3R1J | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	292
structure length	246
Chain Sequence	ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIGATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNRPDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPLEVLA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Mycobacterium avium
publication title	Increasing the structural coverage of tuberculosis drug targets. pubmed doi rcsb
molecule keywords	Alpha-ketoglutarate-dependent taurine dioxygenase
total genus	79
structure length	246
sequence length	292
chains with identical sequence	B
ec nomenclature	ec 1.14.11.17: Taurine dioxygenase.
pdb deposition date	2011-03-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02668	TauD	Taurine catabolism dioxygenase TauD, TfdA family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	3r1jA00

1OIJA 2R6SA 4BHGA 4M23A 4BG1A 4CWDA 1GY9A 3EATX 1NX4A 3R1JA 1DS0A 5HSXA 3V15A 1OIIA 4FFAA 1GQWA 1JR7A 2WBQA 4BGMA 2WBOA 4CVYA 1OIHA 4NE0A 4BHIA 2OG7A 2WBPA 1VZ4A 3N6WA 1Y0ZA 4OJ8A 4C5WA 4J5IA 3SWTA 2Q4AA 5KEUA 3PVJA 4M25A 5J92A 4M2CA 4M2GA 2OG5A 4YLMX 1DRYA 1OTJA 1GVGA 4M2FA 4C8RA 1DS1A 4M2EA 4BGKA 1OIJB 1OS7A 3MS5A 4M2IA 4BHFA 1VZ5A 3O2GA 4M26A 4Y0EA 4M27A 1DRTA 1OIKA 2OG6A 1NX8A 3V17A 1OIJC
chains in the Genus database with same CATH superfamily

1OIJA 2R6SA 4BHGA 4M23A 4BG1A 4CWDA 1GY9A 3EATX 1NX4A 3R1JA 1DS0A 5HSXA 3V15A 1OIIA 4FFAA 1GQWA 1JR7A 2WBQA 4BGMA 1PG6A 2WBOA 4CVYA 1OIHA 4NE0A 4BHIA 2OG7A 2WBPA 1VZ4A 3N6WA 1Y0ZA 4OJ8A 4C5WA 4J5IA 3SWTA 2Q4AA 5KEUA 3PVJA 1YOXA 4M25A 5J92A 4M2CA 4M2GA 2OG5A 4YLMX 1DRYA 1OTJA 1GVGA 4M2FA 4C8RA 1DS1A 4M2EA 4BGKA 1OIJB 1OS7A 3MS5A 4M2IA 4BHFA 1VZ5A 3O2GA 4M26A 4Y0EA 4M27A 1DRTA 1OIKA 2OG6A 1NX8A 3V17A 1OIJC
chains in the Genus database with same CATH topology

1H2MA 2R6SA 2Y0IA 4BHGA 4M23A 4CWDA 1NX4A 4B7KA 4BGMA 4B7EA 4OJ8A 4J5IA 1MZEA 4JAAA 4M2GA 2CGOA 3OD4A 1DS1A 4M2EA 1VZ5A 4Y0EA 4M27A 1NX8A 4BG1A 3EATX 3R1JA 1OIIA 4FFAA 1GQWA 1JR7A 4AI8A 2WA4A 3N6WA 2W0XA 2Q4AA 5KEUA 5J92A 2OG5A 3D8CA 1OTJA 4M2FA 3P3NA 4Z2WA 1OIJB 4BHFA 3MS5A 1YCIA 2OG6A 3V17A 2XUMA 1OIJA 4NR1A 5HSXA 3V15A 2WBOA 4Z1VA 4NE0A 1Y0ZA 5JWPA 1H2KA 3KCXA 4YLMX 1H2LA 2WA3A 1OS7A 3O2GA 2YC0A 1DRTA 1H2NA 4M2CA 1OIJC 1GY9A 1DS0A 1IZ3A 3P3PA 2CGNA 2WBQA 1MZFA 4CVYA 1OIHA 4BHIA 2OG7A 2WBPA 1VZ4A 4C5WA 3SWTA 3PVJA 4M25A 2ILMA 1DRYA 1GVGA 3KCYA 4BIOA 4C8RA 4BGKA 2YDEA 4M2IA 4M26A 1OIKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1OIJ A;  2R6S A;  4BHG A;  4M23 A;  4BG1 A;  4CWD A;  1GY9 A;  3EAT X;  1NX4 A;  3R1J A;  1DS0 A;  5HSX A;  3V15 A;  1OII A;  4FFA A;  1GQW A;  1JR7 A;  2WBQ A;  4BGM A;  2WBO A;  4CVY A;  1OIH A;  4NE0 A;  4BHI A;  2OG7 A;  2WBP A;  1VZ4 A;  3N6W A;  1Y0Z A;  4OJ8 A;  4C5W A;  4J5I A;  3SWT A;  2Q4A A;  5KEU A;  3PVJ A;  4M25 A;  5J92 A;  4M2C A;  4M2G A;  2OG5 A;  4YLM X;  1DRY A;  1OTJ A;  1GVG A;  4M2F A;  4C8R A;  1DS1 A;  4M2E A;  4BGK A;  1OIJ B;  1OS7 A;  3MS5 A;  4M2I A;  4BHF A;  1VZ5 A;  3O2G A;  4M26 A;  4Y0E A;  4M27 A;  1DRT A;  1OIK A;  2OG6 A;  1NX8 A;  3V17 A;  1OIJ C; 
#chains in the Genus database with same CATH topology
 1OIJ A;  2R6S A;  4BHG A;  4M23 A;  4BG1 A;  4CWD A;  1GY9 A;  3EAT X;  1NX4 A;  3R1J A;  1DS0 A;  5HSX A;  3V15 A;  1OII A;  4FFA A;  1GQW A;  1JR7 A;  2WBQ A;  4BGM A;  1PG6 A;  2WBO A;  4CVY A;  1OIH A;  4NE0 A;  4BHI A;  2OG7 A;  2WBP A;  1VZ4 A;  3N6W A;  1Y0Z A;  4OJ8 A;  4C5W A;  4J5I A;  3SWT A;  2Q4A A;  5KEU A;  3PVJ A;  1YOX A;  4M25 A;  5J92 A;  4M2C A;  4M2G A;  2OG5 A;  4YLM X;  1DRY A;  1OTJ A;  1GVG A;  4M2F A;  4C8R A;  1DS1 A;  4M2E A;  4BGK A;  1OIJ B;  1OS7 A;  3MS5 A;  4M2I A;  4BHF A;  1VZ5 A;  3O2G A;  4M26 A;  4Y0E A;  4M27 A;  1DRT A;  1OIK A;  2OG6 A;  1NX8 A;  3V17 A;  1OIJ C; 
#chains in the Genus database with same CATH homology
 1H2M A;  2R6S A;  2Y0I A;  4BHG A;  4M23 A;  4CWD A;  1NX4 A;  4B7K A;  4BGM A;  4B7E A;  4OJ8 A;  4J5I A;  1MZE A;  4JAA A;  4M2G A;  2CGO A;  3OD4 A;  1DS1 A;  4M2E A;  1VZ5 A;  4Y0E A;  4M27 A;  1NX8 A;  4BG1 A;  3EAT X;  3R1J A;  1OII A;  4FFA A;  1GQW A;  1JR7 A;  4AI8 A;  2WA4 A;  3N6W A;  2W0X A;  2Q4A A;  5KEU A;  5J92 A;  2OG5 A;  3D8C A;  1OTJ A;  4M2F A;  3P3N A;  4Z2W A;  1OIJ B;  4BHF A;  3MS5 A;  1YCI A;  2OG6 A;  3V17 A;  2XUM A;  1OIJ A;  4NR1 A;  5HSX A;  3V15 A;  2WBO A;  4Z1V A;  4NE0 A;  1Y0Z A;  5JWP A;  1H2K A;  3KCX A;  4YLM X;  1H2L A;  2WA3 A;  1OS7 A;  3O2G A;  2YC0 A;  1DRT A;  1H2N A;  4M2C A;  1OIJ C;  1GY9 A;  1DS0 A;  1IZ3 A;  3P3P A;  2CGN A;  2WBQ A;  1MZF A;  4CVY A;  1OIH A;  4BHI A;  2OG7 A;  2WBP A;  1VZ4 A;  4C5W A;  3SWT A;  3PVJ A;  4M25 A;  2ILM A;  1DRY A;  1GVG A;  3KCY A;  4BIO A;  4C8R A;  4BGK A;  2YDE A;  4M2I A;  4M26 A;  1OIK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3R1JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations