3KBUC

Crystal structure of the ankyrin binding domain of human erythroid beta spectrin (repeats 13-15) in complex with the spectrin binding domain of human erythroid ankyrin (zu5-ank), emts derivative
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
158
structure length
153
Chain Sequence
TGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRELVVLRSENGSVWKEHRSGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Spectrin beta chain, erythrocyte
publication title Structural basis for spectrin recognition by ankyrin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Structural protein
total genus 32
structure length 153
sequence length 158
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3kbuC00
2KXSA 2KXRA 3F59A 3UD1A 3KBTC 3KBUC 4D8OA 3UD2A
chains in the Genus database with same CATH superfamily
1HM2A 1J0NA 1LOHA 2WDAA 3F59A 2WMJA 4D6FA 1RWFA 4D1IA 1F1SA 1N7PA 1LXMA 4DLOA 1OJMA 1LXKA 4D6CA 4D6JA 4D6DA 4D6IA 4DLQA 2WCOA 2KXSA 2WMKA 2WMHA 1HM3A 3QR8A 2WMGA 1HMWA 1OJNA 1EGUA 2E24A 2X03A 4D71A 1F9GA 1I8QA 3KBUC 1X1HA 4D72A 2BRVX 1N7RA 1N7NA 2BRWA 2Q1FA 2KXRA 4D1JA 3UD1A 4D6GA 1W3YA 1C82A 1RWGA 3U7VA 1OJPA 1N7OA 2E22A 1OJOA 1N7QA 2WMFA 4D6HA 3PQIA 1HN0A 1HMUA 1RWAA 1RWCA 1CB8A 1X1IA 1X1JA 3KBTC 2WMIA 2BRPA 1RWHA 4D6EA 1RW9A 4D8OA 1J0MA 3UD2A 2WMIB
chains in the Genus database with same CATH topology
3PQIA 4DLQA 2KXSA 2KXRA 3F59A 3UD1A 3QR8A 3KBTC 4DLOA 3KBUC 4D8OA 3UD2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXS A;  2KXR A;  3F59 A;  3UD1 A;  3KBT C;  3KBU C;  4D8O A;  3UD2 A; 
#chains in the Genus database with same CATH topology
 1HM2 A;  1J0N A;  1LOH A;  2WDA A;  3F59 A;  2WMJ A;  4D6F A;  1RWF A;  4D1I A;  1F1S A;  1N7P A;  1LXM A;  4DLO A;  1OJM A;  1LXK A;  4D6C A;  4D6J A;  4D6D A;  4D6I A;  4DLQ A;  2WCO A;  2KXS A;  2WMK A;  2WMH A;  1HM3 A;  3QR8 A;  2WMG A;  1HMW A;  1OJN A;  1EGU A;  2E24 A;  2X03 A;  4D71 A;  1F9G A;  1I8Q A;  3KBU C;  1X1H A;  4D72 A;  2BRV X;  1N7R A;  1N7N A;  2BRW A;  2Q1F A;  2KXR A;  4D1J A;  3UD1 A;  4D6G A;  1W3Y A;  1C82 A;  1RWG A;  3U7V A;  1OJP A;  1N7O A;  2E22 A;  1OJO A;  1N7Q A;  2WMF A;  4D6H A;  3PQI A;  1HN0 A;  1HMU A;  1RWA A;  1RWC A;  1CB8 A;  1X1I A;  1X1J A;  3KBT C;  2WMI A;  2BRP A;  1RWH A;  4D6E A;  1RW9 A;  4D8O A;  1J0M A;  3UD2 A;  2WMI B; 
#chains in the Genus database with same CATH homology
 3PQI A;  4DLQ A;  2KXS A;  2KXR A;  3F59 A;  3UD1 A;  3QR8 A;  3KBT C;  4DLO A;  3KBU C;  4D8O A;  3UD2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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