2KXSA

Zo1 zu5 domain in complex with grinl1a peptide
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
146
structure length
146
Chain Sequence
HSSGLEVLFQGPGSTVVATARGIFNSNGGVLSSIETGVSIIIPQGAIPEGVEQEIYFKVCRDNSILPPLDKEKGETLLSPLVMCGPHGLKFLKPVELRLPHCDPKTWQNKCLPGDPNYLVGANCVSVLIDHFGSGSGVVYGVVRRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Tight junction protein ZO-1, LINKER, peptide of Myocardium-e
publication title Cdc42-dependent formation of the ZO-1/MRCKb complex at the leading edge controls cell migration
pubmed doi rcsb
source organism Homo sapiens, synthetic, homo sapiens
molecule tags Protein binding
total genus 12
structure length 146
sequence length 146
ec nomenclature
pdb deposition date 2010-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 2kxsA00
3F59A 3UD1A 3UD2A 4D8OA 3KBTC 2KXSA 2KXRA 3KBUC
chains in the Genus database with same CATH superfamily
1RW9A 1CB8A 1HN0A 2X03A 1OJNA 1LOHA 1OJMA 2Q1FA 1LXMA 1HM3A 4D6GA 1I8QA 1RWFA 1F1SA 2WCOA 1RWAA 2WMFA 2WMJA 3KBTC 3PQIA 4D6FA 4D1IA 1C82A 3F59A 1RWGA 4D1JA 1RWHA 3QR8A 1X1JA 1OJPA 2WMIB 3UD1A 4D6JA 1RWCA 2WDAA 4DLQA 4D6EA 2E22A 4D71A 2KXRA 4D6CA 1J0NA 1X1IA 1OJOA 2BRVX 2WMIA 1W3YA 3U7VA 4D6DA 4D8OA 1X1HA 1N7RA 1N7QA 2BRWA 4D72A 1HM2A 1HMWA 2KXSA 4D6IA 1N7OA 3KBUC 4D6HA 1EGUA 1F9GA 2WMHA 4DLOA 2WMGA 3UD2A 1N7NA 2E24A 2WMKA 2BRPA 1HMUA 1LXKA 1N7PA 1J0MA
chains in the Genus database with same CATH topology
3F59A 4DLOA 3QR8A 3UD2A 3UD1A 4D8OA 4DLQA 3KBTC 3PQIA 2KXSA 2KXRA 3KBUC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F59 A;  3UD1 A;  3UD2 A;  4D8O A;  3KBT C;  2KXS A;  2KXR A;  3KBU C; 
#chains in the Genus database with same CATH topology
 1RW9 A;  1CB8 A;  1HN0 A;  2X03 A;  1OJN A;  1LOH A;  1OJM A;  2Q1F A;  1LXM A;  1HM3 A;  4D6G A;  1I8Q A;  1RWF A;  1F1S A;  2WCO A;  1RWA A;  2WMF A;  2WMJ A;  3KBT C;  3PQI A;  4D6F A;  4D1I A;  1C82 A;  3F59 A;  1RWG A;  4D1J A;  1RWH A;  3QR8 A;  1X1J A;  1OJP A;  2WMI B;  3UD1 A;  4D6J A;  1RWC A;  2WDA A;  4DLQ A;  4D6E A;  2E22 A;  4D71 A;  2KXR A;  4D6C A;  1J0N A;  1X1I A;  1OJO A;  2BRV X;  2WMI A;  1W3Y A;  3U7V A;  4D6D A;  4D8O A;  1X1H A;  1N7R A;  1N7Q A;  2BRW A;  4D72 A;  1HM2 A;  1HMW A;  2KXS A;  4D6I A;  1N7O A;  3KBU C;  4D6H A;  1EGU A;  1F9G A;  2WMH A;  4DLO A;  2WMG A;  3UD2 A;  1N7N A;  2E24 A;  2WMK A;  2BRP A;  1HMU A;  1LXK A;  1N7P A;  1J0M A; 
#chains in the Genus database with same CATH homology
 3F59 A;  4DLO A;  3QR8 A;  3UD2 A;  3UD1 A;  4D8O A;  4DLQ A;  3KBT C;  3PQI A;  2KXS A;  2KXR A;  3KBU C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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