4FFA | Genus

Total Genus 71

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	71
sequence length	289
structure length	242
Chain Sequence	ITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPINRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTNRPDFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAPMEI

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Mycobacterium tuberculosis
publication title	Mycobacterium tuberculosis Rv3406 Is a Type II Alkyl Sulfatase Capable of Sulfate Scavenging. pubmed doi rcsb
molecule keywords	Rv3406 alkyl sulfatase
total genus	71
structure length	242
sequence length	289
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2012-05-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02668	TauD	Taurine catabolism dioxygenase TauD, TfdA family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	4ffaA00

1DRTA 1OIIA 4BHGA 2WBQA 5KEUA 4M2FA 4BGMA 4Y0EA 3PVJA 3MS5A 1OIKA 1GY9A 4C5WA 1VZ5A 2OG6A 4M2IA 2OG7A 4M2EA 4M2CA 3EATX 4FFAA 4YLMX 3SWTA 1OS7A 1Y0ZA 4J5IA 4M2GA 4CWDA 2WBPA 4OJ8A 5J92A 5HSXA 2OG5A 1VZ4A 1NX8A 1OIHA 2WBOA 4M23A 4BG1A 4BHIA 4BGKA 1DS1A 1GVGA 4CVYA 3R1JA 1OIJA 1OIJC 3O2GA 2R6SA 1OIJB 4BHFA 4M27A 3N6WA 1GQWA 1NX4A 2Q4AA 4M26A 4NE0A 3V15A 4M25A 1JR7A 4C8RA 1OTJA 1DRYA 3V17A 1DS0A
chains in the Genus database with same CATH superfamily

1DRTA 1OIIA 4BHGA 2WBQA 5KEUA 4M2FA 4BGMA 4Y0EA 3PVJA 3MS5A 1OIKA 1GY9A 4C5WA 1VZ5A 2OG6A 4M2IA 2OG7A 4M2EA 4M2CA 3EATX 4FFAA 4YLMX 3SWTA 1OS7A 1Y0ZA 4J5IA 4M2GA 4CWDA 2WBPA 4OJ8A 5J92A 5HSXA 2OG5A 1VZ4A 1NX8A 1OIHA 2WBOA 4M23A 4BG1A 4BHIA 4BGKA 1DS1A 1GVGA 4CVYA 3R1JA 1YOXA 1OIJA 1OIJC 3O2GA 2R6SA 1OIJB 4BHFA 1PG6A 4M27A 3N6WA 1GQWA 1NX4A 2Q4AA 4M26A 4NE0A 3V15A 4M25A 1JR7A 4C8RA 1OTJA 1DRYA 3V17A 1DS0A
chains in the Genus database with same CATH topology

1GY9A 4M2EA 3EATX 4FFAA 4OJ8A 3P3PA 5HSXA 2WBOA 4BG1A 1YCIA 3KCYA 1H2KA 1GQWA 4NE0A 1DRYA 3V17A 1OIIA 4AI8A 2WBQA 3D8CA 4M2FA 2ILMA 4C5WA 2OG6A 2OG7A 4M2CA 4YLMX 5J92A 2CGOA 4BGKA 1OIHA 4Z2WA 3O2GA 4B7EA 4C8RA 4M25A 1JR7A 5JWPA 1H2MA 5KEUA 4BHGA 4BGMA 3PVJA 3MS5A 3KCXA 1OIKA 4B7KA 1VZ5A 1IZ3A 4Z1VA 4M2IA 2WA3A 4NR1A 2YC0A 3SWTA 1OS7A 4J5IA 2CGNA 2YDEA 1H2LA 3OD4A 1MZEA 1NX8A 1GVGA 4BIOA 1OIJA 1OIJC 2R6SA 1OIJB 4M27A 1NX4A 1OTJA 1DS0A 1DRTA 2WA4A 4Y0EA 2W0XA 3P3NA 2XUMA 1Y0ZA 4CWDA 4M2GA 4JAAA 2WBPA 2OG5A 1VZ4A 4BHIA 4M23A 1DS1A 2Y0IA 4CVYA 3R1JA 1MZFA 4BHFA 1H2NA 3N6WA 2Q4AA 4M26A 3V15A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1DRT A;  1OII A;  4BHG A;  2WBQ A;  5KEU A;  4M2F A;  4BGM A;  4Y0E A;  3PVJ A;  3MS5 A;  1OIK A;  1GY9 A;  4C5W A;  1VZ5 A;  2OG6 A;  4M2I A;  2OG7 A;  4M2E A;  4M2C A;  3EAT X;  4FFA A;  4YLM X;  3SWT A;  1OS7 A;  1Y0Z A;  4J5I A;  4M2G A;  4CWD A;  2WBP A;  4OJ8 A;  5J92 A;  5HSX A;  2OG5 A;  1VZ4 A;  1NX8 A;  1OIH A;  2WBO A;  4M23 A;  4BG1 A;  4BHI A;  4BGK A;  1DS1 A;  1GVG A;  4CVY A;  3R1J A;  1OIJ A;  1OIJ C;  3O2G A;  2R6S A;  1OIJ B;  4BHF A;  4M27 A;  3N6W A;  1GQW A;  1NX4 A;  2Q4A A;  4M26 A;  4NE0 A;  3V15 A;  4M25 A;  1JR7 A;  4C8R A;  1OTJ A;  1DRY A;  3V17 A;  1DS0 A; 
#chains in the Genus database with same CATH topology
 1DRT A;  1OII A;  4BHG A;  2WBQ A;  5KEU A;  4M2F A;  4BGM A;  4Y0E A;  3PVJ A;  3MS5 A;  1OIK A;  1GY9 A;  4C5W A;  1VZ5 A;  2OG6 A;  4M2I A;  2OG7 A;  4M2E A;  4M2C A;  3EAT X;  4FFA A;  4YLM X;  3SWT A;  1OS7 A;  1Y0Z A;  4J5I A;  4M2G A;  4CWD A;  2WBP A;  4OJ8 A;  5J92 A;  5HSX A;  2OG5 A;  1VZ4 A;  1NX8 A;  1OIH A;  2WBO A;  4M23 A;  4BG1 A;  4BHI A;  4BGK A;  1DS1 A;  1GVG A;  4CVY A;  3R1J A;  1YOX A;  1OIJ A;  1OIJ C;  3O2G A;  2R6S A;  1OIJ B;  4BHF A;  1PG6 A;  4M27 A;  3N6W A;  1GQW A;  1NX4 A;  2Q4A A;  4M26 A;  4NE0 A;  3V15 A;  4M25 A;  1JR7 A;  4C8R A;  1OTJ A;  1DRY A;  3V17 A;  1DS0 A; 
#chains in the Genus database with same CATH homology
 1GY9 A;  4M2E A;  3EAT X;  4FFA A;  4OJ8 A;  3P3P A;  5HSX A;  2WBO A;  4BG1 A;  1YCI A;  3KCY A;  1H2K A;  1GQW A;  4NE0 A;  1DRY A;  3V17 A;  1OII A;  4AI8 A;  2WBQ A;  3D8C A;  4M2F A;  2ILM A;  4C5W A;  2OG6 A;  2OG7 A;  4M2C A;  4YLM X;  5J92 A;  2CGO A;  4BGK A;  1OIH A;  4Z2W A;  3O2G A;  4B7E A;  4C8R A;  4M25 A;  1JR7 A;  5JWP A;  1H2M A;  5KEU A;  4BHG A;  4BGM A;  3PVJ A;  3MS5 A;  3KCX A;  1OIK A;  4B7K A;  1VZ5 A;  1IZ3 A;  4Z1V A;  4M2I A;  2WA3 A;  4NR1 A;  2YC0 A;  3SWT A;  1OS7 A;  4J5I A;  2CGN A;  2YDE A;  1H2L A;  3OD4 A;  1MZE A;  1NX8 A;  1GVG A;  4BIO A;  1OIJ A;  1OIJ C;  2R6S A;  1OIJ B;  4M27 A;  1NX4 A;  1OTJ A;  1DS0 A;  1DRT A;  2WA4 A;  4Y0E A;  2W0X A;  3P3N A;  2XUM A;  1Y0Z A;  4CWD A;  4M2G A;  4JAA A;  2WBP A;  2OG5 A;  1VZ4 A;  4BHI A;  4M23 A;  1DS1 A;  2Y0I A;  4CVY A;  3R1J A;  1MZF A;  4BHF A;  1H2N A;  3N6W A;  2Q4A A;  4M26 A;  3V15 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4FFAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations