The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
103
|
sequence length |
319
|
structure length |
319
|
Chain Sequence |
RYDVTLDQSDAELVEEIAWKLATQATGRPDDAEWVEAARNAWHAWPATLRRDLAGFRRDSGPDGAIVLRGLPVDSMGLPPTPRVNGSVQREASLGAAVLLMTACGLGDPGAFLPEKNGALVQDVVPVPGMEEFQGNAGSTLLTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTACVRRVLPLLSDSTVDALWAPEFRTAPPPSFQLSGPEEAPAPVLLGDRSDPDLRVDLAATEPVTERAAEALRELQAHFDATAVTHRLLPGELAIVDNRVTVHGRTEFTPRYDGTDRWLQRTFVLTDLRRSRAMRPADGYVLGAA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Mechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide
pubmed doi rcsb |
| molecule tags |
Oxidoreductase, electron transport
|
| source organism |
Streptomyces coelicolor a3(2)
|
| molecule keywords |
asparagine oxygenase
|
| total genus |
103
|
| structure length |
319
|
| sequence length |
319
|
| ec nomenclature |
ec
1.14.11.39: L-asparagine oxygenase. |
| pdb deposition date | 2007-01-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02668 | TauD | Taurine catabolism dioxygenase TauD, TfdA family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 4-Layer Sandwich | Double-stranded beta-helix | Clavaminate synthase-like |
#chains in the Genus database with same CATH superfamily 1GVG A; 4M26 A; 4Y0E A; 2R6S A; 5J92 A; 3N6W A; 4CVY A; 4BHI A; 1OS7 A; 2WBQ A; 4C8R A; 3SWT A; 4BHF A; 2WBO A; 1Y0Z A; 2Q4A A; 5HSX A; 3O2G A; 3R1J A; 4BHG A; 4M25 A; 1DS0 A; 4M2C A; 3V17 A; 4BGM A; 1OIJ A; 1GY9 A; 4NE0 A; 1VZ5 A; 3EAT X; 1OIJ B; 4BG1 A; 4M2E A; 4BGK A; 4M27 A; 1DS1 A; 1OIK A; 1OIJ C; 2OG6 A; 4FFA A; 4J5I A; 4M2G A; 3V15 A; 4M2F A; 1GQW A; 1DRY A; 1OTJ A; 4YLM X; 2OG7 A; 2WBP A; 1JR7 A; 1OIH A; 3PVJ A; 4C5W A; 1DRT A; 4OJ8 A; 1OII A; 5KEU A; 2OG5 A; 4M23 A; 1VZ4 A; 1NX4 A; 3MS5 A; 1NX8 A; 4M2I A; 4CWD A; #chains in the Genus database with same CATH topology 1GVG A; 4M26 A; 4Y0E A; 2R6S A; 5J92 A; 1PG6 A; 3N6W A; 4CVY A; 4BHI A; 1OS7 A; 2WBQ A; 4C8R A; 3SWT A; 4BHF A; 2WBO A; 1Y0Z A; 2Q4A A; 5HSX A; 3O2G A; 3R1J A; 4BHG A; 4M25 A; 1DS0 A; 4M2C A; 3V17 A; 4BGM A; 1OIJ A; 1GY9 A; 4NE0 A; 1YOX A; 1VZ5 A; 3EAT X; 1OIJ B; 4BG1 A; 4M2E A; 4BGK A; 4M27 A; 1DS1 A; 1OIK A; 1OIJ C; 2OG6 A; 4FFA A; 4J5I A; 4M2G A; 3V15 A; 4M2F A; 1GQW A; 1DRY A; 1OTJ A; 4YLM X; 2OG7 A; 2WBP A; 1JR7 A; 1OIH A; 3PVJ A; 4C5W A; 1DRT A; 4OJ8 A; 1OII A; 5KEU A; 2OG5 A; 4M23 A; 1VZ4 A; 1NX4 A; 3MS5 A; 1NX8 A; 4M2I A; 4CWD A; #chains in the Genus database with same CATH homology 4M26 A; 2WA4 A; 4CVY A; 1OS7 A; 1YCI A; 2WBQ A; 3SWT A; 4BHF A; 4AI8 A; 4JAA A; 1DS0 A; 4M2C A; 4Z1V A; 1H2K A; 2Y0I A; 1H2N A; 2OG5 A; 4M23 A; 1VZ4 A; 3MS5 A; 4CWD A; 2ILM A; 5J92 A; 1MZE A; 1H2M A; 4B7K A; 3O2G A; 1IZ3 A; 1OIJ A; 1VZ5 A; 4M2E A; 4M27 A; 2OG6 A; 2CGN A; 3KCX A; 1GQW A; 4YLM X; 5JWP A; 3P3P A; 4C5W A; 1OII A; 4M25 A; 4M2F A; 5KEU A; 1GVG A; 3N6W A; 4BHI A; 3OD4 A; 4C8R A; 2W0X A; 2YDE A; 5HSX A; 3R1J A; 4Z2W A; 4BGM A; 3KCY A; 3EAT X; 1OIJ B; 4BG1 A; 4BGK A; 4BIO A; 1OIJ C; 1OIK A; 4FFA A; 2YC0 A; 1DRY A; 2OG7 A; 2XUM A; 1OIH A; 3D8C A; 1H2L A; 1GY9 A; 4M2I A; 4Y0E A; 2R6S A; 4NR1 A; 2CGO A; 2WBO A; 1Y0Z A; 2Q4A A; 2WA3 A; 3P3N A; 4BHG A; 3V17 A; 4NE0 A; 1DS1 A; 4M2G A; 3V15 A; 4J5I A; 1OTJ A; 1MZF A; 2WBP A; 1JR7 A; 3PVJ A; 1DRT A; 4OJ8 A; 4B7E A; 1NX4 A; 1NX8 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
