3UD1A

Crystal structure of zu5a-zu5b domains of human erythrocyte ankyrin
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
322
structure length
320
Chain Sequence
GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKRVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Ankyrin-1
publication title Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Protein binding
total genus 76
structure length 320
sequence length 322
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3ud1A01
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3ud1A02
2KXRA 3UD2A 3KBTC 2KXSA 3F59A 4D8OA 3UD1A 3KBUC
chains in the Genus database with same CATH superfamily
1J0NA 1I8QA 2BRWA 1RWCA 4D6CA 1LXMA 1F1SA 3KBTC 1HMWA 2BRVX 1HMUA 4D6HA 1HM3A 1X1HA 4DLQA 1OJOA 4D6JA 1OJNA 1N7PA 2WMFA 1RW9A 1HM2A 4D6IA 4D6DA 2WMJA 4D6GA 1W3YA 4D6EA 3F59A 2WMIB 4D72A 1X1JA 1CB8A 3UD1A 1F9GA 1J0MA 2E24A 2X03A 3U7VA 4D1JA 1HN0A 1X1IA 2WMIA 1RWHA 1N7RA 2WDAA 1N7QA 1OJMA 1RWAA 1RWFA 2WMHA 3PQIA 1N7OA 1RWGA 2KXSA 4DLOA 4D8OA 2E22A 2Q1FA 3QR8A 1EGUA 1OJPA 2WCOA 4D6FA 4D71A 2KXRA 2BRPA 3UD2A 1C82A 1LXKA 1N7NA 4D1IA 2WMGA 1LOHA 3KBUC 2WMKA
chains in the Genus database with same CATH topology
2KXRA 3UD2A 3KBTC 3PQIA 4DLQA 4DLOA 2KXSA 3F59A 4D8OA 3UD1A 3KBUC 3QR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXR A;  3UD2 A;  3KBT C;  2KXS A;  3F59 A;  4D8O A;  3UD1 A;  3KBU C; 
#chains in the Genus database with same CATH topology
 1J0N A;  1I8Q A;  2BRW A;  1RWC A;  4D6C A;  1LXM A;  1F1S A;  3KBT C;  1HMW A;  2BRV X;  1HMU A;  4D6H A;  1HM3 A;  1X1H A;  4DLQ A;  1OJO A;  4D6J A;  1OJN A;  1N7P A;  2WMF A;  1RW9 A;  1HM2 A;  4D6I A;  4D6D A;  2WMJ A;  4D6G A;  1W3Y A;  4D6E A;  3F59 A;  2WMI B;  4D72 A;  1X1J A;  1CB8 A;  3UD1 A;  1F9G A;  1J0M A;  2E24 A;  2X03 A;  3U7V A;  4D1J A;  1HN0 A;  1X1I A;  2WMI A;  1RWH A;  1N7R A;  2WDA A;  1N7Q A;  1OJM A;  1RWA A;  1RWF A;  2WMH A;  3PQI A;  1N7O A;  1RWG A;  2KXS A;  4DLO A;  4D8O A;  2E22 A;  2Q1F A;  3QR8 A;  1EGU A;  1OJP A;  2WCO A;  4D6F A;  4D71 A;  2KXR A;  2BRP A;  3UD2 A;  1C82 A;  1LXK A;  1N7N A;  4D1I A;  2WMG A;  1LOH A;  3KBU C;  2WMK A; 
#chains in the Genus database with same CATH homology
 2KXR A;  3UD2 A;  3KBT C;  3PQI A;  4DLQ A;  4DLO A;  2KXS A;  3F59 A;  4D8O A;  3UD1 A;  3KBU C;  3QR8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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