1OIJ | Genus

Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	77
sequence length	287
structure length	238
Chain Sequence	LELDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQSQEGFAKLLGEPVRANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKLWAVHSNEYETEHPVVRVHPISGERALQLGHFVKRIKGYSLADSQHLFAVLQGHVTRLENTVRWRWEAGDVAIWDNRATQHYAVDDYGTQPRIVRRVTLAGEVPVGVDGYLSRTTR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
publication title	Crystal Structure of the Alkylsulfatase Atsk: Insights Into the Catalytic Mechanism of the Fe(II) Alpha-Ketoglutarate-Dependent Dioxygenase Superfamily pubmed doi rcsb
molecule keywords	PUTATIVE ALKYLSULFATASE ATSK
total genus	77
structure length	238
sequence length	287
ec nomenclature
pdb deposition date	2003-06-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF02668	TauD	Taurine catabolism dioxygenase TauD, TfdA family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	1oijC00

1OIJA 4C8RA 3SWTA 2R6SA 5HSXA 1VZ4A 4CVYA 4OJ8A 1NX8A 3MS5A 2WBPA 1OIHA 4FFAA 3N6WA 4M2GA 1OS7A 2OG7A 1GY9A 2OG5A 1OTJA 4M2FA 5J92A 4BHGA 4BGMA 4CWDA 1OIKA 3PVJA 3R1JA 4M27A 1OIIA 1GVGA 2OG6A 1DRTA 4M23A 4BHFA 4BHIA 2WBQA 3O2GA 4M2CA 2WBOA 3EATX 3V17A 3V15A 1Y0ZA 4BG1A 1JR7A 4Y0EA 2Q4AA 1DS1A 4M26A 4YLMX 4C5WA 1DS0A 4J5IA 4NE0A 1NX4A 4BGKA 4M2EA 4M2IA 4M25A 1DRYA 1VZ5A 1OIJB 1GQWA 1OIJC 5KEUA
chains in the Genus database with same CATH superfamily

1OIJA 4C8RA 3SWTA 2R6SA 5HSXA 1VZ4A 4CVYA 4OJ8A 1NX8A 3MS5A 2WBPA 1OIHA 4FFAA 1YOXA 3N6WA 1PG6A 1OS7A 2OG7A 1GY9A 2OG5A 4M2GA 1OTJA 4M2FA 5J92A 4BHGA 4BGMA 4CWDA 1OIKA 3PVJA 3R1JA 4M27A 1OIIA 1GVGA 2OG6A 1DRTA 4M23A 4BHFA 4BHIA 2WBQA 3O2GA 4M2CA 2WBOA 3EATX 3V17A 3V15A 1Y0ZA 4BG1A 1JR7A 4Y0EA 2Q4AA 1DS1A 4M26A 4YLMX 4C5WA 1DS0A 4J5IA 4NE0A 1NX4A 4BGKA 4M2EA 4M2IA 4M25A 1DRYA 1VZ5A 1OIJB 1GQWA 1OIJC 5KEUA
chains in the Genus database with same CATH topology

1OIJA 4C8RA 5HSXA 4OJ8A 2WBPA 4B7EA 4FFAA 4CWDA 2W0XA 3OD4A 4BIOA 2OG6A 1DRTA 4JAAA 2CGNA 2WBQA 3V17A 4BG1A 1JR7A 2Q4AA 2CGOA 4J5IA 4NR1A 1OIKA 5KEUA 3KCYA 1NX8A 3MS5A 3D8CA 3N6WA 3KCXA 2OG7A 2OG5A 4BHFA 3O2GA 2YDEA 1MZEA 3EATX 1Y0ZA 4YLMX 1H2NA 1IZ3A 2WA3A 4M2IA 1DRYA 1VZ5A 1GQWA 2R6SA 1VZ4A 4Z2WA 1OIHA 1H2LA 2WA4A 4M2GA 1OS7A 4M2FA 4BHGA 5J92A 1YCIA 3R1JA 4BHIA 2WBOA 2XUMA 1DS1A 4M26A 5JWPA 4BGKA 4NE0A 4AI8A 1OIJB 1MZFA 1OIJC 2YC0A 2Y0IA 3SWTA 4B7KA 4CVYA 3P3PA 1GY9A 1OTJA 4BGMA 3PVJA 2ILMA 3P3NA 1OIIA 1GVGA 4M27A 4M23A 4M2CA 3V15A 4Y0EA 4C5WA 4Z1VA 1DS0A 1NX4A 4M2EA 1H2MA 4M25A 1H2KA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1OIJ A;  4C8R A;  3SWT A;  2R6S A;  5HSX A;  1VZ4 A;  4CVY A;  4OJ8 A;  1NX8 A;  3MS5 A;  2WBP A;  1OIH A;  4FFA A;  3N6W A;  4M2G A;  1OS7 A;  2OG7 A;  1GY9 A;  2OG5 A;  1OTJ A;  4M2F A;  5J92 A;  4BHG A;  4BGM A;  4CWD A;  1OIK A;  3PVJ A;  3R1J A;  4M27 A;  1OII A;  1GVG A;  2OG6 A;  1DRT A;  4M23 A;  4BHF A;  4BHI A;  2WBQ A;  3O2G A;  4M2C A;  2WBO A;  3EAT X;  3V17 A;  3V15 A;  1Y0Z A;  4BG1 A;  1JR7 A;  4Y0E A;  2Q4A A;  1DS1 A;  4M26 A;  4YLM X;  4C5W A;  1DS0 A;  4J5I A;  4NE0 A;  1NX4 A;  4BGK A;  4M2E A;  4M2I A;  4M25 A;  1DRY A;  1VZ5 A;  1OIJ B;  1GQW A;  1OIJ C;  5KEU A; 
#chains in the Genus database with same CATH topology
 1OIJ A;  4C8R A;  3SWT A;  2R6S A;  5HSX A;  1VZ4 A;  4CVY A;  4OJ8 A;  1NX8 A;  3MS5 A;  2WBP A;  1OIH A;  4FFA A;  1YOX A;  3N6W A;  1PG6 A;  1OS7 A;  2OG7 A;  1GY9 A;  2OG5 A;  4M2G A;  1OTJ A;  4M2F A;  5J92 A;  4BHG A;  4BGM A;  4CWD A;  1OIK A;  3PVJ A;  3R1J A;  4M27 A;  1OII A;  1GVG A;  2OG6 A;  1DRT A;  4M23 A;  4BHF A;  4BHI A;  2WBQ A;  3O2G A;  4M2C A;  2WBO A;  3EAT X;  3V17 A;  3V15 A;  1Y0Z A;  4BG1 A;  1JR7 A;  4Y0E A;  2Q4A A;  1DS1 A;  4M26 A;  4YLM X;  4C5W A;  1DS0 A;  4J5I A;  4NE0 A;  1NX4 A;  4BGK A;  4M2E A;  4M2I A;  4M25 A;  1DRY A;  1VZ5 A;  1OIJ B;  1GQW A;  1OIJ C;  5KEU A; 
#chains in the Genus database with same CATH homology
 1OIJ A;  4C8R A;  5HSX A;  4OJ8 A;  2WBP A;  4B7E A;  4FFA A;  4CWD A;  2W0X A;  3OD4 A;  4BIO A;  2OG6 A;  1DRT A;  4JAA A;  2CGN A;  2WBQ A;  3V17 A;  4BG1 A;  1JR7 A;  2Q4A A;  2CGO A;  4J5I A;  4NR1 A;  1OIK A;  5KEU A;  3KCY A;  1NX8 A;  3MS5 A;  3D8C A;  3N6W A;  3KCX A;  2OG7 A;  2OG5 A;  4BHF A;  3O2G A;  2YDE A;  1MZE A;  3EAT X;  1Y0Z A;  4YLM X;  1H2N A;  1IZ3 A;  2WA3 A;  4M2I A;  1DRY A;  1VZ5 A;  1GQW A;  2R6S A;  1VZ4 A;  4Z2W A;  1OIH A;  1H2L A;  2WA4 A;  4M2G A;  1OS7 A;  4M2F A;  4BHG A;  5J92 A;  1YCI A;  3R1J A;  4BHI A;  2WBO A;  2XUM A;  1DS1 A;  4M26 A;  5JWP A;  4BGK A;  4NE0 A;  4AI8 A;  1OIJ B;  1MZF A;  1OIJ C;  2YC0 A;  2Y0I A;  3SWT A;  4B7K A;  4CVY A;  3P3P A;  1GY9 A;  1OTJ A;  4BGM A;  3PVJ A;  2ILM A;  3P3N A;  1OII A;  1GVG A;  4M27 A;  4M23 A;  4M2C A;  3V15 A;  4Y0E A;  4C5W A;  4Z1V A;  1DS0 A;  1NX4 A;  4M2E A;  1H2M A;  4M25 A;  1H2K A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1OIJC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations