3UD2A

Crystal structure of selenomethionine zu5a-zu5b protein domains of human erythrocyte ankyrin
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
321
structure length
320
Chain Sequence
FLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Ankyrin-1
publication title Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Protein binding
total genus 69
structure length 320
sequence length 321
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3ud2A01
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3ud2A02
2KXSA 3KBTC 4D8OA 3KBUC 3F59A 3UD1A 3UD2A 2KXRA
chains in the Genus database with same CATH superfamily
3QR8A 4DLOA 2WMKA 4D6DA 4D8OA 1HMUA 1OJPA 1F1SA 3UD2A 1EGUA 1N7PA 1RWAA 1LXKA 1F9GA 1N7OA 1RWCA 2WCOA 1RWHA 2WMJA 4D6JA 1N7RA 1N7NA 2E22A 4D6CA 1J0MA 1OJMA 1RW9A 1HM2A 4D6EA 1N7QA 2X03A 2WMIA 4D6GA 1RWGA 1I8QA 2BRPA 3U7VA 2Q1FA 4D71A 1X1HA 2WMHA 1OJNA 1J0NA 3KBTC 4D6HA 1OJOA 1HM3A 1X1IA 4D6FA 4D1IA 1HN0A 2WMIB 1CB8A 1LOHA 1HMWA 1C82A 2KXRA 1X1JA 1LXMA 2WMGA 2WMFA 2WDAA 2KXSA 2BRVX 2E24A 3UD1A 4DLQA 4D6IA 3KBUC 4D1JA 3F59A 1W3YA 3PQIA 1RWFA 4D72A 2BRWA
chains in the Genus database with same CATH topology
3QR8A 2KXSA 4DLOA 3KBTC 4D8OA 3KBUC 4DLQA 3F59A 3PQIA 3UD1A 3UD2A 2KXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXS A;  3KBT C;  4D8O A;  3KBU C;  3F59 A;  3UD1 A;  3UD2 A;  2KXR A; 
#chains in the Genus database with same CATH topology
 3QR8 A;  4DLO A;  2WMK A;  4D6D A;  4D8O A;  1HMU A;  1OJP A;  1F1S A;  3UD2 A;  1EGU A;  1N7P A;  1RWA A;  1LXK A;  1F9G A;  1N7O A;  1RWC A;  2WCO A;  1RWH A;  2WMJ A;  4D6J A;  1N7R A;  1N7N A;  2E22 A;  4D6C A;  1J0M A;  1OJM A;  1RW9 A;  1HM2 A;  4D6E A;  1N7Q A;  2X03 A;  2WMI A;  4D6G A;  1RWG A;  1I8Q A;  2BRP A;  3U7V A;  2Q1F A;  4D71 A;  1X1H A;  2WMH A;  1OJN A;  1J0N A;  3KBT C;  4D6H A;  1OJO A;  1HM3 A;  1X1I A;  4D6F A;  4D1I A;  1HN0 A;  2WMI B;  1CB8 A;  1LOH A;  1HMW A;  1C82 A;  2KXR A;  1X1J A;  1LXM A;  2WMG A;  2WMF A;  2WDA A;  2KXS A;  2BRV X;  2E24 A;  3UD1 A;  4DLQ A;  4D6I A;  3KBU C;  4D1J A;  3F59 A;  1W3Y A;  3PQI A;  1RWF A;  4D72 A;  2BRW A; 
#chains in the Genus database with same CATH homology
 3QR8 A;  2KXS A;  4DLO A;  3KBT C;  4D8O A;  3KBU C;  4DLQ A;  3F59 A;  3PQI A;  3UD1 A;  3UD2 A;  2KXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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