;  3CAA A;  1QMN A;  4ROA A;  2ARQ A;  1YXA A;  3NDD A;  1JRR A;  1TB6 I;  4IF8 A;  2WXX A;  4ROB A;  2ZV6 A;  1DB2 A;  2BEH I;  1WZ9 A;  4Y40 A;  1XU8 A;  5EI0 A;  1C5G A;  4YIA A;  1DZH L;  3NDA A;  4R9I A;  4RO9 A;  1NQ9 I;  1SEK A;  2OL2 A;  1XQJ A;  4GA7 A;  4AJU A;  4Y3K A;  3F5N A;  1ATU A;  1OVA B;  1E03 I;  1DZG L;  1T1F A;  1DZH I;  4P0O A;  3UT3 A;  1OC0 A;  4KDS A;  2HIJ I;  2HI9 A;  4AU2 A;  2B4X L;  4AU4 A;  2V95 A;  2PEF A;  3PZF A;  3Q02 A;  4X30 A;  1DZG I;  2WXZ C;  3DLW A;  3DY0 A;  4ZK0 A;  2ACH A;  1K9O I;  1OPH A;  2WXZ A;  3F1S A;  4G8O A;  2B4X I;  1C8O A;  1JVQ I;  1JJO C;  2WY1 A;  2H4P A;  1OO8 A;  1A7C A;  3ZHA A;  3NE4 A;  1HLE A;  1B3K A;  2WXW A;  2ARR A;  4DTE A;  1HP7 A;  1LK6 I;  1D5S A;  2DUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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