3UD1A

Crystal structure of zu5a-zu5b domains of human erythrocyte ankyrin
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
322
structure length
320
Chain Sequence
GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKRVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
pubmed doi rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Ankyrin-1
total genus 76
structure length 320
sequence length 322
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00791 ZU5 ZU5 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3ud1A01
2.60.220.30 Mainly Beta Sandwich Chondroitinase Ac; Chain A, domain 3 Chondroitinase Ac; Chain A, domain 3 3ud1A02
3UD2A 4D8OA 3F59A 2KXRA 3UD1A 3KBTC 2KXSA 3KBUC
chains in the Genus database with same CATH superfamily
1X1HA 4DLQA 2WCOA 1LOHA 4D6CA 1I8QA 1J0NA 1N7QA 2WMGA 3U7VA 4D6IA 1CB8A 1OJPA 1LXMA 2WMHA 4D6GA 1OJOA 3KBUC 4D1IA 1RWCA 1W3YA 1HM2A 3QR8A 4D8OA 4D6HA 1F9GA 4D6EA 2WMFA 2KXRA 1RW9A 4D1JA 3PQIA 2WMIB 2WDAA 1F1SA 1HMWA 1N7RA 1EGUA 4D71A 4D6JA 2E22A 2X03A 1RWFA 1X1IA 3F59A 2WMJA 1HMUA 1X1JA 4DLOA 1HN0A 3UD1A 1RWAA 1RWHA 2Q1FA 2KXSA 4D6FA 1OJMA 2WMKA 1N7PA 2BRPA 3UD2A 1N7OA 1OJNA 1HM3A 1RWGA 2WMIA 1N7NA 2BRWA 1J0MA 3KBTC 2BRVX 4D6DA 2E24A 4D72A 1C82A 1LXKA
chains in the Genus database with same CATH topology
3UD2A 3QR8A 4D8OA 3F59A 4DLQA 2KXRA 4DLOA 3PQIA 3UD1A 3KBTC 2KXSA 3KBUC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UD2 A;  4D8O A;  3F59 A;  2KXR A;  3UD1 A;  3KBT C;  2KXS A;  3KBU C; 
#chains in the Genus database with same CATH topology
 1X1H A;  4DLQ A;  2WCO A;  1LOH A;  4D6C A;  1I8Q A;  1J0N A;  1N7Q A;  2WMG A;  3U7V A;  4D6I A;  1CB8 A;  1OJP A;  1LXM A;  2WMH A;  4D6G A;  1OJO A;  3KBU C;  4D1I A;  1RWC A;  1W3Y A;  1HM2 A;  3QR8 A;  4D8O A;  4D6H A;  1F9G A;  4D6E A;  2WMF A;  2KXR A;  1RW9 A;  4D1J A;  3PQI A;  2WMI B;  2WDA A;  1F1S A;  1HMW A;  1N7R A;  1EGU A;  4D71 A;  4D6J A;  2E22 A;  2X03 A;  1RWF A;  1X1I A;  3F59 A;  2WMJ A;  1HMU A;  1X1J A;  4DLO A;  1HN0 A;  3UD1 A;  1RWA A;  1RWH A;  2Q1F A;  2KXS A;  4D6F A;  1OJM A;  2WMK A;  1N7P A;  2BRP A;  3UD2 A;  1N7O A;  1OJN A;  1HM3 A;  1RWG A;  2WMI A;  1N7N A;  2BRW A;  1J0M A;  3KBT C;  2BRV X;  4D6D A;  2E24 A;  4D72 A;  1C82 A;  1LXK A; 
#chains in the Genus database with same CATH homology
 3UD2 A;  3QR8 A;  4D8O A;  3F59 A;  4DLQ A;  2KXR A;  4DLO A;  3PQI A;  3UD1 A;  3KBT C;  2KXS A;  3KBU C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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