3F59 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	157
structure length	149
Chain Sequence	GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 149 atoms

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149 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Structural protein
source organism	Homo sapiens
publication title	Structures of the spectrin-ankyrin interaction binding domains. pubmed doi rcsb
molecule keywords	Ankyrin-1
total genus	33
structure length	149
sequence length	157
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2008-11-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00791	ZU5	ZU5 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.220.30	Mainly Beta	Sandwich	Chondroitinase Ac; Chain A, domain 3	Chondroitinase Ac; Chain A, domain 3	3f59A00

3F59A 2KXRA 3UD1A 3UD2A 3KBTC 3KBUC 2KXSA 4D8OA
chains in the Genus database with same CATH superfamily

2BRWA 1N7QA 1OJOA 1LXMA 1OJPA 4D1JA 1HM3A 2Q1FA 2BRVX 4D6GA 1J0MA 1LOHA 1F1SA 2WMFA 3KBTC 1RWGA 3U7VA 1N7RA 1F9GA 1LXKA 4D72A 1X1IA 1HMWA 1RWFA 1X1JA 1N7OA 4DLOA 3F59A 2X03A 1CB8A 2KXRA 2E22A 2BRPA 2WCOA 3UD2A 1HMUA 4D1IA 2WDAA 2WMIB 4DLQA 1W3YA 4D6IA 1RWHA 4D8OA 4D6DA 1N7PA 1RWCA 2WMKA 4D6CA 1HN0A 3UD1A 2WMIA 1EGUA 1RW9A 4D6HA 3KBUC 3PQIA 1RWAA 4D6EA 2KXSA 1HM2A 2WMGA 4D6JA 1X1HA 1J0NA 4D71A 3QR8A 1I8QA 1N7NA 1OJNA 2WMHA 1OJMA 2WMJA 4D6FA 1C82A 2E24A
chains in the Genus database with same CATH topology

4DLOA 3QR8A 3F59A 2KXRA 3UD1A 3UD2A 4DLQA 3KBTC 3KBUC 3PQIA 2KXSA 4D8OA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3F59 A;  2KXR A;  3UD1 A;  3UD2 A;  3KBT C;  3KBU C;  2KXS A;  4D8O A; 
#chains in the Genus database with same CATH topology
 2BRW A;  1N7Q A;  1OJO A;  1LXM A;  1OJP A;  4D1J A;  1HM3 A;  2Q1F A;  2BRV X;  4D6G A;  1J0M A;  1LOH A;  1F1S A;  2WMF A;  3KBT C;  1RWG A;  3U7V A;  1N7R A;  1F9G A;  1LXK A;  4D72 A;  1X1I A;  1HMW A;  1RWF A;  1X1J A;  1N7O A;  4DLO A;  3F59 A;  2X03 A;  1CB8 A;  2KXR A;  2E22 A;  2BRP A;  2WCO A;  3UD2 A;  1HMU A;  4D1I A;  2WDA A;  2WMI B;  4DLQ A;  1W3Y A;  4D6I A;  1RWH A;  4D8O A;  4D6D A;  1N7P A;  1RWC A;  2WMK A;  4D6C A;  1HN0 A;  3UD1 A;  2WMI A;  1EGU A;  1RW9 A;  4D6H A;  3KBU C;  3PQI A;  1RWA A;  4D6E A;  2KXS A;  1HM2 A;  2WMG A;  4D6J A;  1X1H A;  1J0N A;  4D71 A;  3QR8 A;  1I8Q A;  1N7N A;  1OJN A;  2WMH A;  1OJM A;  2WMJ A;  4D6F A;  1C82 A;  2E24 A; 
#chains in the Genus database with same CATH homology
 4DLO A;  3QR8 A;  3F59 A;  2KXR A;  3UD1 A;  3UD2 A;  4DLQ A;  3KBT C;  3KBU C;  3PQI A;  2KXS A;  4D8O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3F59A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations