5CDXA

Crystal structure of conserpin
Total Genus 102
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
366
structure length
353
Chain Sequence
QGAASSHKLAEANTDFAFSLYRELAKSSPDKNIFFSPVSISSALAMLSLGAKGDTHTQILEGLGFNSEADIHQGFQHLLQTLNRPKGLQLKTANGLFVDKSLKLLDSFLEDSKKLYQAEAFSVDFDPEEAKKQINDWVEKQTNGKIKDLLKDLDSDTVLVLVNAIYFKGKWKKPFDPENTKEEDFHVDEKTTVKVPMMSQKGKFYYYHDDELSCKVLELPYKGNASMLIILPDEGGLQHLEQSLTPETLSKWLKSLTRRSVELYLPKFKIEGTYDLKEVLSNLGITDLFSPGADLSGITEEKLYVSKAVHKAVLEVNEEGTSPPEFKADRPFLFLIRENKTGSILFMGKVVNP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase inhibitor
molecule keywords Conserpin
publication title Smoothing a rugged protein folding landscape by sequence-based redesign.
pubmed doi rcsb
source organism Synthetic construct
total genus 102
structure length 353
sequence length 366
ec nomenclature
pdb deposition date 2015-07-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 5cdxA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 5cdxA01
3Q03A 1C8OA 3H5CA 1QLPA 1E04I 1DVMA 2WXZA 3LE2A 2H4QA 3NDAA 1DZHI 1DVNA 2H4PA 2H4RA 4AU3B 1WZ9A 3DRUA 2ZV6A 1DZHL 1UHGA 1IMVA 2R9YA 4KDSA 1M93B 4DY0A 3CAAA 2ZNHA 2ACHA 4AFXA 2HIJI 3B9FI 3PB1I 7APIA 3T1PA 2QUGA 3F02A 1JTIA 4CAAA 1AZXI 1OVAA 4IF8A 1SR5A 1JVQI 1BR8I 3UT3A 1DZGI 1XQJA 4AJTA 4R9IA 2XN5A 1DZGL 1SEKA 1OYHI 2ANTI 3OZQA 1ATHA 1JMOA 2BEHI 1QMBA 2WY0C 4X30A 4ROBA 1ATTA 3CWLA 2BEHL 3Q02A 4AQHA 4G8OA 4AU4A 2ARRA 2WXZC 3EOXA 4C49A 5CDXA 2B5TI 1B3KA 2V95A 1E05I 4P0FA 1TB6I 9PAIA 4PYWA 5BRRI 2OAYA 1BY7A 2HIJL 4DY7C 5C98A 4P0OA 5INWA 1XU8A 2WXYC 2PEFA 4EB1I 5IO1A 4ZK0A 5EI0A 5HGCA 4GA7A 1K9OI 4AU3A 4EB1L 4G8RA 1HLEA 4Y40A 1D5SA 1IZ2A 3CVMA 3STOA 1XQGA 1JMJA 1OYHL 3FGQA 3ZHAA 3DRMA 1OVAB 3LW2A 4ROAA 1EZXA 1OVAC 2VDXA 2WXXA 1QMNA 2D26A 4Y3KA 2WXWA 4AJUA 2XN7A 1HP7A 1LQ8A 8APIA 1YXAA 1LK6I 4YIAA 3EVJI 1DB2A 1R1LI 3KCGI 2XN3A 2HI9A 2VH4A 3PZFA 2ARQA 1JRRA 3CWMA 3VVJA 1JJOC 3NDDA 1SNGA 2WY1A 5CDZA 1F0CA 1NQ9I 1C5GA 4AU2A 4ZK3A 3DLWA 3NE4A 2XN6A 1A7CA 3NDFA 2OL2A 1OO8A 2RIVA 4IC0A 2PEEA 1ANTI 2CEOA 2DUTA 1KCTA 3F5NA 4RSQA 3R4LA 1E03I 2GD4C 3DY0A 1OPHA 1PSIA 1LJ5A 4C41A 5CE0A 4RO9A 4BB2A 1T1FA 2RIWA 9APIA 4DTEA 2B4XI 1MTPA 2VDYA 1ATUA 1OC0A 2B4XL 1AS4A 3F1SA
chains in the Genus database with same CATH superfamily
3Q03A 1C8OA 3H5CA 1QLPA 1E04I 1DVMA 2WXZA 3LE2A 2H4QA 3NDAA 1DZHI 1DVNA 2H4PA 2H4RA 4AU3B 1WZ9A 3DRUA 2ZV6A 1DZHL 1UHGA 1IMVA 2R9YA 4KDSA 1M93B 4DY0A 3CAAA 2ZNHA 2ACHA 4AFXA 2HIJI 3B9FI 3PB1I 7APIA 3T1PA 2QUGA 3F02A 1JTIA 4CAAA 1AZXI 1OVAA 4IF8A 1SR5A 1JVQI 1BR8I 3UT3A 1DZGI 1XQJA 4AJTA 4R9IA 2XN5A 1DZGL 1SEKA 1OYHI 2ANTI 3OZQA 1ATHA 1JMOA 2BEHI 1QMBA 2WY0C 4X30A 4ROBA 1ATTA 3CWLA 2BEHL 3Q02A 4AQHA 4G8OA 4AU4A 2ARRA 2WXZC 3EOXA 4C49A 5CDXA 2B5TI 1B3KA 2V95A 1E05I 4P0FA 1TB6I 9PAIA 4PYWA 5BRRI 2OAYA 1BY7A 2HIJL 4DY7C 5C98A 4P0OA 5INWA 1XU8A 2WXYC 2PEFA 4EB1I 5IO1A 4ZK0A 5EI0A 5HGCA 4GA7A 1K9OI 4AU3A 4EB1L 4G8RA 1HLEA 4Y40A 1D5SA 1IZ2A 3CVMA 3STOA 1XQGA 1JMJA 1OYHL 3FGQA 3ZHAA 3DRMA 1OVAB 3LW2A 4ROAA 1EZXA 1OVAC 2VDXA 2WXXA 1QMNA 2D26A 4Y3KA 2WXWA 4AJUA 2XN7A 1HP7A 1LQ8A 8APIA 1YXAA 1LK6I 4YIAA 3EVJI 1DB2A 1R1LI 3KCGI 2XN3A 2HI9A 2VH4A 3PZFA 2ARQA 1JRRA 3CWMA 3VVJA 1JJOC 3NDDA 1SNGA 2WY1A 5CDZA 1F0CA 1NQ9I 1C5GA 4AU2A 4ZK3A 3DLWA 3NE4A 2XN6A 1A7CA 3NDFA 2OL2A 1OO8A 2RIVA 4IC0A 2PEEA 1ANTI 2CEOA 2DUTA 1KCTA 3F5NA 4RSQA 3R4LA 1E03I 2GD4C 3DY0A 1OPHA 1PSIA 1LJ5A 4C41A 5CE0A 4RO9A 4BB2A 1T1FA 2RIWA 9APIA 4DTEA 2B4XI 1MTPA 2VDYA 1ATUA 1OC0A 2B4XL 1AS4A 3F1SA
chains in the Genus database with same CATH topology
3Q03A 1C8OA 3H5CA 1QLPA 1E04I 1DVMA 2WXZA 3LE2A 2H4QA 3NDAA 1DZHI 1DVNA 2H4PA 2H4RA 4AU3B 1WZ9A 3DRUA 2ZV6A 1DZHL 1UHGA 1IMVA 2R9YA 4KDSA 1M93B 4DY0A 3CAAA 2ZNHA 2ACHA 4AFXA 2HIJI 3B9FI 3PB1I 7APIA 3T1PA 2QUGA 3F02A 1JTIA 4CAAA 1AZXI 1OVAA 4IF8A 1SR5A 1JVQI 1BR8I 3UT3A 1DZGI 1XQJA 4AJTA 4R9IA 2XN5A 1DZGL 1SEKA 1OYHI 2ANTI 3OZQA 1ATHA 1JMOA 2BEHI 1QMBA 2WY0C 4X30A 4ROBA 1ATTA 3CWLA 2BEHL 3Q02A 4AQHA 4G8OA 4AU4A 2ARRA 2WXZC 3EOXA 4C49A 5CDXA 2B5TI 1B3KA 2V95A 1E05I 4P0FA 1TB6I 9PAIA 4PYWA 5BRRI 2OAYA 1BY7A 2HIJL 4DY7C 5C98A 4P0OA 5INWA 1XU8A 2WXYC 2PEFA 4EB1I 5IO1A 4ZK0A 5EI0A 5HGCA 4GA7A 1K9OI 4AU3A 4EB1L 4G8RA 1HLEA 4Y40A 1D5SA 1IZ2A 3CVMA 3STOA 1XQGA 1JMJA 1OYHL 3FGQA 3ZHAA 3DRMA 1OVAB 3LW2A 4ROAA 1EZXA 1OVAC 2VDXA 2WXXA 1QMNA 2D26A 4Y3KA 2WXWA 4AJUA 2XN7A 1HP7A 1LQ8A 8APIA 1YXAA 1LK6I 4YIAA 3EVJI 1DB2A 1R1LI 3KCGI 2XN3A 2HI9A 2VH4A 3PZFA 2ARQA 1JRRA 3CWMA 3VVJA 1JJOC 3NDDA 1SNGA 2WY1A 5CDZA 1F0CA 1NQ9I 1C5GA 4AU2A 4ZK3A 3DLWA 3NE4A 2XN6A 1A7CA 3NDFA 2OL2A 1OO8A 2RIVA 4IC0A 2PEEA 1ANTI 2CEOA 2DUTA 1KCTA 3F5NA 4RSQA 3R4LA 1E03I 2GD4C 3DY0A 1OPHA 1PSIA 1LJ5A 4C41A 5CE0A 4RO9A 4BB2A 1T1FA 2RIWA 9APIA 4DTEA 2B4XI 1MTPA 2VDYA 1ATUA 1OC0A 2B4XL 1AS4A 3F1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q03 A;  1C8O A;  3H5C A;  1QLP A;  1E04 I;  1DVM A;  2WXZ A;  3LE2 A;  2H4Q A;  3NDA A;  1DZH I;  1DVN A;  2H4P A;  2H4R A;  4AU3 B;  1WZ9 A;  3DRU A;  2ZV6 A;  1DZH L;  1UHG A;  1IMV A;  2R9Y A;  4KDS A;  1M93 B;  4DY0 A;  3CAA A;  2ZNH A;  2ACH A;  4AFX A;  2HIJ I;  3B9F I;  3PB1 I;  7API A;  3T1P A;  2QUG A;  3F02 A;  1JTI A;  4CAA A;  1AZX I;  1OVA A;  4IF8 A;  1SR5 A;  1JVQ I;  1BR8 I;  3UT3 A;  1DZG I;  1XQJ A;  4AJT A;  4R9I A;  2XN5 A;  1DZG L;  1SEK A;  1OYH I;  2ANT I;  3OZQ A;  1ATH A;  1JMO A;  2BEH I;  1QMB A;  2WY0 C;  4X30 A;  4ROB A;  1ATT A;  3CWL A;  2BEH L;  3Q02 A;  4AQH A;  4G8O A;  4AU4 A;  2ARR A;  2WXZ C;  3EOX A;  4C49 A;  5CDX A;  2B5T I;  1B3K A;  2V95 A;  1E05 I;  4P0F A;  1TB6 I;  9PAI A;  4PYW A;  5BRR I;  2OAY A;  1BY7 A;  2HIJ L;  4DY7 C;  5C98 A;  4P0O A;  5INW A;  1XU8 A;  2WXY C;  2PEF A;  4EB1 I;  5IO1 A;  4ZK0 A;  5EI0 A;  5HGC A;  4GA7 A;  1K9O I;  4AU3 A;  4EB1 L;  4G8R A;  1HLE A;  4Y40 A;  1D5S A;  1IZ2 A;  3CVM A;  3STO A;  1XQG A;  1JMJ A;  1OYH L;  3FGQ A;  3ZHA A;  3DRM A;  1OVA B;  3LW2 A;  4ROA A;  1EZX A;  1OVA C;  2VDX A;  2WXX A;  1QMN A;  2D26 A;  4Y3K A;  2WXW A;  4AJU A;  2XN7 A;  1HP7 A;  1LQ8 A;  8API A;  1YXA A;  1LK6 I;  4YIA A;  3EVJ I;  1DB2 A;  1R1L I;  3KCG I;  2XN3 A;  2HI9 A;  2VH4 A;  3PZF A;  2ARQ A;  1JRR A;  3CWM A;  3VVJ A;  1JJO C;  3NDD A;  1SNG A;  2WY1 A;  5CDZ A;  1F0C A;  1NQ9 I;  1C5G A;  4AU2 A;  4ZK3 A;  3DLW A;  3NE4 A;  2XN6 A;  1A7C A;  3NDF A;  2OL2 A;  1OO8 A;  2RIV A;  4IC0 A;  2PEE A;  1ANT I;  2CEO A;  2DUT A;  1KCT A;  3F5N A;  4RSQ A;  3R4L A;  1E03 I;  2GD4 C;  3DY0 A;  1OPH A;  1PSI A;  1LJ5 A;  4C41 A;  5CE0 A;  4RO9 A;  4BB2 A;  1T1F A;  2RIW A;  9API A;  4DTE A;  2B4X I;  1MTP A;  2VDY A;  1ATU A;  1OC0 A;  2B4X L;  1AS4 A;  3F1S A; 
#chains in the Genus database with same CATH topology
 3Q03 A;  1C8O A;  3H5C A;  1QLP A;  1E04 I;  1DVM A;  2WXZ A;  3LE2 A;  2H4Q A;  3NDA A;  1DZH I;  1DVN A;  2H4P A;  2H4R A;  4AU3 B;  1WZ9 A;  3DRU A;  2ZV6 A;  1DZH L;  1UHG A;  1IMV A;  2R9Y A;  4KDS A;  1M93 B;  4DY0 A;  3CAA A;  2ZNH A;  2ACH A;  4AFX A;  2HIJ I;  3B9F I;  3PB1 I;  7API A;  3T1P A;  2QUG A;  3F02 A;  1JTI A;  4CAA A;  1AZX I;  1OVA A;  4IF8 A;  1SR5 A;  1JVQ I;  1BR8 I;  3UT3 A;  1DZG I;  1XQJ A;  4AJT A;  4R9I A;  2XN5 A;  1DZG L;  1SEK A;  1OYH I;  2ANT I;  3OZQ A;  1ATH A;  1JMO A;  2BEH I;  1QMB A;  2WY0 C;  4X30 A;  4ROB A;  1ATT A;  3CWL A;  2BEH L;  3Q02 A;  4AQH A;  4G8O A;  4AU4 A;  2ARR A;  2WXZ C;  3EOX A;  4C49 A;  5CDX A;  2B5T I;  1B3K A;  2V95 A;  1E05 I;  4P0F A;  1TB6 I;  9PAI A;  4PYW A;  5BRR I;  2OAY A;  1BY7 A;  2HIJ L;  4DY7 C;  5C98 A;  4P0O A;  5INW A;  1XU8 A;  2WXY C;  2PEF A;  4EB1 I;  5IO1 A;  4ZK0 A;  5EI0 A;  5HGC A;  4GA7 A;  1K9O I;  4AU3 A;  4EB1 L;  4G8R A;  1HLE A;  4Y40 A;  1D5S A;  1IZ2 A;  3CVM A;  3STO A;  1XQG A;  1JMJ A;  1OYH L;  3FGQ A;  3ZHA A;  3DRM A;  1OVA B;  3LW2 A;  4ROA A;  1EZX A;  1OVA C;  2VDX A;  2WXX A;  1QMN A;  2D26 A;  4Y3K A;  2WXW A;  4AJU A;  2XN7 A;  1HP7 A;  1LQ8 A;  8API A;  1YXA A;  1LK6 I;  4YIA A;  3EVJ I;  1DB2 A;  1R1L I;  3KCG I;  2XN3 A;  2HI9 A;  2VH4 A;  3PZF A;  2ARQ A;  1JRR A;  3CWM A;  3VVJ A;  1JJO C;  3NDD A;  1SNG A;  2WY1 A;  5CDZ A;  1F0C A;  1NQ9 I;  1C5G A;  4AU2 A;  4ZK3 A;  3DLW A;  3NE4 A;  2XN6 A;  1A7C A;  3NDF A;  2OL2 A;  1OO8 A;  2RIV A;  4IC0 A;  2PEE A;  1ANT I;  2CEO A;  2DUT A;  1KCT A;  3F5N A;  4RSQ A;  3R4L A;  1E03 I;  2GD4 C;  3DY0 A;  1OPH A;  1PSI A;  1LJ5 A;  4C41 A;  5CE0 A;  4RO9 A;  4BB2 A;  1T1F A;  2RIW A;  9API A;  4DTE A;  2B4X I;  1MTP A;  2VDY A;  1ATU A;  1OC0 A;  2B4X L;  1AS4 A;  3F1S A; 
#chains in the Genus database with same CATH homology
 3Q03 A;  1C8O A;  3H5C A;  1QLP A;  1E04 I;  1DVM A;  2WXZ A;  3LE2 A;  2H4Q A;  3NDA A;  1DZH I;  1DVN A;  2H4P A;  2H4R A;  4AU3 B;  1WZ9 A;  3DRU A;  2ZV6 A;  1DZH L;  1UHG A;  1IMV A;  2R9Y A;  4KDS A;  1M93 B;  4DY0 A;  3CAA A;  2ZNH A;  2ACH A;  4AFX A;  2HIJ I;  3B9F I;  3PB1 I;  7API A;  3T1P A;  2QUG A;  3F02 A;  1JTI A;  4CAA A;  1AZX I;  1OVA A;  4IF8 A;  1SR5 A;  1JVQ I;  1BR8 I;  3UT3 A;  1DZG I;  1XQJ A;  4AJT A;  4R9I A;  2XN5 A;  1DZG L;  1SEK A;  1OYH I;  2ANT I;  3OZQ A;  1ATH A;  1JMO A;  2BEH I;  1QMB A;  2WY0 C;  4X30 A;  4ROB A;  1ATT A;  3CWL A;  2BEH L;  3Q02 A;  4AQH A;  4G8O A;  4AU4 A;  2ARR A;  2WXZ C;  3EOX A;  4C49 A;  5CDX A;  2B5T I;  1B3K A;  2V95 A;  1E05 I;  4P0F A;  1TB6 I;  9PAI A;  4PYW A;  5BRR I;  2OAY A;  1BY7 A;  2HIJ L;  4DY7 C;  5C98 A;  4P0O A;  5INW A;  1XU8 A;  2WXY C;  2PEF A;  4EB1 I;  5IO1 A;  4ZK0 A;  5EI0 A;  5HGC A;  4GA7 A;  1K9O I;  4AU3 A;  4EB1 L;  4G8R A;  1HLE A;  4Y40 A;  1D5S A;  1IZ2 A;  3CVM A;  3STO A;  1XQG A;  1JMJ A;  1OYH L;  3FGQ A;  3ZHA A;  3DRM A;  1OVA B;  3LW2 A;  4ROA A;  1EZX A;  1OVA C;  2VDX A;  2WXX A;  1QMN A;  2D26 A;  4Y3K A;  2WXW A;  4AJU A;  2XN7 A;  1HP7 A;  1LQ8 A;  8API A;  1YXA A;  1LK6 I;  4YIA A;  3EVJ I;  1DB2 A;  1R1L I;  3KCG I;  2XN3 A;  2HI9 A;  2VH4 A;  3PZF A;  2ARQ A;  1JRR A;  3CWM A;  3VVJ A;  1JJO C;  3NDD A;  1SNG A;  2WY1 A;  5CDZ A;  1F0C A;  1NQ9 I;  1C5G A;  4AU2 A;  4ZK3 A;  3DLW A;  3NE4 A;  2XN6 A;  1A7C A;  3NDF A;  2OL2 A;  1OO8 A;  2RIV A;  4IC0 A;  2PEE A;  1ANT I;  2CEO A;  2DUT A;  1KCT A;  3F5N A;  4RSQ A;  3R4L A;  1E03 I;  2GD4 C;  3DY0 A;  1OPH A;  1PSI A;  1LJ5 A;  4C41 A;  5CE0 A;  4RO9 A;  4BB2 A;  1T1F A;  2RIW A;  9API A;  4DTE A;  2B4X I;  1MTP A;  2VDY A;  1ATU A;  1OC0 A;  2B4X L;  1AS4 A;  3F1S A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...