3F59A

Crystal structure of zu5-ank, the spectrin binding region of human erythroid ankyrin
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
157
structure length
149
Chain Sequence
GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Ankyrin-1
publication title Structures of the spectrin-ankyrin interaction binding domains.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Structural protein
total genus 33
structure length 149
sequence length 157
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3f59A00
3UD1A 3UD2A 2KXSA 4D8OA 2KXRA 3KBUC 3F59A 3KBTC
chains in the Genus database with same CATH superfamily
2WMIB 1HMUA 1HN0A 1LXMA 1HM3A 1OJPA 1N7RA 1N7PA 1J0MA 1OJMA 4D8OA 2BRWA 2KXRA 1X1IA 2E22A 2X03A 1OJNA 1F9GA 1X1HA 2KXSA 3U7VA 4DLOA 1X1JA 2WMGA 1RWAA 3PQIA 4D72A 1HM2A 1RWGA 1N7NA 1EGUA 1LXKA 1N7QA 2WCOA 2WMHA 1RWFA 2WDAA 3F59A 1N7OA 1J0NA 3KBUC 3KBTC 1HMWA 3UD2A 3UD1A 4D71A 4D6GA 4D1IA 2WMJA 4D6JA 1RWCA 4D6HA 2WMFA 2BRVX 4D6DA 2BRPA 4D6CA 4D6IA 4DLQA 1F1SA 1RWHA 1W3YA 1OJOA 1RW9A 1I8QA 4D1JA 2E24A 4D6EA 4D6FA 1LOHA 1C82A 1CB8A 2WMIA 2Q1FA 2WMKA 3QR8A
chains in the Genus database with same CATH topology
3UD1A 3UD2A 2KXSA 4DLOA 3PQIA 4D8OA 2KXRA 4DLQA 3KBUC 3QR8A 3F59A 3KBTC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UD1 A;  3UD2 A;  2KXS A;  4D8O A;  2KXR A;  3KBU C;  3F59 A;  3KBT C; 
#chains in the Genus database with same CATH topology
 2WMI B;  1HMU A;  1HN0 A;  1LXM A;  1HM3 A;  1OJP A;  1N7R A;  1N7P A;  1J0M A;  1OJM A;  4D8O A;  2BRW A;  2KXR A;  1X1I A;  2E22 A;  2X03 A;  1OJN A;  1F9G A;  1X1H A;  2KXS A;  3U7V A;  4DLO A;  1X1J A;  2WMG A;  1RWA A;  3PQI A;  4D72 A;  1HM2 A;  1RWG A;  1N7N A;  1EGU A;  1LXK A;  1N7Q A;  2WCO A;  2WMH A;  1RWF A;  2WDA A;  3F59 A;  1N7O A;  1J0N A;  3KBU C;  3KBT C;  1HMW A;  3UD2 A;  3UD1 A;  4D71 A;  4D6G A;  4D1I A;  2WMJ A;  4D6J A;  1RWC A;  4D6H A;  2WMF A;  2BRV X;  4D6D A;  2BRP A;  4D6C A;  4D6I A;  4DLQ A;  1F1S A;  1RWH A;  1W3Y A;  1OJO A;  1RW9 A;  1I8Q A;  4D1J A;  2E24 A;  4D6E A;  4D6F A;  1LOH A;  1C82 A;  1CB8 A;  2WMI A;  2Q1F A;  2WMK A;  3QR8 A; 
#chains in the Genus database with same CATH homology
 3UD1 A;  3UD2 A;  2KXS A;  4DLO A;  3PQI A;  4D8O A;  2KXR A;  4DLQ A;  3KBU C;  3QR8 A;  3F59 A;  3KBT C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...