3KBU | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	158
structure length	153
Chain Sequence	TGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRELVVLRSENGSVWKEHRSGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 153 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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153 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Structural protein
source organism	Homo sapiens
publication title	Structural basis for spectrin recognition by ankyrin. pubmed doi rcsb
molecule keywords	Spectrin beta chain, erythrocyte
total genus	32
structure length	153
sequence length	158
chains with identical sequence	D
ec nomenclature
pdb deposition date	2009-10-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00791	ZU5	ZU5 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.220.30	Mainly Beta	Sandwich	Chondroitinase Ac; Chain A, domain 3	Chondroitinase Ac; Chain A, domain 3	3kbuC00

3KBTC 3F59A 2KXSA 3KBUC 4D8OA 3UD1A 3UD2A 2KXRA
chains in the Genus database with same CATH superfamily

4D71A 2BRVX 2E22A 1LXKA 2BRPA 1CB8A 2BRWA 2E24A 1F1SA 4D1IA 2WMIA 4D6JA 4DLQA 1HMUA 4D8OA 3UD2A 4D6IA 3KBTC 1F9GA 1HMWA 1HM3A 1LOHA 1EGUA 2WMKA 1RWHA 2WMHA 1OJOA 2WDAA 1X1HA 1OJPA 3U7VA 4D6FA 4D6HA 1RWGA 1N7OA 1J0MA 2KXRA 4D6GA 1RWAA 1RWFA 1RW9A 2KXSA 1HN0A 1LXMA 2WMGA 1HM2A 1I8QA 2Q1FA 2WCOA 1N7NA 3PQIA 4D6DA 1W3YA 1N7RA 1X1IA 1C82A 1N7QA 3F59A 1RWCA 3KBUC 3QR8A 4DLOA 2WMIB 1N7PA 2X03A 2WMJA 2WMFA 4D1JA 4D6EA 4D72A 4D6CA 1X1JA 1J0NA 3UD1A 1OJNA 1OJMA
chains in the Genus database with same CATH topology

3KBTC 3F59A 2KXSA 3KBUC 3QR8A 4DLOA 3PQIA 4DLQA 4D8OA 3UD1A 3UD2A 2KXRA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3KBT C;  3F59 A;  2KXS A;  3KBU C;  4D8O A;  3UD1 A;  3UD2 A;  2KXR A; 
#chains in the Genus database with same CATH topology
 4D71 A;  2BRV X;  2E22 A;  1LXK A;  2BRP A;  1CB8 A;  2BRW A;  2E24 A;  1F1S A;  4D1I A;  2WMI A;  4D6J A;  4DLQ A;  1HMU A;  4D8O A;  3UD2 A;  4D6I A;  3KBT C;  1F9G A;  1HMW A;  1HM3 A;  1LOH A;  1EGU A;  2WMK A;  1RWH A;  2WMH A;  1OJO A;  2WDA A;  1X1H A;  1OJP A;  3U7V A;  4D6F A;  4D6H A;  1RWG A;  1N7O A;  1J0M A;  2KXR A;  4D6G A;  1RWA A;  1RWF A;  1RW9 A;  2KXS A;  1HN0 A;  1LXM A;  2WMG A;  1HM2 A;  1I8Q A;  2Q1F A;  2WCO A;  1N7N A;  3PQI A;  4D6D A;  1W3Y A;  1N7R A;  1X1I A;  1C82 A;  1N7Q A;  3F59 A;  1RWC A;  3KBU C;  3QR8 A;  4DLO A;  2WMI B;  1N7P A;  2X03 A;  2WMJ A;  2WMF A;  4D1J A;  4D6E A;  4D72 A;  4D6C A;  1X1J A;  1J0N A;  3UD1 A;  1OJN A;  1OJM A; 
#chains in the Genus database with same CATH homology
 3KBT C;  3F59 A;  2KXS A;  3KBU C;  3QR8 A;  4DLO A;  3PQI A;  4DLQ A;  4D8O A;  3UD1 A;  3UD2 A;  2KXR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3KBUC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations