4M25 | Genus

Total Genus 105

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	105
sequence length	336
structure length	336
Chain Sequence	TPSYSLTPAEASAVAELTLELAAAYGSFGDPVLLRDLPRLAARLPEGVQDFLREFKLADRHGHTVIRGHDFDQRRIGPTPDHWRGRVRPGPEFPEELLLMLYSALLGEPFGWATQQDGHLVHDIFPIRSHENDQLGMGSKQLLTWHTEDAFHPYRSDYLILGALRNPDHVPTTVGELDLSSLSAEDIDVLFEPRYHIAPDESHLPKNNTIATEEEAARFATIQRMIDERPLGPLLYGSRLDPYMRLDPYFTSVPQDDTDARRAYDALFKVVDSGMREVVADQGDVLFIDNHRAVHGRLPFQARYDGTDRWLKRVCVTSDLRRSREMRATSATRLLG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Streptomyces lavendulae
publication title	Biosynthesis of streptolidine involved two unexpected intermediates produced by a dihydroxylase and a cyclase through unusual mechanisms. pubmed doi rcsb
molecule keywords	L-arginine beta-hydroxylase
total genus	105
structure length	336
sequence length	336
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2013-08-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02668	TauD	Taurine catabolism dioxygenase TauD, TfdA family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	4m25A00

5J92A 4BGMA 4M2EA 4BHFA 1OIKA 3PVJA 3N6WA 3V15A 3V17A 4BHIA 4BHGA 4CVYA 1DS1A 1OIIA 1NX4A 2R6SA 4M26A 1Y0ZA 2WBQA 4C5WA 2WBPA 1OIJA 4OJ8A 1DS0A 4YLMX 4BGKA 5HSXA 4M23A 1VZ5A 4NE0A 1OS7A 5KEUA 2OG7A 1OIHA 2WBOA 3SWTA 4FFAA 4Y0EA 1VZ4A 1GVGA 4M2IA 1OTJA 1GY9A 4CWDA 4M2GA 4M2CA 3MS5A 1DRTA 4M2FA 1NX8A 2Q4AA 1DRYA 3R1JA 1OIJC 1GQWA 4M27A 4J5IA 4BG1A 3EATX 1JR7A 1OIJB 3O2GA 2OG6A 2OG5A 4M25A 4C8RA
chains in the Genus database with same CATH superfamily

5J92A 4BGMA 4M2EA 4BHFA 1OIKA 3PVJA 3N6WA 3V15A 3V17A 4BHIA 4BHGA 4CVYA 1DS1A 1OIIA 1NX4A 2R6SA 4M26A 1Y0ZA 2WBQA 4C5WA 2WBPA 1OIJA 4OJ8A 1DS0A 1YOXA 4YLMX 4BGKA 5HSXA 4M23A 1VZ5A 4NE0A 1OS7A 5KEUA 2OG7A 1OIHA 2WBOA 3SWTA 4FFAA 4Y0EA 1VZ4A 1GVGA 4M2IA 1OTJA 1GY9A 4CWDA 4M2GA 4M2CA 3MS5A 1DRTA 4M2FA 1NX8A 2Q4AA 1DRYA 3R1JA 1OIJC 1GQWA 4M27A 4J5IA 4BG1A 3EATX 1JR7A 1OIJB 3O2GA 1PG6A 2OG6A 2OG5A 4M25A 4C8RA
chains in the Genus database with same CATH topology

4BGMA 3P3PA 3V15A 4CVYA 1MZFA 4JAAA 1H2NA 2R6SA 2WBQA 4Z1VA 4YLMX 1H2KA 1VZ5A 3SWTA 1VZ4A 2YC0A 4M2CA 1DRTA 1NX8A 3R1JA 1GQWA 1OIJB 2WA3A 4AI8A 4M26A 2OG6A 4BHFA 1OIKA 4BHIA 2CGOA 4C5WA 1OIJA 1DS0A 4BIOA 5KEUA 2OG7A 4FFAA 2CGNA 1IZ3A 3KCYA 1GVGA 4M2IA 1OTJA 1DRYA 4M27A 4J5IA 3EATX 3OD4A 2YDEA 5J92A 3PVJA 2WA4A 3N6WA 3V17A 1OIIA 1NX4A 3KCXA 5JWPA 1H2LA 2Y0IA 4OJ8A 4BGKA 4NE0A 1OS7A 4NR1A 1OIHA 4M2GA 4M2FA 4BG1A 1JR7A 3O2GA 2OG5A 4M2EA 4BHGA 3D8CA 1DS1A 1Y0ZA 4B7KA 2WBPA 5HSXA 4M23A 1YCIA 2WBOA 1H2MA 1MZEA 2W0XA 4Y0EA 2ILMA 2XUMA 4CWDA 1GY9A 4B7EA 3MS5A 2Q4AA 1OIJC 3P3NA 4Z2WA 4M25A 4C8RA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5J92 A;  4BGM A;  4M2E A;  4BHF A;  1OIK A;  3PVJ A;  3N6W A;  3V15 A;  3V17 A;  4BHI A;  4BHG A;  4CVY A;  1DS1 A;  1OII A;  1NX4 A;  2R6S A;  4M26 A;  1Y0Z A;  2WBQ A;  4C5W A;  2WBP A;  1OIJ A;  4OJ8 A;  1DS0 A;  4YLM X;  4BGK A;  5HSX A;  4M23 A;  1VZ5 A;  4NE0 A;  1OS7 A;  5KEU A;  2OG7 A;  1OIH A;  2WBO A;  3SWT A;  4FFA A;  4Y0E A;  1VZ4 A;  1GVG A;  4M2I A;  1OTJ A;  1GY9 A;  4CWD A;  4M2G A;  4M2C A;  3MS5 A;  1DRT A;  4M2F A;  1NX8 A;  2Q4A A;  1DRY A;  3R1J A;  1OIJ C;  1GQW A;  4M27 A;  4J5I A;  4BG1 A;  3EAT X;  1JR7 A;  1OIJ B;  3O2G A;  2OG6 A;  2OG5 A;  4M25 A;  4C8R A; 
#chains in the Genus database with same CATH topology
 5J92 A;  4BGM A;  4M2E A;  4BHF A;  1OIK A;  3PVJ A;  3N6W A;  3V15 A;  3V17 A;  4BHI A;  4BHG A;  4CVY A;  1DS1 A;  1OII A;  1NX4 A;  2R6S A;  4M26 A;  1Y0Z A;  2WBQ A;  4C5W A;  2WBP A;  1OIJ A;  4OJ8 A;  1DS0 A;  1YOX A;  4YLM X;  4BGK A;  5HSX A;  4M23 A;  1VZ5 A;  4NE0 A;  1OS7 A;  5KEU A;  2OG7 A;  1OIH A;  2WBO A;  3SWT A;  4FFA A;  4Y0E A;  1VZ4 A;  1GVG A;  4M2I A;  1OTJ A;  1GY9 A;  4CWD A;  4M2G A;  4M2C A;  3MS5 A;  1DRT A;  4M2F A;  1NX8 A;  2Q4A A;  1DRY A;  3R1J A;  1OIJ C;  1GQW A;  4M27 A;  4J5I A;  4BG1 A;  3EAT X;  1JR7 A;  1OIJ B;  3O2G A;  1PG6 A;  2OG6 A;  2OG5 A;  4M25 A;  4C8R A; 
#chains in the Genus database with same CATH homology
 4BGM A;  3P3P A;  3V15 A;  4CVY A;  1MZF A;  4JAA A;  1H2N A;  2R6S A;  2WBQ A;  4Z1V A;  4YLM X;  1H2K A;  1VZ5 A;  3SWT A;  1VZ4 A;  2YC0 A;  4M2C A;  1DRT A;  1NX8 A;  3R1J A;  1GQW A;  1OIJ B;  2WA3 A;  4AI8 A;  4M26 A;  2OG6 A;  4BHF A;  1OIK A;  4BHI A;  2CGO A;  4C5W A;  1OIJ A;  1DS0 A;  4BIO A;  5KEU A;  2OG7 A;  4FFA A;  2CGN A;  1IZ3 A;  3KCY A;  1GVG A;  4M2I A;  1OTJ A;  1DRY A;  4M27 A;  4J5I A;  3EAT X;  3OD4 A;  2YDE A;  5J92 A;  3PVJ A;  2WA4 A;  3N6W A;  3V17 A;  1OII A;  1NX4 A;  3KCX A;  5JWP A;  1H2L A;  2Y0I A;  4OJ8 A;  4BGK A;  4NE0 A;  1OS7 A;  4NR1 A;  1OIH A;  4M2G A;  4M2F A;  4BG1 A;  1JR7 A;  3O2G A;  2OG5 A;  4M2E A;  4BHG A;  3D8C A;  1DS1 A;  1Y0Z A;  4B7K A;  2WBP A;  5HSX A;  4M23 A;  1YCI A;  2WBO A;  1H2M A;  1MZE A;  2W0X A;  4Y0E A;  2ILM A;  2XUM A;  4CWD A;  1GY9 A;  4B7E A;  3MS5 A;  2Q4A A;  1OIJ C;  3P3N A;  4Z2W A;  4M25 A;  4C8R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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4M25A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations