3F59A

Crystal structure of zu5-ank, the spectrin binding region of human erythroid ankyrin
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
157
structure length
149
Chain Sequence
b'GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Ankyrin-1
publication title Structures of the spectrin-ankyrin interaction binding domains.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Structural protein
total genus 33
structure length 149
sequence length 157
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3f59A00
2KXSA 3UD1A 3F59A 3KBTC 3UD2A 4D8OA 2KXRA 3KBUC
chains in the Genus database with same CATH superfamily
2KXSA 3F59A 3PQIA 1OJOA 1F9GA 4D71A 2WCOA 3U7VA 4D6CA 4D72A 4DLOA 1HM3A 2WMFA 1X1HA 2WDAA 2E24A 1HN0A 3KBTC 4DLQA 1X1IA 1EGUA 1N7QA 1N7NA 1OJNA 1F1SA 1RW9A 2WMIA 3UD2A 4D6DA 1LXMA 1N7PA 2X03A 2WMKA 1C82A 1OJPA 1HMWA 1OJMA 1W3YA 2WMGA 3QR8A 2Q1FA 1N7RA 4D1JA 1N7OA 4D6IA 1I8QA 2WMIB 1RWGA 2BRWA 1HMUA 1RWAA 1J0NA 2BRPA 1RWHA 2KXRA 1RWFA 2WMJA 1HM2A 3KBUC 4D6HA 1CB8A 3UD1A 4D6EA 4D6GA 2WMHA 2BRVX 4D6FA 1LOHA 1LXKA 4D8OA 4D6JA 4D1IA 2E22A 1J0MA 1X1JA 1RWCA
chains in the Genus database with same CATH topology
2KXSA 3QR8A 3F59A 3KBTC 3PQIA 3UD1A 4DLQA 3UD2A 4DLOA 4D8OA 2KXRA 3KBUC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXS A;  3UD1 A;  3F59 A;  3KBT C;  3UD2 A;  4D8O A;  2KXR A;  3KBU C; 
#chains in the Genus database with same CATH topology
 2KXS A;  3F59 A;  3PQI A;  1OJO A;  1F9G A;  4D71 A;  2WCO A;  3U7V A;  4D6C A;  4D72 A;  4DLO A;  1HM3 A;  2WMF A;  1X1H A;  2WDA A;  2E24 A;  1HN0 A;  3KBT C;  4DLQ A;  1X1I A;  1EGU A;  1N7Q A;  1N7N A;  1OJN A;  1F1S A;  1RW9 A;  2WMI A;  3UD2 A;  4D6D A;  1LXM A;  1N7P A;  2X03 A;  2WMK A;  1C82 A;  1OJP A;  1HMW A;  1OJM A;  1W3Y A;  2WMG A;  3QR8 A;  2Q1F A;  1N7R A;  4D1J A;  1N7O A;  4D6I A;  1I8Q A;  2WMI B;  1RWG A;  2BRW A;  1HMU A;  1RWA A;  1J0N A;  2BRP A;  1RWH A;  2KXR A;  1RWF A;  2WMJ A;  1HM2 A;  3KBU C;  4D6H A;  1CB8 A;  3UD1 A;  4D6E A;  4D6G A;  2WMH A;  2BRV X;  4D6F A;  1LOH A;  1LXK A;  4D8O A;  4D6J A;  4D1I A;  2E22 A;  1J0M A;  1X1J A;  1RWC A; 
#chains in the Genus database with same CATH homology
 2KXS A;  3QR8 A;  3F59 A;  3KBT C;  3PQI A;  3UD1 A;  4DLQ A;  3UD2 A;  4DLO A;  4D8O A;  2KXR A;  3KBU C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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