3KBTC

Crystal structure of the ankyrin binding domain of human erythroid beta spectrin (repeats 13-15) in complex with the spectrin binding domain of human erythroid ankyrin (zu5-ank)
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
159
structure length
157
Chain Sequence
ATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Spectrin beta chain, erythrocyte
publication title Structural basis for spectrin recognition by ankyrin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Structural protein
total genus 30
structure length 157
sequence length 159
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3kbtC00
3UD1A 3F59A 2KXRA 2KXSA 4D8OA 3KBTC 3UD2A 3KBUC
chains in the Genus database with same CATH superfamily
1RWAA 2Q1FA 2WMIB 1N7NA 1RWHA 2KXSA 2WMKA 1N7PA 2BRPA 1OJMA 1LXKA 1OJOA 1OJNA 1HMUA 1HM3A 1I8QA 4D6FA 2WMFA 1N7OA 3PQIA 4D6CA 2WMIA 4D6JA 4D6GA 4D72A 1RWGA 2BRWA 4DLOA 1RWCA 1C82A 4D6EA 1HN0A 1F1SA 1X1IA 3QR8A 1RWFA 3UD2A 1LXMA 1N7QA 4D6DA 1LOHA 2KXRA 2X03A 4D1IA 1F9GA 4D1JA 4DLQA 3KBTC 2WMGA 1HM2A 1RW9A 2WCOA 3U7VA 2E24A 4D6HA 1N7RA 3UD1A 3F59A 1J0NA 2BRVX 3KBUC 1HMWA 2WDAA 1X1HA 1CB8A 2WMJA 4D8OA 4D71A 1OJPA 1X1JA 4D6IA 1EGUA 1J0MA 2WMHA 2E22A 1W3YA
chains in the Genus database with same CATH topology
3UD1A 3F59A 4DLOA 2KXRA 2KXSA 4D8OA 4DLQA 3KBTC 3QR8A 3PQIA 3UD2A 3KBUC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UD1 A;  3F59 A;  2KXR A;  2KXS A;  4D8O A;  3KBT C;  3UD2 A;  3KBU C; 
#chains in the Genus database with same CATH topology
 1RWA A;  2Q1F A;  2WMI B;  1N7N A;  1RWH A;  2KXS A;  2WMK A;  1N7P A;  2BRP A;  1OJM A;  1LXK A;  1OJO A;  1OJN A;  1HMU A;  1HM3 A;  1I8Q A;  4D6F A;  2WMF A;  1N7O A;  3PQI A;  4D6C A;  2WMI A;  4D6J A;  4D6G A;  4D72 A;  1RWG A;  2BRW A;  4DLO A;  1RWC A;  1C82 A;  4D6E A;  1HN0 A;  1F1S A;  1X1I A;  3QR8 A;  1RWF A;  3UD2 A;  1LXM A;  1N7Q A;  4D6D A;  1LOH A;  2KXR A;  2X03 A;  4D1I A;  1F9G A;  4D1J A;  4DLQ A;  3KBT C;  2WMG A;  1HM2 A;  1RW9 A;  2WCO A;  3U7V A;  2E24 A;  4D6H A;  1N7R A;  3UD1 A;  3F59 A;  1J0N A;  2BRV X;  3KBU C;  1HMW A;  2WDA A;  1X1H A;  1CB8 A;  2WMJ A;  4D8O A;  4D71 A;  1OJP A;  1X1J A;  4D6I A;  1EGU A;  1J0M A;  2WMH A;  2E22 A;  1W3Y A; 
#chains in the Genus database with same CATH homology
 3UD1 A;  3F59 A;  4DLO A;  2KXR A;  2KXS A;  4D8O A;  4DLQ A;  3KBT C;  3QR8 A;  3PQI A;  3UD2 A;  3KBU C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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